EWM23921.1, cds6757 (CDS) Nannochloropsis gaditana

Overview
NameEWM23921.1
Unique Namecds6757
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002469.1:466732..468561 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM23921.1
Productubiquitin-protein ligase
Partialtrue
Orig transcript idgnl|cribi|Naga_100082g1.9353.mrna
GbkeyCDS
End range.
End range468561
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002469.1supercontigCM002469.1:466732..468561 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016740transferase activity
GO:0004842ubiquitin-protein transferase activity
Vocabulary: Biological Process
TermDefinition
GO:0006464cellular protein modification process
Vocabulary: INTERPRO
TermDefinition
IPR000569HECT
Homology
BLAST of EWM23921.1 vs. NCBI_GenBank
Match: gi|585105206|gb|EWM23921.1| (ubiquitin-protein ligase, partial [Nannochloropsis gaditana])

HSP 1 Score: 1223.38 bits (3164), Expect = 0.000e+0
Identity = 609/609 (100.00%), Postives = 609/609 (100.00%), Query Frame = 0
Query:    1 HMVSLLMPPMASPLARSQEEIKDTLGDADPASHVLAHAAARELVSSGGVREECWVIKPLSERMAQELQDPVALATQQLPGWCDQLLRYGPFLLQFRVRKEYFHLSSFGLGRAVHRLLQQQRQGMDGQGGGGGGGGEGGGTGRHASHGHSHQGSHHHHHHHQYRRAPTSAVQQLKVQVSRRKLLASAEKVLEEHGSRRVLLETEFFNEPGTGSGPTAEFFSLVSKEMRSPNLGLWRGESHHDGLYPQPWSDPTGGSEERMKDQKGGGGRPEGGRGQKLRQFACLGRLIGQALLDERLLDIRFAAPLVATLAGRQASQSLPAALEEMERVDSALARQLQALAASTGLAQWFEAPESGQRSERQEQEVGPGKIVRESADADERVSALCLTFCLPGEPEIGLLGPSGVPVKPGVEGLRSDGGLGEDVTRQNLGLYVQRVLQVGLREAVRPQVTAMLTGLQDIVPTGALWVFTEEEIMAMVGGVGSEMGKDPEEILEALACDHGYTRGSQAVRWLVEILAEMTLEEERHFLMFVTGSPGLPVGGLMGCCPRLTVVKKVAEGHARALGQAGVDAMLPSASTCTNYLKLPDYSSRAVMRERLLLSLRHGQHSFHLS 609
            HMVSLLMPPMASPLARSQEEIKDTLGDADPASHVLAHAAARELVSSGGVREECWVIKPLSERMAQELQDPVALATQQLPGWCDQLLRYGPFLLQFRVRKEYFHLSSFGLGRAVHRLLQQQRQGMDGQGGGGGGGGEGGGTGRHASHGHSHQGSHHHHHHHQYRRAPTSAVQQLKVQVSRRKLLASAEKVLEEHGSRRVLLETEFFNEPGTGSGPTAEFFSLVSKEMRSPNLGLWRGESHHDGLYPQPWSDPTGGSEERMKDQKGGGGRPEGGRGQKLRQFACLGRLIGQALLDERLLDIRFAAPLVATLAGRQASQSLPAALEEMERVDSALARQLQALAASTGLAQWFEAPESGQRSERQEQEVGPGKIVRESADADERVSALCLTFCLPGEPEIGLLGPSGVPVKPGVEGLRSDGGLGEDVTRQNLGLYVQRVLQVGLREAVRPQVTAMLTGLQDIVPTGALWVFTEEEIMAMVGGVGSEMGKDPEEILEALACDHGYTRGSQAVRWLVEILAEMTLEEERHFLMFVTGSPGLPVGGLMGCCPRLTVVKKVAEGHARALGQAGVDAMLPSASTCTNYLKLPDYSSRAVMRERLLLSLRHGQHSFHLS
Sbjct:    1 HMVSLLMPPMASPLARSQEEIKDTLGDADPASHVLAHAAARELVSSGGVREECWVIKPLSERMAQELQDPVALATQQLPGWCDQLLRYGPFLLQFRVRKEYFHLSSFGLGRAVHRLLQQQRQGMDGQGGGGGGGGEGGGTGRHASHGHSHQGSHHHHHHHQYRRAPTSAVQQLKVQVSRRKLLASAEKVLEEHGSRRVLLETEFFNEPGTGSGPTAEFFSLVSKEMRSPNLGLWRGESHHDGLYPQPWSDPTGGSEERMKDQKGGGGRPEGGRGQKLRQFACLGRLIGQALLDERLLDIRFAAPLVATLAGRQASQSLPAALEEMERVDSALARQLQALAASTGLAQWFEAPESGQRSERQEQEVGPGKIVRESADADERVSALCLTFCLPGEPEIGLLGPSGVPVKPGVEGLRSDGGLGEDVTRQNLGLYVQRVLQVGLREAVRPQVTAMLTGLQDIVPTGALWVFTEEEIMAMVGGVGSEMGKDPEEILEALACDHGYTRGSQAVRWLVEILAEMTLEEERHFLMFVTGSPGLPVGGLMGCCPRLTVVKKVAEGHARALGQAGVDAMLPSASTCTNYLKLPDYSSRAVMRERLLLSLRHGQHSFHLS 609          
BLAST of EWM23921.1 vs. NCBI_GenBank
Match: gi|831760331|ref|XP_012749920.1| (hypothetical protein SAMD00019534_102150 [Acytostelium subglobosum LB1] >gi|735850552|dbj|GAM27040.1| hypothetical protein SAMD00019534_102150 [Acytostelium subglobosum LB1])

HSP 1 Score: 295.819 bits (756), Expect = 3.255e-83
Identity = 185/572 (32.34%), Postives = 285/572 (49.83%), Query Frame = 0
Query:   54 WVIKPLSERMAQELQDPVALATQQLPGWCDQLLRYGPFLLQFRVRKEYFHLSSFGLGRAVHRLLQQQRQGMDGQGGGGGGGGEGGGTGRHASHGHSHQGSHHHHHHHQYRRAPTSAVQQLKVQVSRRKLLASAEKVLEEHGSRRVLLETEFFNEPGTGSGPTAEFFSLVSKEMRSPNLGLWRGESHHD--------------GLYPQPWSDPTGGSEERMKDQKGGGGRPEGGRGQKLRQFACLGRLIGQALLDERLLDIRFAAPLVATLAGRQASQSLPAALEEMERVDSALARQLQALAASTGLAQWFEAPESGQRSERQEQEVGPGKIVRESADADERVSALCLTFCLPGEPEIGLLGPSGVPVKPGVEGLRSDGGLGEDVTRQNLGLYVQRVLQVGLREAVRPQVTAMLTGLQDIVPTGALWVFTEEEIMAMVGG--VGSEMGKDPEEILEALACDHGYTRGSQAVRWLVEILAEMTLEEERHFLMFVTGSPGLPVGGLMGCCPRLTVVKKVAEGHARALGQAGVDAMLPSASTCTNYLKLPDYSSRAVMRERLLLSLRHGQHSFHLS 609
            ++ + L+ ++ ++LQDP+AL    LP WC QLL Y PFL  F  ++ +F+ +SFG+ RA+  L  QQRQ +  Q            T   + +G+++ G        +  R P     + KV++ R ++L SA KV+E +G  + +LE E+F E GTG GPT EFF+LVS+E+R  +L LW  ++  +              GL+P+P                    RP     + L  F  LG  + +A  D+RL+D+ F+ P    +A +           ++  +  ++A  L  L A   L    +A +S +  + Q+++     +  + A  D+    LCL F LPG P+  L                 D G    V   NL  Y+  ++   L   V  QV A   G   I P  +L+ F+  E+ +++ G   GS+     + ++E+  CDHGYT  S AV+   +I++E + EE + FL+F+TGSP LP+ G  G  PRLT+VKK    H   L  A  D  L S  +CTNY+KLPDYSSR +M+ +LL +++ GQ SFHLS
Sbjct: 1324 FISQKLTAKVMRQLQDPLALCGGALPDWCKQLLTYCPFLFPFECKRLFFYSTSFGIARALSTL--QQRQDLIRQ------------TSESSRNGNNNPG------EVRVGRIP-----RQKVRIYRNRILDSAIKVMELYGKTKSILEVEYFGEVGTGLGPTLEFFTLVSREVRRKDLNLWYSDTESNAASTDASPYVFNAGGLFPKPV-------------------RPGTLPKKTLDYFKFLGTFVAKAFYDQRLVDLPFSKPFYKYMANKDLE------FGDLAVIAPSMASSLNNLYA---LVLKIKAIKSSKSIDDQQKQTDIAALRIDGAKVDD----LCLDFVLPGHPQWEL----------------KDNGSNISVNIFNLEEYLNLIVMNFLYSGVIQQVDAFKEGFNQIFPITSLFPFSVAEVESLLCGALTGSDSDWTVDALMESTKCDHGYTNSSIAVQNFFKIMSEFSTEERKQFLLFITGSPHLPIQGFKGLNPRLTIVKK----HLNTL--AAADDSLLSVMSCTNYIKLPDYSSRDIMKSKLLYAMKEGQSSFHLS 1816          
BLAST of EWM23921.1 vs. NCBI_GenBank
Match: gi|284019004|gb|ADB64456.1| (KAKTUS 1, partial [Artemisia annua])

HSP 1 Score: 267.314 bits (682), Expect = 4.856e-79
Identity = 181/554 (32.67%), Postives = 269/554 (48.56%), Query Frame = 0
Query:   68 QDPVALATQQLPGWCDQLLRYGPFLLQFRVRKEYFHLSSFGLGRAVHRLLQQQRQGMDGQGGGGGGGGEGGGTGRHASHGHSHQGSHHHHHHHQYRRAPTSAVQQLKVQVSRRKLLASAEKVLEEHGSRRVLLETEFFNEPGTGSGPTAEFFSLVSKEMRSPNLGLWRGESHHD------GLYPQPWSDPTGGSEERMKDQKGGGGRPEGGRGQK-LRQFACLGRLIGQALLDERLLDIRFAAPLVATLAGRQASQSLPAALEEMERVDSALARQLQALAASTGLAQWFEAPESGQRSERQEQEVGPGKIVRESADADERVSALCLTFCLPGEPEIGLLGPSGVPVKPGVEGLRSDGGLGEDVTRQNLGLYVQRVLQVGLREAVRPQVTAMLTGLQDIVPTGALWVFTEEEIMAMVGGVGSEMGKDPEEILEALACDHGYTRGSQAVRWLVEILAEMTLEEERHFLMFVTGSPGLPVGGLMGCCPRLTVVKKVAEGHARALGQAG-----VDAMLPSASTCTNYLKLPDYSSRAVMRERLLLSLRHGQHSFHLS 609
            QD +AL +  LP WC QL +  PFL  F  R++YF+ ++FGL RA++RL  QQ+QG DG G                                  R      +++ KV+VSR ++L SA KV+E + S++ +LE E+F E GTG GPT EF++L+S +++  +L +WR  S  D      GL+P+PW      S              +G +  K +  F  LG ++ +AL D RLLD+  +      + G++        L ++   D+ L + LQ L A     Q+ E+     RSE  + +                V  LCL F LPG P+  L        K G           EDV   NL  YV  V+   ++  +  Q+ A   G   +    AL +F+ +E+  +V G  +E+  + ++++E +  DHGYT  S AV  L+EIL E   E++R F  FVTG+P LP GGL    P+LT+V+K +   +     A       D  LPS  TC NYLKLP YS++ +M ++LL ++  GQ SF LS
Sbjct:    1 QDVLALCSGSLPSWCYQLTKACPFLFPFETRRQYFYSTAFGLSRALYRL--QQQQGADGNGSTNE------------------------------REMRVGRLRRQKVRVSRNRILDSAAKVMEMYSSQKAVLEVEYFGEVGTGLGPTLEFYTLLSHDLQRADLRMWRSSSFDDVIIAPLGLFPRPWPLTANSS--------------DGSKFAKVIEYFRLLGCVMAKALQDGRLLDLPLSTAFYKLVLGQELD------LMDVSSFDAELGKTLQELQALVCRKQYLESMSGHDRSEMLDLKFRGAP-----------VEDLCLDFTLPGYPDFTL--------KSG----------DEDVNINNLEEYVSLVVSATVKTGITRQMEAFRAGFNQVFDISALQIFSPDELDYLVCG-HTELW-EADKLVEHIKFDHGYTSKSPAVVNLLEILGEFNPEQQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKHSSTASNVASSANGLSEPADDDLPSVMTCANYLKLPSYSTKEIMYKQLLYAISEGQGSFDLS 471          
BLAST of EWM23921.1 vs. NCBI_GenBank
Match: gi|929766289|ref|XP_014158125.1| (hypothetical protein SARC_03555 [Sphaeroforma arctica JP610] >gi|906955443|gb|KNC84223.1| hypothetical protein SARC_03555 [Sphaeroforma arctica JP610])

HSP 1 Score: 281.952 bits (720), Expect = 1.439e-78
Identity = 180/553 (32.55%), Postives = 274/553 (49.55%), Query Frame = 0
Query:   57 KPLSERMAQELQDPVALATQQLPGWCDQLLRYGPFLLQFRVRKEYFHLSSFGLGRAVHRLLQQQRQGMDGQGGGGGGGGEGGGTGRHASHGHSHQGSHHHHHHHQYRRAPTSAVQQLKVQVSRRKLLASAEKVLEEHGSRRVLLETEFFNEPGTGSGPTAEFFSLVSKEMRSPNLGLWRGESHHDGLYPQPWSDPTGGSEERMKDQKGGGGRPEGGRGQKLRQFACLGRLIGQALLDERLLDIRFAAPLVATLAGRQASQSLPAALEEMERVDSALARQLQALAASTGLAQWFEAPESGQRSERQEQEVGPGKIVRESADADERVSALCLTFCLPGEPEIGLLGPSGVPVKPGVEGLRSDGGLGEDVTRQNLGLYVQRVLQVGLREAVRPQVTAMLTGLQDIVPTGALWVFTEEEIMAMVGGVGSEMGKDPEEILEALACDHGYTRGSQAVRWLVEILAEMTLEEERHFLMFVTGSPGLPVGGLMGCCPRLTVVKKVAEGHARALGQAGVDAMLPSASTCTNYLKLPDYSSRAVMRERLLLSLRHGQHSFHLS 609
            K L+ ++ ++L DP+ LA+  +P WCD L     FLL  + R+ Y H ++FG+ RA+  L +Q  Q               GGT                    Q      + +Q+ KV+++R  +L + +K++  + S  ++LE E+ NE GTG GPT EF++LVS+E ++  L +WR +    GLYP P   PT     R                ++ R F  LG+ +G+AL D +++DI F+  L+  L   +    +      +E +D AL R + AL     + Q +E  ++ +    +E+E     +    A  ++    LCL F +PG P+I L+                 GG  + V    LG Y++ V++  L ++V  Q+ A  +G  +++   AL  FT  E+  M+   G+E   D E +      DHGYT  S AV+ L  I+A  T +E+R FL F+TGSP LPVGGL    P LT+V+K  +   +       D  LPS  TCTNYLKLPDYSSR VM ERL+ ++  G  SFH+S
Sbjct: 1126 KTLNAKICRQLIDPLTLASASVPEWCDALCHRCGFLLPMKTRQSYLHATTFGIARALTNLQKQTEQS--------------GGT--------------------QKAELRIARIQRAKVKINRDSMLDACKKLMSRYASSHMMLEIEYKNEVGTGLGPTLEFYTLVSREFQADELAMWREKQQTVGLYPAPL--PTDIKSSR----------------KRCRMFRTLGQFVGKALWDSKMIDIPFSQTLLRWLLFEEDQFRITT----LEDIDPALCRTITAL---DDVRQQYEVIDTNEALTDEEKEAQINALRLNGATVED----LCLDFTIPGYPDIELIP----------------GGADQTVDIHRLGQYIRLVVKTILVDSVAQQMEAFRSGFDEVISLTALKGFTPNELALML--FGAEEKWDVETLAANTKPDHGYTSESAAVKNLFFIMANYTPDEKRKFLQFITGSPRLPVGGLKSLQPPLTIVRKAPDDSMQP------DDFLPSVMTCTNYLKLPDYSSREVMAERLVTAINEGTGSFHMS 1591          
BLAST of EWM23921.1 vs. NCBI_GenBank
Match: gi|674921136|emb|CDY12090.1| (BnaC03g60060D [Brassica napus])

HSP 1 Score: 275.404 bits (703), Expect = 1.739e-78
Identity = 186/600 (31.00%), Postives = 286/600 (47.67%), Query Frame = 0
Query:   44 VSSGGVREECWVIKPLSERMAQELQDPVALATQQLPGWCDQLLRYGPFLLQFRVRKEYFHLSSFGLGRAVHRLLQQQRQGMDGQGGGGGGGGEGGGTGRHASHGHSHQGSHHHHHHHQYRRAPTSAVQQLKVQVSRRKLLASAEKVLEEHGSRRVLLETEFFNEPGTGSGPTAEFFSLVSKEMRSPNLGLWRGESHHD----------------------------GLYPQPWSDPTGGSEERMKDQKGGGGRPEGGRGQKLRQ-FACLGRLIGQALLDERLLDIRFAAPLVATLAGRQASQSLPAALEEMERVDSALARQLQALAASTGLAQWFEAPESGQRSERQEQEVGPGKIVRESADADERVSALCLTFCLPGEPEIGLLGPSGVPVKPGVEGLRSDGGLGEDVTRQN-LGLYVQRVLQVGLREAVRPQVTAMLTGLQDIVPTGALWVFTEEEIMAMVGGVGSEMGKDPEEILEALACDHGYTRGSQAVRWLVEILAEMTLEEERHFLMFVTGSPGLPVGGLMGCCPRLTVVKKVAEGHARALGQAG----VDAMLPSASTCTNYLKLPDYSSRAVMRERLLLSLRHGQHSFHLS 609
             ++  V  E ++   L+ ++A+++QD +AL +  LP WC QL    PFL  F+ R++YF+ ++FGL RA++RL QQQ           G  G G    R    G                      +Q+ KV+VSR ++L SA KV+E + S++ +LE E+F E GTG GPT EF++L+S +++  +LG+WR  S                               GL+P+PW      S              EG R  K+ + F  LGR++ +AL D RL+D+  +      + G++        L ++   D+ L + LQ L    G   + EA E G  S           ++ +      R+  LCL F LPG PE  +L P                  G+D+   N L  Y+  V+   ++  V  Q+ A  +G   +    +L VFT  E+  ++   G     + E ++E +  DHGYT  S A+ +L+EI+ E+T +++R F  FVTG+P LP GGL    P+LT+V+K++     A    G     D  LPS  TC NYLKLP YS++ +M ++LL ++  GQ SF LS
Sbjct:  337 TTAAKVSHEEFINSKLTPKLARQIQDALALCSGSLPSWCYQLTTACPFLFPFQTRRQYFYSTAFGLSRALNRLQQQQ-----------GADGSGSTNEREMRIGR---------------------LQRQKVRVSRNRILDSAAKVMEMYSSQKAVLEVEYFGEVGTGLGPTLEFYTLLSHDLQKVSLGMWRSNSGDKLSMQTDRDEIQDGKSAAARDRDIVQAPFGLFPRPWPSTADVS--------------EGSRFHKVVEYFRLLGRVMAKALQDGRLMDVPLSTAFYKLILGQELD------LHDVILFDAELGKTLQELRVLVGRKHYLEA-EGGDNS----------SVISDLCLRGSRIEDLCLDFTLPGYPEY-ILRP------------------GDDIVDINSLEDYISLVVDATVKRGVARQIEAFRSGFNQVFDIKSLQVFTPSELDYLL--CGRRELWEAETLVEHIKFDHGYTAKSPAIIFLLEIMGELTADQQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKLSSTSNAAANGTGASETADDDLPSVMTCANYLKLPPYSTKEIMYKKLLYAINEGQGSFDLS 852          
BLAST of EWM23921.1 vs. NCBI_GenBank
Match: gi|970057823|ref|XP_015055581.1| (PREDICTED: E3 ubiquitin-protein ligase UPL3-like [Solanum pennellii])

HSP 1 Score: 281.182 bits (718), Expect = 2.967e-78
Identity = 196/607 (32.29%), Postives = 298/607 (49.09%), Query Frame = 0
Query:   44 VSSGGVR--EECWVIKPLSERMAQELQDPVALATQQLPGWCDQLLRYGPFLLQFRVRKEYFHLSSFGLGRAVHRLLQQQRQGMDGQGGGGGGGGEGGGTGRHASHGHSHQGSHHHHHHHQYRRAPTSAVQQLKVQVSRRKLLASAEKVLEEHGSRRVLLETEFFNEPGTGSGPTAEFFSLVSKEMRSPNLGLWRG-----------ESHHD---------------GLYPQPWSDPTGGSEERMKDQKGGGGRPEGGRGQK-LRQFACLGRLIGQALLDERLLDIRFAAPLVATLAGRQASQSLPAALEEMERVDSALARQLQALAASTGLAQWFEAPESGQRSERQEQEVGPGKIVRESADADER---VSALCLTFCLPGEPEIGLLGPSGVPVKPGVEGLRSDGGLGEDVTRQNLGLYVQRVLQVGLREAVRPQVTAMLTGLQDIVPTGALWVFTEEEIMAMVGGVGSEMGKDPEEILEALACDHGYTRGSQAVRWLVEILAEMTLEEERHFLMFVTGSPGLPVGGLMGCCPRLTVVKKVAEGHARALGQAG---------VDAMLPSASTCTNYLKLPDYSSRAVMRERLLLSLRHGQHSFHLS 609
            +S+ G++   E +V   L+ ++A+++QD +AL +  LP WC QL +  PFL  F  R++YF+ ++FGL RA++RL  QQ+QG DG                   +G +H+           R      +Q+ KV+VSR ++L SA KV+E + S++ +LE E+F E GTG GPT EF++L+S +++   LG+WR            E H D               GL+P+PWS  TG                +GG+  K +  F  LGR++ +AL D RLLD+  +      + G++        L ++   D+ L + LQ L A     Q+ E+ +                 + ES D   R   V  LCL F LPG PE  L        K G           E+V   NL  Y+  V+   ++  +R Q+ A  +G   +    AL +F+  E+  ++ G   E+ K PE +++ +  DHG+T  S  +  L+EI+ E T E++R F  FVTG+P LP GGL    P+LT+V+K    H+ + G A           D  LPS  TC NYLKLP YS++ +M ++LL ++  GQ SF LS
Sbjct: 1330 LSTTGIKIPSEEFVNSKLTPKLARQIQDALALCSGSLPSWCYQLTKACPFLFPFETRRQYFYSTAFGLSRALYRL--QQQQGADG-------------------NGSTHE-----------RAVRVGRLQRQKVRVSRNRILDSAAKVMEMYSSQKAVLEVEYFGEVGTGLGPTLEFYTLISHDLQKLGLGMWRSGLSLTSNEHSVEVHMDNKLSRSNGDLVQAPLGLFPRPWSPHTGTV--------------DGGQFCKAIEYFRLLGRVMAKALQDGRLLDLPLSMAFYKLVLGQELD------LYDILSFDAELGKTLQELQALVSRKQYIESIKDQN--------------LDESYDMHFRGTPVEDLCLDFTLPGYPEYIL--------KAG----------DENVDLSNLEEYISLVVDATVKTGIRQQMEAFRSGFNQVFDFSALQIFSPSELDYLLCG-RRELWK-PETLVDHIKFDHGFTSKSPPIIHLLEIMGEFTPEQQRAFCQFVTGAPRLPAGGLASLNPKLTIVRK----HSSSAGNAAHNSNAPSESADEDLPSVMTCANYLKLPPYSTKEIMSKKLLYAINEGQGSFDLS 1846          
BLAST of EWM23921.1 vs. NCBI_GenBank
Match: gi|723736120|ref|XP_010327414.1| (PREDICTED: E3 ubiquitin-protein ligase UPL3 [Solanum lycopersicum])

HSP 1 Score: 281.182 bits (718), Expect = 3.453e-78
Identity = 194/600 (32.33%), Postives = 293/600 (48.83%), Query Frame = 0
Query:   49 VREECWVIKPLSERMAQELQDPVALATQQLPGWCDQLLRYGPFLLQFRVRKEYFHLSSFGLGRAVHRLLQQQRQGMDGQGGGGGGGGEGGGTGRHASHGHSHQGSHHHHHHHQYRRAPTSAVQQLKVQVSRRKLLASAEKVLEEHGSRRVLLETEFFNEPGTGSGPTAEFFSLVSKEMRSPNLGLWRG-----------ESHHD---------------GLYPQPWSDPTGGSEERMKDQKGGGGRPEGGRGQK-LRQFACLGRLIGQALLDERLLDIRFAAPLVATLAGRQASQSLPAALEEMERVDSALARQLQALAASTGLAQWFEAPESGQRSERQEQEVGPGKIVRESADADER---VSALCLTFCLPGEPEIGLLGPSGVPVKPGVEGLRSDGGLGEDVTRQNLGLYVQRVLQVGLREAVRPQVTAMLTGLQDIVPTGALWVFTEEEIMAMVGGVGSEMGKDPEEILEALACDHGYTRGSQAVRWLVEILAEMTLEEERHFLMFVTGSPGLPVGGLMGCCPRLTVVKKVAEGHARALGQAG---------VDAMLPSASTCTNYLKLPDYSSRAVMRERLLLSLRHGQHSFHLS 609
            +  E +V   L+ ++A+++QD +AL +  LP WC QL +  PFL  F  R++YF+ ++FGL RA++RL  QQ+QG DG                   +G +H+           R      +Q+ KV+VSR ++L SA KV+E + S++ +LE E+F E GTG GPT EF++L+S +++   LG+WR            E H D               GL+P+PWS  TG                +GG+  K +  F  LGR++ +AL D RLLD+  +      + G++        L ++   D+ L + LQ L A     Q+ E+ +                 + ES D   R   V  LCL F LPG PE  L        K G           E+V   NL  Y+  V+   ++  +R Q+ A  +G   +    AL +F+  E+  ++ G   E+ K PE +++ +  DHG+T  S  +  L+EI+ E T E++R F  FVTG+P LP GGL    P+LT+V+K    H+ + G A           D  LPS  TC NYLKLP YS++ +M ++LL ++  GQ SF LS
Sbjct: 1337 IPSEEFVNSKLTPKLARQIQDALALCSGSLPSWCYQLTKACPFLFPFETRRQYFYSTAFGLSRALYRL--QQQQGADG-------------------NGSTHE-----------RAVRVGRLQRQKVRVSRNRILDSAAKVMEMYSSQKAVLEVEYFGEVGTGLGPTLEFYTLISHDLQKLGLGMWRSGLSLTSNEHSVEVHIDNKLSRSDGDLVQAPLGLFPRPWSPHTGTV--------------DGGQFYKAIEYFRLLGRVMAKALQDGRLLDLPLSMAFYKLVLGQELD------LYDILSFDTELGKTLQELQALVSRKQYIESIKDQN--------------LDESYDMHFRGTPVEDLCLDFTLPGYPEYIL--------KAG----------DENVDLSNLEEYISLVVDATVKTGIRQQMEAFRSGFNQVFDFSALQIFSPSELDYLLCG-RRELWK-PETLVDHIKFDHGFTSKSPPIIHLLEIMGEFTPEQQRAFCQFVTGAPRLPAGGLASLNPKLTIVRK----HSSSAGNAAQNSNAPSESADEDLPSVMTCANYLKLPPYSTKEIMSKKLLYAINEGQGSFDLS 1846          
BLAST of EWM23921.1 vs. NCBI_GenBank
Match: gi|565403053|ref|XP_006366981.1| (PREDICTED: E3 ubiquitin-protein ligase UPL3-like [Solanum tuberosum])

HSP 1 Score: 280.026 bits (715), Expect = 7.877e-78
Identity = 194/604 (32.12%), Postives = 298/604 (49.34%), Query Frame = 0
Query:   44 VSSGGVR--EECWVIKPLSERMAQELQDPVALATQQLPGWCDQLLRYGPFLLQFRVRKEYFHLSSFGLGRAVHRLLQQQRQGMDGQGGGGGGGGEGGGTGRHASHGHSHQGSHHHHHHHQYRRAPTSAVQQLKVQVSRRKLLASAEKVLEEHGSRRVLLETEFFNEPGTGSGPTAEFFSLVSKEMRSPNLGLWRG-----------ESHHD---------------GLYPQPWSDPTGGSEERMKDQKGGGGRPEGGRGQK-LRQFACLGRLIGQALLDERLLDIRFAAPLVATLAGRQASQSLPAALEEMERVDSALARQLQALAASTGLAQWFEAPESGQRSERQEQEVGPGKIVRESADADERVSALCLTFCLPGEPEIGLLGPSGVPVKPGVEGLRSDGGLGEDVTRQNLGLYVQRVLQVGLREAVRPQVTAMLTGLQDIVPTGALWVFTEEEIMAMVGGVGSEMGKDPEEILEALACDHGYTRGSQAVRWLVEILAEMTLEEERHFLMFVTGSPGLPVGGLMGCCPRLTVVKKVAEGHARALGQAG---------VDAMLPSASTCTNYLKLPDYSSRAVMRERLLLSLRHGQHSFHLS 609
            +S+ G++   E +V   L+ ++A+++QD +AL +  LP WC QL +  PFL  F  R++YF+ ++FGL RA++RL  QQ+QG DG                   +G +H+           R      +Q+ KV+VSR ++L SA KV+E + S++ +LE E+F E GTG GPT EF++L+S +++   LG+WR            E H D               GL+P+PWS  TG                +GG+  K +  F  LGR++ ++L D RLLD+  +      + G++        L ++   DS L + LQ L A     Q+ E+         ++Q +     +R        V  LCL F LPG PE  L        K G           E+V   NL  Y+  V+   ++  +R Q+ A  +G   +    AL +F+  E+  ++ G   E+ K PE +++ +  DHG+T  S  +  L+EI+ E T E++R F  FVTG+P LP GGL    P+LT+V+K    H+ + G A           D  LPS  TC NYLKLP YS++ +M ++LL ++  GQ SF LS
Sbjct: 1329 LSTTGIKIPSEEFVNSKLTPKLARQIQDALALCSGSLPSWCYQLTKACPFLFPFETRRQYFYSTAFGLSRALYRL--QQQQGADG-------------------NGSTHE-----------RAVRVGRLQRQKVRVSRNRILDSAAKVMEMYSSQKAVLEVEYFGEVGTGLGPTLEFYTLISHDLQELGLGMWRSGLSLTSNEHSMEVHIDNKLSRSDRDLVQAPLGLFPRPWSPHTGTV--------------DGGQFCKAIEYFRLLGRVMAKSLQDGRLLDLPLSMAFYKLVLGQELD------LYDILSFDSELGKTLQELQALVSRKQYIESI--------KDQNLDKSYDMRFRGTP---VEDLCLDFTLPGYPEYVL--------KAG----------DENVDLSNLEEYISLVVDATVKTGIRQQMEAFRSGFNQVFDFSALQIFSPSELDYLLCG-RRELWK-PETLVDHIKFDHGFTSKSPPIIHLLEIMGEFTPEQQRAFCQFVTGAPRLPAGGLAALNPKLTIVRK----HSSSAGNAAHSSNAPSESADEDLPSVMTCANYLKLPPYSTKEIMSKKLLYAINEGQGSFDLS 1845          
BLAST of EWM23921.1 vs. NCBI_GenBank
Match: gi|922855106|gb|KOO23585.1| (e3 ubiquitin-protein ligase upl3 [Chrysochromulina sp. CCMP291])

HSP 1 Score: 267.7 bits (683), Expect = 2.872e-77
Identity = 202/583 (34.65%), Postives = 277/583 (47.51%), Query Frame = 0
Query:   54 WVIKPLSERMAQELQDPVALATQQLPGWCDQLLRYGPFLLQFRVRKEYFHLSSFGLGRAVHRLLQQQRQGMDGQGGGGGGGGEGGGTGRHASHGHSHQGSHHHHHHHQYRRAPTSAVQQLKVQVSRRKLLASAEKVLEEHGSRRVLLETEFFNEPGTGSGPTAEFFSLVSKEMRSPNLGLWRGESHHD--------------------------GLYPQPWSDPTGGSEERMKDQKGGGGRPEGGRGQKLRQFACLGRLIGQALLDERLLDIRFAAPLVATLAGRQASQSLPAALEEMERVDSALARQLQALAASTGLAQWFEAPESGQRSERQEQEVGPGKIVRESADAD-ERVSALCLTFCLPGEPEIGLLGPSGVPVKPGVEGLRSDGGLGEDVTRQNLGLYVQRVLQVGLREAVRPQVTAMLTGLQDIVPTGALWVFTEEEIMAMVGGVGSEMGKDPEEILEALACDHGYTRGSQAVRWLVEILAEMTLEEERHFLMFVTGSPGLPVGGLMGCCPRLTVVKKVAEGHARALGQAGVDAMLPSASTCTNYLKLPDYSSRAVMRERLLLSLRHGQHSFHLS 609
            +V + L+ ++ ++L DP+AL  + LP WC  L    P L  F  R+     ++FGL RA+ RL QQ  Q             EG      AS   S +G+       +  R P       KV++SR +++ SA KV++ + +++  LE E+F E GTG GPT EF++LVS+E+R   L LW  ES                             GLYP+P +    GS               G   + L+ F  +G+ + +A+LD RL+D+ F       L G       P +L ++  V+ +LA QLQ L     LA         QR+        P     ++   D   V  L L   LPG PEI L                 DGG   DVT  N+G YVQRVL V L EAV  Q+ A   G   + P   L  F   E+  ++   GS+   +   I+E L  DHGYTR S+A+ +L+EIL EM+  E   FL FVTGSP LPVGGL    PRLT+V+K  E           DA LPS  TC NY+KLPDYSS+ VM++RL  ++  GQ +F+LS
Sbjct:  152 FVNRKLNAKLQRQLADPLALCARALPSWCASLASGCPELFAFEARRLLLQSTAFGLSRALQRL-QQHSQ-------------EGAAAPNDASA--SERGAEL-----RLGRLPRQ-----KVRISRSRVVDSALKVIDLYAAQKASLEVEYFGEAGTGLGPTLEFYTLVSRELRRSELRLWVDESASAASAKEVSDMDKIKTGDEEASYVYAACGLYPRPIAQGADGS---------------GVPARTLQLFGFMGKFVAKAMLDNRLVDLPFCQTFYKQLLGE------PLSLADLAEVNPSLASQLQKL---QRLAH--------QRTALLRGGAKPSDASVKALKLDGVEVGDLGLDLTLPGAPEIELC---------------PDGG-ARDVTLDNVGEYVQRVLDVYLVEAVLAQIKAFREGFSAVFPIEHLSAFAPSELDCVLN--GSKEAWEVSTIVEYLKFDHGYTRASKAIGFLLEILCEMSPGEVATFLKFVTGSPRLPVGGLARLNPRLTIVQKRPEDGISP------DAYLPSVMTCANYVKLPDYSSKVVMKQRLFTAINEGQGAFYLS 652          
BLAST of EWM23921.1 vs. NCBI_GenBank
Match: gi|674943234|emb|CDX90283.1| (BnaA08g17010D [Brassica napus])

HSP 1 Score: 271.937 bits (694), Expect = 3.008e-77
Identity = 185/600 (30.83%), Postives = 285/600 (47.50%), Query Frame = 0
Query:   44 VSSGGVREECWVIKPLSERMAQELQDPVALATQQLPGWCDQLLRYGPFLLQFRVRKEYFHLSSFGLGRAVHRLLQQQRQGMDGQGGGGGGGGEGGGTGRHASHGHSHQGSHHHHHHHQYRRAPTSAVQQLKVQVSRRKLLASAEKVLEEHGSRRVLLETEFFNEPGTGSGPTAEFFSLVSKEMRSPNLGLWRGESHHD----------------------------GLYPQPWSDPTGGSEERMKDQKGGGGRPEGGRGQKLRQ-FACLGRLIGQALLDERLLDIRFAAPLVATLAGRQASQSLPAALEEMERVDSALARQLQALAASTGLAQWFEAPESGQRSERQEQEVGPGKIVRESADADERVSALCLTFCLPGEPEIGLLGPSGVPVKPGVEGLRSDGGLGEDVTRQN-LGLYVQRVLQVGLREAVRPQVTAMLTGLQDIVPTGALWVFTEEEIMAMVGGVGSEMGKDPEEILEALACDHGYTRGSQAVRWLVEILAEMTLEEERHFLMFVTGSPGLPVGGLMGCCPRLTVVKKVAEGHARALGQAG----VDAMLPSASTCTNYLKLPDYSSRAVMRERLLLSLRHGQHSFHLS 609
             ++  V  E ++   L+ ++A+++QD +AL +  LP WC QL    PFL  F+ R++YF+ ++FGL RA++RL  QQ+QG DG G                                  R      +Q+ KV+VSR ++L SA KV+E + S++ +LE E+F E GTG GPT EF++L+S +++  +LG+WR  S                               GL+P+PW      S              EG R  K+ + F  LGR++ +AL D RL+D+  +      + G++        L ++   D+ L + LQ L    G   + EA      S       G   +    +    R+  LCL F LPG PE  +L P                  G+D+   N L  Y+  V+   ++  V  Q+ A  +G   +    +L +FT  E+  ++   G     + E ++E +  DHGYT  S A+ +L+EI+ E+T +++R F  FVTG+P LP GGL    PRLT+V+K++     A    G     D  LPS  TC NYLKLP YS++ +M ++LL ++  GQ SF LS
Sbjct:  337 TTAAKVSHEEFINSKLTPKLARQIQDALALCSGSLPSWCYQLTTACPFLFPFQTRRQYFYSTAFGLSRALNRL--QQQQGADGSGS------------------------------TNEREMRIGRLQRQKVRVSRNRILDSAAKVMEMYSSQKAVLEVEYFGEVGTGLGPTLEFYTLLSHDLQKVSLGMWRSNSGDKLSMQTDRDEIQDGKSAAARDRDIVQAPLGLFPRPWPSTADVS--------------EGSRFHKVVEYFRLLGRVMAKALQDGRLMDVPLSTAFYKLILGQELD------LHDVILFDAELGKTLQELRVLVGRKHYLEAGGGDNSS-------GISDLCLRGS----RIEDLCLDFTLPGYPEY-ILRP------------------GDDIVDINSLEDYISLVVDATVKRGVARQIEAFRSGFNQVFDIKSLQIFTPSELDYLL--CGRRELWEAETLVEHIKFDHGYTAKSPAIIFLLEIMGELTADQQRAFCQFVTGAPRLPPGGLAVLNPRLTIVRKLSSTSNAAANGTGASETADDDLPSVMTCANYLKLPPYSTKEIMYKKLLYAINEGQGSFDLS 852          
The following BLAST results are available for this feature:
BLAST of EWM23921.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585105206|gb|EWM23921.1|0.000e+0100.00ubiquitin-protein ligase, partial [Nannochloropsis... [more]
gi|831760331|ref|XP_012749920.1|3.255e-8332.34hypothetical protein SAMD00019534_102150 [Acytoste... [more]
gi|284019004|gb|ADB64456.1|4.856e-7932.67KAKTUS 1, partial [Artemisia annua][more]
gi|929766289|ref|XP_014158125.1|1.439e-7832.55hypothetical protein SARC_03555 [Sphaeroforma arct... [more]
gi|674921136|emb|CDY12090.1|1.739e-7831.00BnaC03g60060D [Brassica napus][more]
gi|970057823|ref|XP_015055581.1|2.967e-7832.29PREDICTED: E3 ubiquitin-protein ligase UPL3-like [... [more]
gi|723736120|ref|XP_010327414.1|3.453e-7832.33PREDICTED: E3 ubiquitin-protein ligase UPL3 [Solan... [more]
gi|565403053|ref|XP_006366981.1|7.877e-7832.12PREDICTED: E3 ubiquitin-protein ligase UPL3-like [... [more]
gi|922855106|gb|KOO23585.1|2.872e-7734.65e3 ubiquitin-protein ligase upl3 [Chrysochromulina... [more]
gi|674943234|emb|CDX90283.1|3.008e-7730.83BnaA08g17010D [Brassica napus][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6773rna6773Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications