rna6772, rna6772 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna6772
Unique Name	rna6772
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2365
Alignment location	CM002469.1:464392..466401 +

Link to JBrowse

Properties


Property Name	Value
Product	transmembrane protein
Orig transcript id	gnl\|cribi\|Naga_100082g2.9359.mrna
Orig protein id	gnl\|cribi\|Naga_100082g2.9359
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002469.1	supercontig	CM002469.1:464392..466401 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100082g2	gene6546	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna6772	rna6772-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM23927.1	cds6756	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002469.1:464392..466401+
coding sequence from alignment at CM002469.1:464392..466401+

mRNA sequence

>rna6772 ID=rna6772|Name=rna6772|organism=Nannochloropsis gaditana|type=mRNA|length=2365bp
GACGCTTCAACCTCTGGTATCGTATAGGACACACCTTTGTTTGAGTGAGC
CACTCGTCTTCCTAATGAATCACACACTTGCGTGATTACAGGTTTGACAC
ATGCTATCATGCGGCCTTGACAGGTTCCCTAATTCCCTTCTTATTTGCAT
CTAGTTCGCTTCGCACACCTTGGTCACAAGTGCCTTCGATTCCTAAGCGC
TGCCGTCTCCTTCGAGATGGAGGCCGTGAAAAATAGAGGTGCGAATGAAG
ATGTACATCAATTTGATCGGAATCGCTTCATAGCTAATCCATTCCCGAAG
GATCCTCCTGCGTTATCTCCGCTCGCCTTGCTTAACCCCCGGGAGACGCA
GACGTTGAAAGATCGCATGTCACACGCTTGGGAGCAAATCTTGCGGCAAA
CAGACCCCCAGAAGGAGAAGGACTATACTATTTACACTGGTTCAGCAGGT
ATTGGATATCTGGCACTGCATAGCGCGCTTCTTGTAGAAAGCGCCGATCC
GAGGCGTCGTCACTTTGTCGACATCGCCGGGAACTACCTACGAGGGGCAC
AGGCCACATTGGAGGGGCGCTTGCGGCAAGGGCGCCATGAGGACATTAGC
TTCATTCTAGGCACACCAGGCGTGTACGCGCCTTTGGCTGTTCTCCGCAG
GCTACAAGGTAAATCTAATGACGCAGTTGAAGCGTGCATTCAGCGCGTCC
TCGATCTGGCGCCACTTTTCCTGAATCAGACGCACCATCATCCCCGTCGT
CAGCACCCTCACTACGAATTTGAAATTTTATACGGTGAAAGTGGGTACTT
GACGTCTTTGTTATACCTGAATAGCAACTTTCCAGGCCGCATTCCCGATC
AGCTTTTGAGCGAAGTGACAGATCACATAATTAGCGGTGCGGAAGAAGGC
CCCGGTGGGGCCCTTCTCTGGGCGTGGCACGGCAAAGAATACTTGGGAGC
TGCTCATGGTGTGAGTGGTATCTTGTTGGCTTTGCTGGATGCGCATTTGC
AAGGGCTGCGCTTGCCAGATGTTGTGTTGGAGCGCATCCAATGCACTGTC
AACTACTTGTACTCGCTGCGCCTGCCATCCGGAAATTATCCCACCCGTCC
GAGCAAAGAGTGTGACGATCGGCTTGTCCAATGGTGTCATGGTGCGCCGG
GAATTCTTTTACTTTTCGTTAAAGCGTACGAAGTTTTTGGTCAGCCGAAA
TATTTGGCGTGGGCGGAGCTAGCTGCTGACGTTGTGTGGATGCGCGGTCT
TCTTCGCAAGGGCAATGGCTTATGTCATGGGGTGGCGGGAAATGCCTACT
GTTTCTTGGCGGTATTCCGTTGTACCGATAACGATATTTACTTGCATCGG
GCGCGTGTTTTTGCTTTAGCTGCTCAGGACGACATCGTCGCTGCGCATCA
AGACACCCCTGACCATCCTATGTCCCTCTTCGAGGGATTGGGGGGACTCC
TTGCGCTTTACGCGGACTTGTTGGAAGGAGACCCACGTGAAGCGCTTTTT
CCCGCATTTGAGACGAGAGGGGTACGTTCGGGAACCGGAATATCGCACAA
GGAAGAGTCATATGGAGACGGAGAAGCATAGGCGGAGAAAGCAGTGAGTT
GGCCTCCCGCATGCACCGATTGTGGTGTAGTGGTCGGTAATTCAGAAAGT
TTGAATGAGGAAGAGGATTTGTAGTAGGATAAAATTGATTCATTGGAAAT
AATGCTATATTGAATCATACATGGCTTCATATAACGGTCCGGCAGCTACT
ATTGGCGTGTCGGCAGGCACTTTTGCATAGACGGCCGCCACACAACACAA
AAAGGATGCATATAACATTATCATACAGCCATTGCACCACTTTTCATTGA
ATAGAAATTGTCCGATGTCTCGCTTTAGCCTTCGTCTTGATTCGATCTGT
CCTTTTTGGTCTGCTACCTTCATTTAACTTGAAGCCACGCTTGCACGGTT
GTCATGAAGGCGATACCTGAACAAACAACGATAAATATTGTAAGACGGGT
GAAATCTTTCTGGATCCTCTCCAACCGCCAGCGAAGTACACGCTGGTCGC
CGTCCATCTTGTTCATCCATTCGTCGAGGCGGTCCACGATTTCTTCTGCA
GATGTGTTGTATCATGGTAGAATGTTACAAAGCAGACAGCCTAAAATGTT
CCATGATGGCACCAAATATGAGGCTTAAAAATTCAATCATGTTGAAGAAA
CATCATTCCACTCGTCCCTTGAAGCTTTTCTGCTTTGCGATGAATTTGAA
GTCACAAGCGTAGACTCGCAAGTTAATAATTCTATAGGCACATCTCTGAC
GACGAATGAAAATTTGATTTAAATGCCACGTCGCTGTACATGCTGTCTGC
AGGATTTGCTCAGTT

protein sequence of rna6772

>rna6772-protein ID=rna6772-protein|Name=rna6772|organism=Nannochloropsis gaditana|type=polypeptide|length=484bp
MGGLHHAVVAITGICAGMAVLLSAALIQQHLTHFSKPLVQSKIVGILWMV
PIYSVQSWLSLSFKRYALYLDMFRDCYEAYVLYLFLALLVAYLGDGEEER
VVALLQHQPRVKHIMPFKLCLGGGEVPHGADFLRFCKFGTMQYIVLKPAC
TLAAVILAACGLYGEGSFALNRFWIYQTLIMNVSVGYAFYCLGLFYVLLH
GPLEAHNPVPKFLCIKAVLFLSFWQGVVIAALVRLGLLPHFGEWTTQNVA
MAVQEVLICVEMMLVAFAHQYAFPVAEYVGAPAMRTGLLSDHFSHTTALR
DFNEVMPVLLPSNFTPGLAQSIDRRGEIGLAGGWETGDGNRSCPSQPALH
KEVTEFSSRPGQRRSRQSSSQDLGADFANGSKGGATGEELESAPARKLGV
FYGFEALGPHRDLNSGSYSIPGSSSATTLSSPKNNPRAPADAGVGGGKHE
SFGGEGPCLPEEDRPMLSKGEALALNTFPWRLNG

mRNA from alignment at CM002469.1:464392..466401+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna6772 ID=rna6772|Name=rna6772|organism=Nannochloropsis gaditana|type=mRNA|length=2010bp|location=Sequence derived from alignment at CM002469.1:464392..466401+ (Nannochloropsis gaditana)
GTACGCGTTCGCCCCAAGCGTCTGGATGCTGAAGCAAGATGTCACCCCTT
TTCATCAGGTCGCTTATACAGCTCAGTGCAAAGACGTTACATTCGCCTCA
CACAGTTTCGTGCGAAgatctcccccccccattaTCTTCGCTTTGCGCAC
CGCATGTAAGCCTCTGTCATCGGACATTCCACAGCTCTGCCACGGGGCGG
CAGCGAAGCAAGGGAATCAGCAGAGGTCGGGTCGTCTTGGAAGCTTCTTC
TACGTTCCTCTCTCGCTTTGGCAACTGGCGTTCCCCTATTATAAATGGGA
GGTCTACATCACGCTGTGGTTGCCATCACAGGCATATGCGCGGGAATGGC
AGTTTTGCTTTCGGCAGCTCTGATACAGCAACACCTCACTCATTTCTCCA
AGCCCCTGGTGCAGAGTAAAATCGTGGGCATTCTGTGGATGGTTCCCATC
TACAGTGTGCAGAGCTGGCTGTCGCTATCGTTTAAGCGGTACGCTCTTTA
TTTGGACATGTTTCGGGATTGCTACGAAGCCTACGTCCTGTACCTGTTTC
TGGCGTTACTTGTTGCCTACttgggggacggggaggaagaacgggTAGTT
GCACTCCTCCAACACCAGCCCCGCGTGAAGCACATCATGCCCTTCAAGTT
ATGCCTCGGTGGGGGCGAAGTGCCACATGGCGCGGACTTCTTAAGGTTTT
GCAAGTTCGGGACCATGCAGTATATTGTGCTGAAGCCGGCGTGCACGCTG
GCAGCTGTCATCCTGGCCGCCTGCGGATTGTACGGAGAGGGCTCCTTTGC
TCTGAACCGATTCTGGATATATCAAACTCTTATCATGAACGTGTCGGTCG
GGTACGCCTTTTACTGCTTGGGTCTCTTTTATGTGCTTCTGCACGGGCCC
CTGGAGGCTCACAACCCGGTGCCCAAGTTCCTTTGCATCAAagccgtcct
cttcctctccttctggcaGGGCGTCGTCATAgccgccctcgtccgcctgg
GCCTGCTTCCTCATTTCGGAGAATGGACGACCCAGAACGTGGCTATGGCC
GTCCAGGAGGTGCTGATTTGCGTTGAGATGATGCTTGTGGCCTTCGCCCA
CCAATACGCCTTCCCCGTGGCCGAGTACGTCGGTGCTCCCGCCATGCGCA
CGGGCCTCCTCTCGGATCACTTCTCCCACACCACAGCGCTAAGGGACTTC
AACGAGGTCATGCCTGTCCTTCTGCCGTCCAACTTCacccccggcctcgc
ccagAGCATCGATCGCCGCGGTGAGATAGGGCTAGCAGGCGGCTGGGAGA
CGGGCGACGGAAATAGATCTTGTCCTTCGCAACCTGCCTTGCACAAAGAA
GTCACGGAGTTCTCCTCACGACCTGGACAGCGAAGGTCTCGACAAAGCAG
CAGTCAAGACCTGGGGGCGGACTTCGCGAATGGAAGTAAAGGAGGGGCAA
CAGGGGAGGAACTCGAGTCAGCCCCAGCGCGAAAGCTTGGCGTATTTTAT
GGATTTGAAGCCCTTGGGCCGCATCGAGACTTAAATAGCGGGTCCTACTC
CATACCCGGATCTTCTTCAGCCACCACGCTGTCCTCACCTAAGAACAATC
CACGTGCACCAGCAGATGCTGGCGTTGGAGGGGGCAAGCACGAAAGTTTT
GGCGGTGAAGGCCCGTGCCTGCCAGAAGAGGATAGGCCCATGCTAAGCAA
AGGCGAGGCATTGGCTTTAAATACCTTTCCCTGGCGCTTAAATGGATGAA
CAATCTTCATGTGACCTGCGTTCGTTCATCAGAGAGGGGCGCGCATATCG
ATCGAAAAGGGGCTTCCAACCGGCTAAAGAGTCTGAGCGTCTTTTGCACA
TATTGAAAATGAATGAACGTATACAAACAAAAGTAACAAACAGCGTCGTG
ACCAAGGGTGTACTTGATAGCGTCCTTCATGCTCTTGTCAGCGATATTCT
TTGGTGCAAGACTCTTACAACATCAGATGCCGCCCAAGATAATCAAGAAG
GAACCGCGCC

Coding sequence (CDS) from alignment at CM002469.1:464392..466401+

>rna6772 ID=rna6772|Name=rna6772|organism=Nannochloropsis gaditana|type=CDS|length=1455bp|location=Sequence derived from alignment at CM002469.1:464392..466401+ (Nannochloropsis gaditana)
ATGGGAGGTCTACATCACGCTGTGGTTGCCATCACAGGCATATGCGCGGG
AATGGCAGTTTTGCTTTCGGCAGCTCTGATACAGCAACACCTCACTCATT
TCTCCAAGCCCCTGGTGCAGAGTAAAATCGTGGGCATTCTGTGGATGGTT
CCCATCTACAGTGTGCAGAGCTGGCTGTCGCTATCGTTTAAGCGGTACGC
TCTTTATTTGGACATGTTTCGGGATTGCTACGAAGCCTACGTCCTGTACC
TGTTTCTGGCGTTACTTGTTGCCTACttgggggacggggaggaagaacgg
gTAGTTGCACTCCTCCAACACCAGCCCCGCGTGAAGCACATCATGCCCTT
CAAGTTATGCCTCGGTGGGGGCGAAGTGCCACATGGCGCGGACTTCTTAA
GGTTTTGCAAGTTCGGGACCATGCAGTATATTGTGCTGAAGCCGGCGTGC
ACGCTGGCAGCTGTCATCCTGGCCGCCTGCGGATTGTACGGAGAGGGCTC
CTTTGCTCTGAACCGATTCTGGATATATCAAACTCTTATCATGAACGTGT
CGGTCGGGTACGCCTTTTACTGCTTGGGTCTCTTTTATGTGCTTCTGCAC
GGGCCCCTGGAGGCTCACAACCCGGTGCCCAAGTTCCTTTGCATCAAagc
cgtcctcttcctctccttctggcaGGGCGTCGTCATAgccgccctcgtcc
gcctggGCCTGCTTCCTCATTTCGGAGAATGGACGACCCAGAACGTGGCT
ATGGCCGTCCAGGAGGTGCTGATTTGCGTTGAGATGATGCTTGTGGCCTT
CGCCCACCAATACGCCTTCCCCGTGGCCGAGTACGTCGGTGCTCCCGCCA
TGCGCACGGGCCTCCTCTCGGATCACTTCTCCCACACCACAGCGCTAAGG
GACTTCAACGAGGTCATGCCTGTCCTTCTGCCGTCCAACTTCacccccgg
cctcgcccagAGCATCGATCGCCGCGGTGAGATAGGGCTAGCAGGCGGCT
GGGAGACGGGCGACGGAAATAGATCTTGTCCTTCGCAACCTGCCTTGCAC
AAAGAAGTCACGGAGTTCTCCTCACGACCTGGACAGCGAAGGTCTCGACA
AAGCAGCAGTCAAGACCTGGGGGCGGACTTCGCGAATGGAAGTAAAGGAG
GGGCAACAGGGGAGGAACTCGAGTCAGCCCCAGCGCGAAAGCTTGGCGTA
TTTTATGGATTTGAAGCCCTTGGGCCGCATCGAGACTTAAATAGCGGGTC
CTACTCCATACCCGGATCTTCTTCAGCCACCACGCTGTCCTCACCTAAGA
ACAATCCACGTGCACCAGCAGATGCTGGCGTTGGAGGGGGCAAGCACGAA
AGTTTTGGCGGTGAAGGCCCGTGCCTGCCAGAAGAGGATAGGCCCATGCT
AAGCAAAGGCGAGGCATTGGCTTTAAATACCTTTCCCTGGCGCTTAAATG
GATGA

Synonyms

Publications