rna677, rna677 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna677
Unique Name	rna677
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1052
Alignment location	CM002456.1:145757..147842 +

Link to JBrowse

Properties


Property Name	Value
Product	ribosomal protein l19
Orig transcript id	gnl\|cribi\|Naga_100379g2.1021.mrna
Orig protein id	gnl\|cribi\|Naga_100379g2.1021
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002456.1	supercontig	CM002456.1:145757..147842 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100379g2	gene650	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna677	rna677-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM29998.1	cds677	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002456.1:145757..147842+
coding sequence from alignment at CM002456.1:145757..147842+

mRNA sequence

>rna677 ID=rna677|Name=rna677|organism=Nannochloropsis gaditana|type=mRNA|length=1052bp
GCCATTGACGCCGCACGGCTTATTGGGTCTCGTTCTTTCTCGTCCCCTTC
CACATCCCTCCTTCCAGGTTCATGTACGGCCCGCCATACCGGCCACGCGG
AAGACCATATCCACGTCAAGGACGCCGAAATAATGATTCGTATATCATTT
ACGTTCTTCTTTCTACCATATTTCGGTACATCAATGAGCTGGAATACAAA
CCTCCAGTCACGATTGCCTTTTTAACGCTCAATATTATGGTCCACCTCAT
GCCTGAATTTTTCCTCCCATGGGGCTTCGACTTCCGGAGTGTCCGCGACA
TTTGTCTACTGCCCGCACATATCCTCGAGCTTCTACCCTCCTTGTCCTCC
CTCTTTTCCAGCGTCCAGGGAGACACCTTGGGGCGGGGGCTCGGACGGGG
AGGCAGAAACCGACCGCGCTCGGGCAATGTCTGGGCGGAGTTCATTCGGA
ATAATTTCTCCTCCTATCGCTCCTCCTCCGCCTGGTGGTCTCCCTCCATG
CATGACCGCTGGCGTGAAGCTGCATCTCGCATCTTTCTGTCCGCTCTCGT
CCACGGAGACGACGTGCACCTTTACTACAACATGCTCTCCCTCCTCTACA
AAGGCGCCACCCTCGAACGCGCCCTCGGCTCCCTTCCCTTCCTCCGCCTC
GTCTTCTTCGCTTGGGGGGTCTCCCACACACTCATCCTGCTCCTGGCCAC
CTTCCTTCACTCCCTCTCCTTTCCCTCCTCCTCCTTCTACAGCTGCTCCG
TCGGCTTCTCGGCCGTCCTCTTCGCCTTGAAGTACGTATCCTACGCGAGG
GACCCCGACAGTTGGACAACCGTTGCCGGCTTCCGGGTACCCTTAGGGAA
AGCCTCCTGGGTGGAGCTGGTCGTAACCTCCTTCTTGACTCCTAACGCGT
CCTTTCTCGGGCATTTGTGCGGCATTTTGGCGGGAATTCTCATTGAGCCC
GAGATTGCGGGGGAATGCACCGTGCGGGATGAGAGAAAAGTTTGTGCGGT
ACTTGATGCGGAGTGTACGTGTTGGGATGGCTGTGACACCGAAAGAAGGT
AA

protein sequence of rna677

>rna677-protein ID=rna677-protein|Name=rna677|organism=Nannochloropsis gaditana|type=polypeptide|length=220bp
MTTRFSSLGSHHSRTPPLCLFSCPCSHRFTMVNLRIQKRLAASVLKTGKR
KVWLDPNETTEISMANSRQNVRKLIKDGFVLKKPQVIHSRSRYLTRLEAK
RKGRHTGYGKRKGTANARLPMKIVWLRRTRVLRRLLRKYRDAKKVDKHLY
HDLYQRAKGNQFKNKRVLMEAIHKMKAEKARLTQLAAQSEARRAKAKSKT
ERKEKQKMEAAGLAEAEEGK

mRNA from alignment at CM002456.1:145757..147842+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna677 ID=rna677|Name=rna677|organism=Nannochloropsis gaditana|type=mRNA|length=2086bp|location=Sequence derived from alignment at CM002456.1:145757..147842+ (Nannochloropsis gaditana)
GCCTTCTGGTGTCTGTGCTGTGGAAGCTCGCATTTTGCTAGTTTGGTGGC
TTGGTTGGTGGTCATGACCACTCGTTTTTCCAGCCTGGGCTCCCATCACT
CCCGGACCCCTCCCTTAtgtcttttttcttgcccGTGTTCCCACAGGTTT
ACAATGGTGAACCTCCGCATCCAAAAGCGCTTGGCTGCAAGCGTGTTGAA
GACAGGCAAACGTAAAGTATGGCTTGACCCCAACGAAACGACGGAGATCT
CCATGGCCAATTCCCGACAGAACGTCCgcaaggtgaggagggggagtaGT
GAGcaagggacgaggggagaaaggctcACGAAGGACGTGGGAAAACAGAG
CAAGCGATGAGCAGTCGTGAAGGAATGGACTGGGAAtggtgtgagggagg
ggaaggatgatGCACGGAAAAGCTCCCGAGGTTTCGATCGAGCATTGTGG
TGTGGCAGAGAGCATGGCCGtgtccttcgcttcctgTTGCGTGTCGATGG
TGAAGGGCCATTCACCTTGTGGTTCTCACGCGGCTTCCTTCATCCATGTT
GTCTCGTCCTTGATACACAGCTGATCAAGGACGGCTTCGTTTTAAAGAAA
CCGCAAGTAATCCATTCCCGCTCCCGGTACCTGACCCGCCTGGAGGCCAA
GCGCAAGGGCCGTCACACCGGtaagcaaggaagggaaagatcgcgaagag
gagaaaaggggaaatAAACCGCCTGTGGTTCTGGCAGACGCATGGCAGTG
GGAGGGGCTTCTCTCCCAGgacttttccttcccttgggGTAGGGGGAGCc
caagaaggggagaggccgccccctccttctctcagcctcggaagagggga
aagggaaggaggagtgaaTACTGCCGAAATAAGCCCCCAGGAGACGCTCC
ACAGGGCGCGGTAGCTTTGTCGTAGACACCTACTGCTTCGCTCTACTATC
ACTTGTCTCCACATGACCATGCCTGTTGGTTATCCTGGGCTGGAGCTAGG
GCTAGGATTGAGGTTGAAATCAGGAGTGGGGTGAGGAGTAGGGCCCTGAT
CACCCTCTGCACGACGAGTCTGGCAGGCAGGGTGTCCGCCTGATTTTTTG
GCCCCTTGGCCTTGAAATCCCCTCAACCCCTCATCTCGCCCTCCTACTCA
CGCCTCAACCTTAGGCTACGGGAAACGCAAGGGTACGGCCAATGCCCGCC
TGCCTATGAAGATCGTGTGGCTCCGACGCACTCGAGTCCTTCGCCGACTC
CTCCGCAAGTACCGGGACGCCAAGAAGGTGGACAAGCACCTCTACCACGA
CCTCTACCAGCGGtgcgtcttccttcctcccttcctccctccctccacgc
cgcgCCTAGCTCATTCACCGTCTCACCtctatcccctccctccctctctg
cttctttgtctccctccctccctccctccctccctagtGCCAAGGGGAAC
CAGTTTAAGAACAAGCGCGTGCTCATGGAGGCAATCCACAAgatgaaggc
ggagaaggctcGTCTCACTCAGCTCGCCGCGCAATCAGAGGCCCGCCGGG
CAAAGgtgagcgagggaaggaagaggggaaggaaggagggaggagtagCA
CGTATATAATATATGGGGCGCAGGAATTTTGGGAGCTAAGGATGCTTCAA
TGCCCCACTCAaatcccttccccttttgtccctccctcccgtcctccctt
ccgtcctccctcccgcaggcCAAGAGCAAGACAGAGCGAAAGGAGAAGCA
AAAAATGGAGGCCGCGGGACTGGcggaggctgaggaaggaaagtaaAGGG
ACGCTAGCTCACGGAGAgatcgggggagggagggagggagggagggaggg
agggagggagttgaaAAGGCGTATTCTGTTGCTTGCTTTTCGCGGCGCGT
CTCTGCCTTGCAGGATGAGGcaaggcgacccggaggagtggggcgggggg
gcaagagcGCGTACGGAATAAAGTCTCAATACTATCCTCCTCACTGATTT
GGGTAAGGCTTTTTGGGCCCGTTGCCGCGCTACCAGCCCTGCAGCTGCCA
TTGCTTTTGCACTGTGGTCAAATCAATTTTATTTCT

Coding sequence (CDS) from alignment at CM002456.1:145757..147842+

>rna677 ID=rna677|Name=rna677|organism=Nannochloropsis gaditana|type=CDS|length=3315bp|location=Sequence derived from alignment at CM002456.1:145757..147842+ (Nannochloropsis gaditana)
ATGACCACTCGTTTTTCCAGCCTGGGCTCCCATCACTCCCGGACCCCTCC
CTTAtgtcttttttcttgcccGTGTTCCCACAGGTTTACAATGGTGAACC
TCCGCATCCAAAAGCGCTTGGCTGCAAGCGTGTTGAAGACAGGCAAACGT
AAAGTATGGCTTGACCCCAACGAAACGACGGAGATCTCCATGGCCAATTC
CCGACAGAACGTCCgcaagCTGATCAAGGACGGCTTCGTTTTAAAGAAAC
CGCAAGTAATCCATTCCCGCTCCCGGTACCTGACCCGCCTGGAGGCCAAG
CGCAAGGGCCGTCACACCGGCTACGGGAAACGCAAGGGTACGGCCAATGC
CCGCCTGCCTATGAAGATCGTGTGGCTCCGACGCACTCGAGTCCTTCGCC
GACTCCTCCGCAAGTACCGGGACGCCAAGAAGGTGGACAAGCACCTCTAC
CACGACCTCTACCAGCGtGCCAAGGGGAACCAGTTTAAGAACAAGCGCGT
GCTCATGGAGGCAATCCACAAgatgaaggcggagaaggctcGTCTCACTC
AGCTCGCCGCGCAATCAGAGGCCCGCCGGGCAAAGgcCAAGAGCAAGACA
GAGCGAAAGGAGAAGCAAAAAATGGAGGCCGCGGGACTGGcggaggctga
ggaaggaaagtaaATGACCACTCGTTTTTCCAGCCTGGGCTCCCATCACT
CCCGGACCCCTCCCTTAtgtcttttttcttgcccGTGTTCCCACAGGTTT
ACAATGGTGAACCTCCGCATCCAAAAGCGCTTGGCTGCAAGCGTGTTGAA
GACAGGCAAACGTAAAGTATGGCTTGACCCCAACGAAACGACGGAGATCT
CCATGGCCAATTCCCGACAGAACGTCCgcaagCTGATCAAGGACGGCTTC
GTTTTAAAGAAACCGCAAGTAATCCATTCCCGCTCCCGGTACCTGACCCG
CCTGGAGGCCAAGCGCAAGGGCCGTCACACCGGCTACGGGAAACGCAAGG
GTACGGCCAATGCCCGCCTGCCTATGAAGATCGTGTGGCTCCGACGCACT
CGAGTCCTTCGCCGACTCCTCCGCAAGTACCGGGACGCCAAGAAGGTGGA
CAAGCACCTCTACCACGACCTCTACCAGCGtGCCAAGGGGAACCAGTTTA
AGAACAAGCGCGTGCTCATGGAGGCAATCCACAAgatgaaggcggagaag
gctcGTCTCACTCAGCTCGCCGCGCAATCAGAGGCCCGCCGGGCAAAGgc
CAAGAGCAAGACAGAGCGAAAGGAGAAGCAAAAAATGGAGGCCGCGGGAC
TGGcggaggctgaggaaggaaagtaaATGACCACTCGTTTTTCCAGCCTG
GGCTCCCATCACTCCCGGACCCCTCCCTTAtgtcttttttcttgcccGTG
TTCCCACAGGTTTACAATGGTGAACCTCCGCATCCAAAAGCGCTTGGCTG
CAAGCGTGTTGAAGACAGGCAAACGTAAAGTATGGCTTGACCCCAACGAA
ACGACGGAGATCTCCATGGCCAATTCCCGACAGAACGTCCgcaagCTGAT
CAAGGACGGCTTCGTTTTAAAGAAACCGCAAGTAATCCATTCCCGCTCCC
GGTACCTGACCCGCCTGGAGGCCAAGCGCAAGGGCCGTCACACCGGCTAC
GGGAAACGCAAGGGTACGGCCAATGCCCGCCTGCCTATGAAGATCGTGTG
GCTCCGACGCACTCGAGTCCTTCGCCGACTCCTCCGCAAGTACCGGGACG
CCAAGAAGGTGGACAAGCACCTCTACCACGACCTCTACCAGCGtGCCAAG
GGGAACCAGTTTAAGAACAAGCGCGTGCTCATGGAGGCAATCCACAAgat
gaaggcggagaaggctcGTCTCACTCAGCTCGCCGCGCAATCAGAGGCCC
GCCGGGCAAAGgcCAAGAGCAAGACAGAGCGAAAGGAGAAGCAAAAAATG
GAGGCCGCGGGACTGGcggaggctgaggaaggaaagtaaATGACCACTCG
TTTTTCCAGCCTGGGCTCCCATCACTCCCGGACCCCTCCCTTAtgtcttt
tttcttgcccGTGTTCCCACAGGTTTACAATGGTGAACCTCCGCATCCAA
AAGCGCTTGGCTGCAAGCGTGTTGAAGACAGGCAAACGTAAAGTATGGCT
TGACCCCAACGAAACGACGGAGATCTCCATGGCCAATTCCCGACAGAACG
TCCgcaagCTGATCAAGGACGGCTTCGTTTTAAAGAAACCGCAAGTAATC
CATTCCCGCTCCCGGTACCTGACCCGCCTGGAGGCCAAGCGCAAGGGCCG
TCACACCGGCTACGGGAAACGCAAGGGTACGGCCAATGCCCGCCTGCCTA
TGAAGATCGTGTGGCTCCGACGCACTCGAGTCCTTCGCCGACTCCTCCGC
AAGTACCGGGACGCCAAGAAGGTGGACAAGCACCTCTACCACGACCTCTA
CCAGCGtGCCAAGGGGAACCAGTTTAAGAACAAGCGCGTGCTCATGGAGG
CAATCCACAAgatgaaggcggagaaggctcGTCTCACTCAGCTCGCCGCG
CAATCAGAGGCCCGCCGGGCAAAGgcCAAGAGCAAGACAGAGCGAAAGGA
GAAGCAAAAAATGGAGGCCGCGGGACTGGcggaggctgaggaaggaaagt
aaATGACCACTCGTTTTTCCAGCCTGGGCTCCCATCACTCCCGGACCCCT
CCCTTAtgtcttttttcttgcccGTGTTCCCACAGGTTTACAATGGTGAA
CCTCCGCATCCAAAAGCGCTTGGCTGCAAGCGTGTTGAAGACAGGCAAAC
GTAAAGTATGGCTTGACCCCAACGAAACGACGGAGATCTCCATGGCCAAT
TCCCGACAGAACGTCCgcaagCTGATCAAGGACGGCTTCGTTTTAAAGAA
ACCGCAAGTAATCCATTCCCGCTCCCGGTACCTGACCCGCCTGGAGGCCA
AGCGCAAGGGCCGTCACACCGGCTACGGGAAACGCAAGGGTACGGCCAAT
GCCCGCCTGCCTATGAAGATCGTGTGGCTCCGACGCACTCGAGTCCTTCG
CCGACTCCTCCGCAAGTACCGGGACGCCAAGAAGGTGGACAAGCACCTCT
ACCACGACCTCTACCAGCGtGCCAAGGGGAACCAGTTTAAGAACAAGCGC
GTGCTCATGGAGGCAATCCACAAgatgaaggcggagaaggctcGTCTCAC
TCAGCTCGCCGCGCAATCAGAGGCCCGCCGGGCAAAGgcCAAGAGCAAGA
CAGAGCGAAAGGAGAAGCAAAAAATGGAGGCCGCGGGACTGGcggaggct
gaggaaggaaagtaa

Synonyms

Publications