EWM29998.1, cds677 (CDS) Nannochloropsis gaditana

Overview
NameEWM29998.1
Unique Namecds677
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002456.1:145820..146038 +
Alignment locationCM002456.1:146327..146426 +
Alignment locationCM002456.1:146921..147068 +
Alignment locationCM002456.1:147194..147311 +
Alignment locationCM002456.1:147475..147552 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM29998.1
Productribosomal protein l19
Orig transcript idgnl|cribi|Naga_100379g2.1021.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002456.1supercontigCM002456.1:145820..146038 +
CM002456.1supercontigCM002456.1:146327..146426 +
CM002456.1supercontigCM002456.1:146921..147068 +
CM002456.1supercontigCM002456.1:147194..147311 +
CM002456.1supercontigCM002456.1:147475..147552 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0005829cytosol
GO:0005622intracellular
GO:0005840ribosome
Vocabulary: Molecular Function
TermDefinition
GO:0005198structural molecule activity
GO:0003723RNA binding
GO:0003735structural constituent of ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: INTERPRO
TermDefinition
IPR027547Ribosomal_L19/L19e
IPR015972Ribosomal_L19/L19e_dom1
IPR000196Ribosomal_L19/L19e_dom
IPR015974Ribosomal_L19/L19e_dom3
Homology
BLAST of EWM29998.1 vs. NCBI_GenBank
Match: gi|585112608|gb|EWM29998.1| (ribosomal protein l19 [Nannochloropsis gaditana])

HSP 1 Score: 451.055 bits (1159), Expect = 2.065e-160
Identity = 220/220 (100.00%), Postives = 220/220 (100.00%), Query Frame = 0
Query:    1 MTTRFSSLGSHHSRTPPLCLFSCPCSHRFTMVNLRIQKRLAASVLKTGKRKVWLDPNETTEISMANSRQNVRKLIKDGFVLKKPQVIHSRSRYLTRLEAKRKGRHTGYGKRKGTANARLPMKIVWLRRTRVLRRLLRKYRDAKKVDKHLYHDLYQRAKGNQFKNKRVLMEAIHKMKAEKARLTQLAAQSEARRAKAKSKTERKEKQKMEAAGLAEAEEGK 220
            MTTRFSSLGSHHSRTPPLCLFSCPCSHRFTMVNLRIQKRLAASVLKTGKRKVWLDPNETTEISMANSRQNVRKLIKDGFVLKKPQVIHSRSRYLTRLEAKRKGRHTGYGKRKGTANARLPMKIVWLRRTRVLRRLLRKYRDAKKVDKHLYHDLYQRAKGNQFKNKRVLMEAIHKMKAEKARLTQLAAQSEARRAKAKSKTERKEKQKMEAAGLAEAEEGK
Sbjct:    1 MTTRFSSLGSHHSRTPPLCLFSCPCSHRFTMVNLRIQKRLAASVLKTGKRKVWLDPNETTEISMANSRQNVRKLIKDGFVLKKPQVIHSRSRYLTRLEAKRKGRHTGYGKRKGTANARLPMKIVWLRRTRVLRRLLRKYRDAKKVDKHLYHDLYQRAKGNQFKNKRVLMEAIHKMKAEKARLTQLAAQSEARRAKAKSKTERKEKQKMEAAGLAEAEEGK 220          
BLAST of EWM29998.1 vs. NCBI_GenBank
Match: gi|669145958|ref|XP_008608541.1| (50S ribosomal protein L19e [Saprolegnia diclina VS20] >gi|530739972|gb|EQC38214.1| 50S ribosomal protein L19e [Saprolegnia diclina VS20])

HSP 1 Score: 253.447 bits (646), Expect = 2.622e-82
Identity = 134/196 (68.37%), Postives = 162/196 (82.65%), Query Frame = 0
Query:   22 SCPCSHRFT-------MVNLRIQKRLAASVLKTGKRKVWLDPNETTEISMANSRQNVRKLIKDGFVLKKPQVIHSRSRYLTRLEAKRKGRHTGYGKRKGTANARLPMKIVWLRRTRVLRRLLRKYRDAKKVDKHLYHDLYQRAKGNQFKNKRVLMEAIHKMKAEKARLTQLAAQSEARRAKAKSKTERKEKQKMEA 210
              P SH  T       MV+L++QKRLAASVLK GKRKVWLDPNE+TEI++ANSRQN+RKL+KDGFV++KPQVIHSR+R+  R EAKRKGRHTG GKR+GTANARLP K++W+RR RVLRRLLRKYRDAKK+D+H+YHDLY RAKGNQFKNKRVLME IHK+K+E  R   L  QSEAR+ KA++  +RK  +++ A
Sbjct:   20 GAPSSHIITSFAGFNNMVSLKLQKRLAASVLKCGKRKVWLDPNESTEIALANSRQNIRKLVKDGFVIRKPQVIHSRARFTKRNEAKRKGRHTGIGKRRGTANARLPFKVIWMRRMRVLRRLLRKYRDAKKIDRHMYHDLYMRAKGNQFKNKRVLMEVIHKLKSEHIREKALKDQSEARKEKARNARDRKAGKEVAA 215          
BLAST of EWM29998.1 vs. NCBI_GenBank
Match: gi|813177413|ref|XP_012205176.1| (60S ribosomal protein [Saprolegnia parasitica CBS 223.65] >gi|813207115|ref|XP_012210180.1| 60S ribosomal protein [Saprolegnia parasitica CBS 223.65] >gi|641524537|gb|KDO19108.1| 60S ribosomal protein [Saprolegnia parasitica CBS 223.65] >gi|641529891|gb|KDO24039.1| 60S ribosomal protein [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 250.751 bits (639), Expect = 6.992e-82
Identity = 129/173 (74.57%), Postives = 154/173 (89.02%), Query Frame = 0
Query:   31 MVNLRIQKRLAASVLKTGKRKVWLDPNETTEISMANSRQNVRKLIKDGFVLKKPQVIHSRSRYLTRLEAKRKGRHTGYGKRKGTANARLPMKIVWLRRTRVLRRLLRKYRDAKKVDKHLYHDLYQRAKGNQFKNKRVLMEAIHKMKAEKARLTQLAAQSEARRAKAKSKTERK 203
            MV+L++QKRLAASVLK GKRKVWLDPNE+TEI++ANSRQN+RKL+KDGFV++KPQVIHSR+R+  R EAKRKGRHTG GKR+GTANARLP K++W+RR RVLRRLLRKYRDAKK+D+H+YHDLY RAKGNQFKNKRVLME IHK+K+E  R   L  QSEAR+ KA++  +RK
Sbjct:    1 MVSLKLQKRLAASVLKCGKRKVWLDPNESTEIALANSRQNIRKLVKDGFVIRKPQVIHSRARFTKRNEAKRKGRHTGIGKRRGTANARLPFKVIWMRRMRVLRRLLRKYRDAKKIDRHMYHDLYMRAKGNQFKNKRVLMEVIHKLKSEHIREKALKDQSEARKEKARNARDRK 173          
BLAST of EWM29998.1 vs. NCBI_GenBank
Match: gi|1173946488|gb|OQR95014.1| (60S ribosomal protein L19-1 [Thraustotheca clavata])

HSP 1 Score: 249.98 bits (637), Expect = 1.537e-81
Identity = 129/173 (74.57%), Postives = 153/173 (88.44%), Query Frame = 0
Query:   31 MVNLRIQKRLAASVLKTGKRKVWLDPNETTEISMANSRQNVRKLIKDGFVLKKPQVIHSRSRYLTRLEAKRKGRHTGYGKRKGTANARLPMKIVWLRRTRVLRRLLRKYRDAKKVDKHLYHDLYQRAKGNQFKNKRVLMEAIHKMKAEKARLTQLAAQSEARRAKAKSKTERK 203
            MV+L++QKRLAASVLK GKRKVWLDPNE+TEI++ANSRQN+RKL+KDGFV++KPQVIHSR+R+  R EAKRKGRHTG GKR+GTANARLP K++W+RR RVLRRLLRKYRDAKK+D+H+YHDLY RAKGNQFKNKRVLME IHK+K+E  R   L  QSEAR+ KA+   +RK
Sbjct:    1 MVSLKLQKRLAASVLKCGKRKVWLDPNESTEIALANSRQNIRKLVKDGFVIRKPQVIHSRARFTKRNEAKRKGRHTGIGKRRGTANARLPFKVIWMRRMRVLRRLLRKYRDAKKIDRHMYHDLYMRAKGNQFKNKRVLMEVIHKLKSEHIREKTLKDQSEARKEKARVARDRK 173          
BLAST of EWM29998.1 vs. NCBI_GenBank
Match: gi|1173935832|gb|OQR86887.1| (60S ribosomal protein L19-1 [Achlya hypogyna])

HSP 1 Score: 249.98 bits (637), Expect = 1.955e-81
Identity = 129/173 (74.57%), Postives = 153/173 (88.44%), Query Frame = 0
Query:   31 MVNLRIQKRLAASVLKTGKRKVWLDPNETTEISMANSRQNVRKLIKDGFVLKKPQVIHSRSRYLTRLEAKRKGRHTGYGKRKGTANARLPMKIVWLRRTRVLRRLLRKYRDAKKVDKHLYHDLYQRAKGNQFKNKRVLMEAIHKMKAEKARLTQLAAQSEARRAKAKSKTERK 203
            MV+L++QKRLAASVLK GKRKVWLDPNE+TEI++ANSRQN+RKL+KDGFV++KPQVIHSR+R+  R EAKRKGRHTG GKR+GTANARLP K++W+RR RVLRRLLRKYRDAKK+D+H+YHDLY RAKGNQFKNKRVLME IHK+K+E  R   L  QSEAR+ KA+   +RK
Sbjct:    1 MVSLKLQKRLAASVLKCGKRKVWLDPNESTEIALANSRQNIRKLVKDGFVIRKPQVIHSRARFTKRNEAKRKGRHTGIGKRRGTANARLPFKVIWMRRMRVLRRLLRKYRDAKKIDRHMYHDLYMRAKGNQFKNKRVLMEVIHKLKSEHIREKALKDQSEARKEKARVARDRK 173          
BLAST of EWM29998.1 vs. NCBI_GenBank
Match: gi|676391715|ref|XP_009039135.1| (hypothetical protein AURANDRAFT_6947, partial [Aureococcus anophagefferens] >gi|323450303|gb|EGB06185.1| hypothetical protein AURANDRAFT_6947, partial [Aureococcus anophagefferens])

HSP 1 Score: 246.514 bits (628), Expect = 3.092e-80
Identity = 133/173 (76.88%), Postives = 153/173 (88.44%), Query Frame = 0
Query:   31 MVNLRIQKRLAASVLKTGKRKVWLDPNETTEISMANSRQNVRKLIKDGFVLKKPQVIHSRSRYLTRLEAKRKGRHTGYGKRKGTANARLPMKIVWLRRTRVLRRLLRKYRDAKKVDKHLYHDLYQRAKGNQFKNKRVLMEAIHKMKAEKARLTQLAAQSEARRAKAKSKTERK 203
            M +L +QKRLAASVLK GK +VW+DPNET EISMANSRQN+RKLIKDGFV++KP V+HSRSR    L+AKRKGRHTG GKRKGTANAR+PMK++W+RR RVLRRLLRKYR+AKK+D HLYHDLY RAKGNQFKNKRVLME+IHK+K EKAR   LA Q+EAR++KAK KTERK
Sbjct:    1 MSSLSLQKRLAASVLKAGKNRVWMDPNETNEISMANSRQNIRKLIKDGFVIRKPVVVHSRSRCQRHLDAKRKGRHTGLGKRKGTANARMPMKVLWMRRQRVLRRLLRKYREAKKIDHHLYHDLYMRAKGNQFKNKRVLMESIHKLKGEKAREKALADQAEARKSKAKLKTERK 173          
BLAST of EWM29998.1 vs. NCBI_GenBank
Match: gi|695433089|ref|XP_009531099.1| (hypothetical protein PHYSODRAFT_355006 [Phytophthora sojae] >gi|348673851|gb|EGZ13670.1| hypothetical protein PHYSODRAFT_355006 [Phytophthora sojae])

HSP 1 Score: 246.514 bits (628), Expect = 3.759e-80
Identity = 130/172 (75.58%), Postives = 153/172 (88.95%), Query Frame = 0
Query:   31 MVNLRIQKRLAASVLKTGKRKVWLDPNETTEISMANSRQNVRKLIKDGFVLKKPQVIHSRSRYLTRLEAKRKGRHTGYGKRKGTANARLPMKIVWLRRTRVLRRLLRKYRDAKKVDKHLYHDLYQRAKGNQFKNKRVLMEAIHKMKAEKARLTQLAAQSEARRAKAKSKTER 202
            MV+L++QKRLAASVLK GKRK+WLDPNE+ EI++ANSRQN+RKL+KDGFV+KKPQVIHSR+R+  R EAKRKGRHTG GKR+GTANARLP K++W+RR RVLRRLLRKYR+AKK+DKH+YH+LY R+KGNQFKNKRVLME IHKMKAE+ R   L  QSEAR+ KAKS  ER
Sbjct:    1 MVSLKLQKRLAASVLKCGKRKIWLDPNESNEIALANSRQNIRKLVKDGFVIKKPQVIHSRARFTKRNEAKRKGRHTGIGKRRGTANARLPFKVIWMRRIRVLRRLLRKYREAKKIDKHIYHELYMRSKGNQFKNKRVLMETIHKMKAERQREKTLKEQSEARKEKAKSARER 172          
BLAST of EWM29998.1 vs. NCBI_GenBank
Match: gi|325189036|emb|CCA23564.1| (60S ribosomal protein L191 putative [Albugo laibachii Nc14])

HSP 1 Score: 246.899 bits (629), Expect = 4.211e-80
Identity = 128/173 (73.99%), Postives = 153/173 (88.44%), Query Frame = 0
Query:   31 MVNLRIQKRLAASVLKTGKRKVWLDPNETTEISMANSRQNVRKLIKDGFVLKKPQVIHSRSRYLTRLEAKRKGRHTGYGKRKGTANARLPMKIVWLRRTRVLRRLLRKYRDAKKVDKHLYHDLYQRAKGNQFKNKRVLMEAIHKMKAEKARLTQLAAQSEARRAKAKSKTERK 203
            MV+LR+QKRLAASVLK GKRK+WLDPNE+ EI++ANSR+N+RKL+KDGFV+KKPQVIHSR+R+  R EAKRKGRHTG GKR+GTANARLP K++W+RR RVLRRLLRKYR+AKK+D+ LYHDLY R+KGNQFKNKRVLME IHKMKAE+ R   L  QSEAR+ +AK+  ER+
Sbjct:    1 MVSLRLQKRLAASVLKCGKRKIWLDPNESNEIALANSRENIRKLVKDGFVIKKPQVIHSRARFQKRNEAKRKGRHTGIGKRRGTANARLPFKVIWMRRMRVLRRLLRKYREAKKIDRFLYHDLYMRSKGNQFKNKRVLMETIHKMKAERHREKTLREQSEARKERAKNARERR 173          
BLAST of EWM29998.1 vs. NCBI_GenBank
Match: gi|953492844|emb|CEG44790.1| (60s ribosomal protein [Plasmopara halstedii])

HSP 1 Score: 246.128 bits (627), Expect = 5.822e-80
Identity = 130/176 (73.86%), Postives = 156/176 (88.64%), Query Frame = 0
Query:   31 MVNLRIQKRLAASVLKTGKRKVWLDPNETTEISMANSRQNVRKLIKDGFVLKKPQVIHSRSRYLTRLEAKRKGRHTGYGKRKGTANARLPMKIVWLRRTRVLRRLLRKYRDAKKVDKHLYHDLYQRAKGNQFKNKRVLMEAIHKMKAEKARLTQLAAQSEARRAKAKSKTERKEKQ 206
            MV+L++QKRLAASVLK GKRK+WLDPNE+ EI++ANSRQN+RKL+KDGFV+KKPQVIHSR+R+  R EAKRKGRHTG GKR+GTANARLP K++W+RR RVLRRLLRKYR+AKK+DKH+YH+LY R+KGNQFKNKRVLME IHKMKAE+ R   L  QSEAR+ KAK+  +RK K+
Sbjct:    1 MVSLKLQKRLAASVLKCGKRKIWLDPNESNEIALANSRQNIRKLVKDGFVIKKPQVIHSRARFAKRNEAKRKGRHTGIGKRRGTANARLPFKVIWMRRIRVLRRLLRKYREAKKIDKHIYHELYMRSKGNQFKNKRVLMETIHKMKAERHREKTLKEQSEARKEKAKASRDRKTKK 176          
BLAST of EWM29998.1 vs. NCBI_GenBank
Match: gi|675168883|ref|XP_008893326.1| (60S ribosomal protein [Phytophthora parasitica INRA-310] >gi|566022206|gb|ETI45117.1| 60S ribosomal protein [Phytophthora parasitica P1569] >gi|567959520|gb|ETK85091.1| 60S ribosomal protein [Phytophthora parasitica] >gi|567988234|gb|ETL38515.1| 60S ribosomal protein [Phytophthora parasitica] >gi|568017439|gb|ETL91616.1| 60S ribosomal protein [Phytophthora parasitica] >gi|568047861|gb|ETM44929.1| 60S ribosomal protein [Phytophthora parasitica] >gi|568106913|gb|ETN21543.1| 60S ribosomal protein [Phytophthora parasitica INRA-310] >gi|570325782|gb|ETO73730.1| 60S ribosomal protein [Phytophthora parasitica P1976] >gi|570949677|gb|ETP14934.1| 60S ribosomal protein [Phytophthora parasitica CJ01A1] >gi|570983106|gb|ETP43001.1| 60S ribosomal protein [Phytophthora parasitica P10297])

HSP 1 Score: 246.128 bits (627), Expect = 6.935e-80
Identity = 130/172 (75.58%), Postives = 153/172 (88.95%), Query Frame = 0
Query:   31 MVNLRIQKRLAASVLKTGKRKVWLDPNETTEISMANSRQNVRKLIKDGFVLKKPQVIHSRSRYLTRLEAKRKGRHTGYGKRKGTANARLPMKIVWLRRTRVLRRLLRKYRDAKKVDKHLYHDLYQRAKGNQFKNKRVLMEAIHKMKAEKARLTQLAAQSEARRAKAKSKTER 202
            MV+L++QKRLAASVLK GKRK+WLDPNE+ EI++ANSRQN+RKL+KDGFV+KKPQVIHSR+R+  R EAKRKGRHTG GKR+GTANARLP K++W+RR RVLRRLLRKYR+AKK+DKH+YH+LY R+KGNQFKNKRVLME IHKMKAE+ R   L  QSEAR+ KAKS  ER
Sbjct:    1 MVSLKLQKRLAASVLKCGKRKIWLDPNESNEIALANSRQNIRKLVKDGFVIKKPQVIHSRARFTKRNEAKRKGRHTGIGKRRGTANARLPFKVIWMRRIRVLRRLLRKYREAKKIDKHIYHELYMRSKGNQFKNKRVLMETIHKMKAERHREKTLKEQSEARKEKAKSARER 172          
The following BLAST results are available for this feature:
BLAST of EWM29998.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585112608|gb|EWM29998.1|2.065e-160100.00ribosomal protein l19 [Nannochloropsis gaditana][more]
gi|669145958|ref|XP_008608541.1|2.622e-8268.3750S ribosomal protein L19e [Saprolegnia diclina VS... [more]
gi|813177413|ref|XP_012205176.1|6.992e-8274.5760S ribosomal protein [Saprolegnia parasitica CBS ... [more]
gi|1173946488|gb|OQR95014.1|1.537e-8174.5760S ribosomal protein L19-1 [Thraustotheca clavata... [more]
gi|1173935832|gb|OQR86887.1|1.955e-8174.5760S ribosomal protein L19-1 [Achlya hypogyna][more]
gi|676391715|ref|XP_009039135.1|3.092e-8076.88hypothetical protein AURANDRAFT_6947, partial [Aur... [more]
gi|695433089|ref|XP_009531099.1|3.759e-8075.58hypothetical protein PHYSODRAFT_355006 [Phytophtho... [more]
gi|325189036|emb|CCA23564.1|4.211e-8073.9960S ribosomal protein L191 putative [Albugo laibac... [more]
gi|953492844|emb|CEG44790.1|5.822e-8073.8660s ribosomal protein [Plasmopara halstedii][more]
gi|675168883|ref|XP_008893326.1|6.935e-8075.5860S ribosomal protein [Phytophthora parasitica INR... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna677rna677Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications