EWM29998.1, cds677 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM29998.1 vs. NCBI_GenBank
Match: gi|585112608|gb|EWM29998.1| (ribosomal protein l19 [Nannochloropsis gaditana]) HSP 1 Score: 451.055 bits (1159), Expect = 2.065e-160 Identity = 220/220 (100.00%), Postives = 220/220 (100.00%), Query Frame = 0 Query: 1 MTTRFSSLGSHHSRTPPLCLFSCPCSHRFTMVNLRIQKRLAASVLKTGKRKVWLDPNETTEISMANSRQNVRKLIKDGFVLKKPQVIHSRSRYLTRLEAKRKGRHTGYGKRKGTANARLPMKIVWLRRTRVLRRLLRKYRDAKKVDKHLYHDLYQRAKGNQFKNKRVLMEAIHKMKAEKARLTQLAAQSEARRAKAKSKTERKEKQKMEAAGLAEAEEGK 220 MTTRFSSLGSHHSRTPPLCLFSCPCSHRFTMVNLRIQKRLAASVLKTGKRKVWLDPNETTEISMANSRQNVRKLIKDGFVLKKPQVIHSRSRYLTRLEAKRKGRHTGYGKRKGTANARLPMKIVWLRRTRVLRRLLRKYRDAKKVDKHLYHDLYQRAKGNQFKNKRVLMEAIHKMKAEKARLTQLAAQSEARRAKAKSKTERKEKQKMEAAGLAEAEEGK Sbjct: 1 MTTRFSSLGSHHSRTPPLCLFSCPCSHRFTMVNLRIQKRLAASVLKTGKRKVWLDPNETTEISMANSRQNVRKLIKDGFVLKKPQVIHSRSRYLTRLEAKRKGRHTGYGKRKGTANARLPMKIVWLRRTRVLRRLLRKYRDAKKVDKHLYHDLYQRAKGNQFKNKRVLMEAIHKMKAEKARLTQLAAQSEARRAKAKSKTERKEKQKMEAAGLAEAEEGK 220
BLAST of EWM29998.1 vs. NCBI_GenBank
Match: gi|669145958|ref|XP_008608541.1| (50S ribosomal protein L19e [Saprolegnia diclina VS20] >gi|530739972|gb|EQC38214.1| 50S ribosomal protein L19e [Saprolegnia diclina VS20]) HSP 1 Score: 253.447 bits (646), Expect = 2.622e-82 Identity = 134/196 (68.37%), Postives = 162/196 (82.65%), Query Frame = 0 Query: 22 SCPCSHRFT-------MVNLRIQKRLAASVLKTGKRKVWLDPNETTEISMANSRQNVRKLIKDGFVLKKPQVIHSRSRYLTRLEAKRKGRHTGYGKRKGTANARLPMKIVWLRRTRVLRRLLRKYRDAKKVDKHLYHDLYQRAKGNQFKNKRVLMEAIHKMKAEKARLTQLAAQSEARRAKAKSKTERKEKQKMEA 210 P SH T MV+L++QKRLAASVLK GKRKVWLDPNE+TEI++ANSRQN+RKL+KDGFV++KPQVIHSR+R+ R EAKRKGRHTG GKR+GTANARLP K++W+RR RVLRRLLRKYRDAKK+D+H+YHDLY RAKGNQFKNKRVLME IHK+K+E R L QSEAR+ KA++ +RK +++ A Sbjct: 20 GAPSSHIITSFAGFNNMVSLKLQKRLAASVLKCGKRKVWLDPNESTEIALANSRQNIRKLVKDGFVIRKPQVIHSRARFTKRNEAKRKGRHTGIGKRRGTANARLPFKVIWMRRMRVLRRLLRKYRDAKKIDRHMYHDLYMRAKGNQFKNKRVLMEVIHKLKSEHIREKALKDQSEARKEKARNARDRKAGKEVAA 215
BLAST of EWM29998.1 vs. NCBI_GenBank
Match: gi|813177413|ref|XP_012205176.1| (60S ribosomal protein [Saprolegnia parasitica CBS 223.65] >gi|813207115|ref|XP_012210180.1| 60S ribosomal protein [Saprolegnia parasitica CBS 223.65] >gi|641524537|gb|KDO19108.1| 60S ribosomal protein [Saprolegnia parasitica CBS 223.65] >gi|641529891|gb|KDO24039.1| 60S ribosomal protein [Saprolegnia parasitica CBS 223.65]) HSP 1 Score: 250.751 bits (639), Expect = 6.992e-82 Identity = 129/173 (74.57%), Postives = 154/173 (89.02%), Query Frame = 0 Query: 31 MVNLRIQKRLAASVLKTGKRKVWLDPNETTEISMANSRQNVRKLIKDGFVLKKPQVIHSRSRYLTRLEAKRKGRHTGYGKRKGTANARLPMKIVWLRRTRVLRRLLRKYRDAKKVDKHLYHDLYQRAKGNQFKNKRVLMEAIHKMKAEKARLTQLAAQSEARRAKAKSKTERK 203 MV+L++QKRLAASVLK GKRKVWLDPNE+TEI++ANSRQN+RKL+KDGFV++KPQVIHSR+R+ R EAKRKGRHTG GKR+GTANARLP K++W+RR RVLRRLLRKYRDAKK+D+H+YHDLY RAKGNQFKNKRVLME IHK+K+E R L QSEAR+ KA++ +RK Sbjct: 1 MVSLKLQKRLAASVLKCGKRKVWLDPNESTEIALANSRQNIRKLVKDGFVIRKPQVIHSRARFTKRNEAKRKGRHTGIGKRRGTANARLPFKVIWMRRMRVLRRLLRKYRDAKKIDRHMYHDLYMRAKGNQFKNKRVLMEVIHKLKSEHIREKALKDQSEARKEKARNARDRK 173
BLAST of EWM29998.1 vs. NCBI_GenBank
Match: gi|1173946488|gb|OQR95014.1| (60S ribosomal protein L19-1 [Thraustotheca clavata]) HSP 1 Score: 249.98 bits (637), Expect = 1.537e-81 Identity = 129/173 (74.57%), Postives = 153/173 (88.44%), Query Frame = 0 Query: 31 MVNLRIQKRLAASVLKTGKRKVWLDPNETTEISMANSRQNVRKLIKDGFVLKKPQVIHSRSRYLTRLEAKRKGRHTGYGKRKGTANARLPMKIVWLRRTRVLRRLLRKYRDAKKVDKHLYHDLYQRAKGNQFKNKRVLMEAIHKMKAEKARLTQLAAQSEARRAKAKSKTERK 203 MV+L++QKRLAASVLK GKRKVWLDPNE+TEI++ANSRQN+RKL+KDGFV++KPQVIHSR+R+ R EAKRKGRHTG GKR+GTANARLP K++W+RR RVLRRLLRKYRDAKK+D+H+YHDLY RAKGNQFKNKRVLME IHK+K+E R L QSEAR+ KA+ +RK Sbjct: 1 MVSLKLQKRLAASVLKCGKRKVWLDPNESTEIALANSRQNIRKLVKDGFVIRKPQVIHSRARFTKRNEAKRKGRHTGIGKRRGTANARLPFKVIWMRRMRVLRRLLRKYRDAKKIDRHMYHDLYMRAKGNQFKNKRVLMEVIHKLKSEHIREKTLKDQSEARKEKARVARDRK 173
BLAST of EWM29998.1 vs. NCBI_GenBank
Match: gi|1173935832|gb|OQR86887.1| (60S ribosomal protein L19-1 [Achlya hypogyna]) HSP 1 Score: 249.98 bits (637), Expect = 1.955e-81 Identity = 129/173 (74.57%), Postives = 153/173 (88.44%), Query Frame = 0 Query: 31 MVNLRIQKRLAASVLKTGKRKVWLDPNETTEISMANSRQNVRKLIKDGFVLKKPQVIHSRSRYLTRLEAKRKGRHTGYGKRKGTANARLPMKIVWLRRTRVLRRLLRKYRDAKKVDKHLYHDLYQRAKGNQFKNKRVLMEAIHKMKAEKARLTQLAAQSEARRAKAKSKTERK 203 MV+L++QKRLAASVLK GKRKVWLDPNE+TEI++ANSRQN+RKL+KDGFV++KPQVIHSR+R+ R EAKRKGRHTG GKR+GTANARLP K++W+RR RVLRRLLRKYRDAKK+D+H+YHDLY RAKGNQFKNKRVLME IHK+K+E R L QSEAR+ KA+ +RK Sbjct: 1 MVSLKLQKRLAASVLKCGKRKVWLDPNESTEIALANSRQNIRKLVKDGFVIRKPQVIHSRARFTKRNEAKRKGRHTGIGKRRGTANARLPFKVIWMRRMRVLRRLLRKYRDAKKIDRHMYHDLYMRAKGNQFKNKRVLMEVIHKLKSEHIREKALKDQSEARKEKARVARDRK 173
BLAST of EWM29998.1 vs. NCBI_GenBank
Match: gi|676391715|ref|XP_009039135.1| (hypothetical protein AURANDRAFT_6947, partial [Aureococcus anophagefferens] >gi|323450303|gb|EGB06185.1| hypothetical protein AURANDRAFT_6947, partial [Aureococcus anophagefferens]) HSP 1 Score: 246.514 bits (628), Expect = 3.092e-80 Identity = 133/173 (76.88%), Postives = 153/173 (88.44%), Query Frame = 0 Query: 31 MVNLRIQKRLAASVLKTGKRKVWLDPNETTEISMANSRQNVRKLIKDGFVLKKPQVIHSRSRYLTRLEAKRKGRHTGYGKRKGTANARLPMKIVWLRRTRVLRRLLRKYRDAKKVDKHLYHDLYQRAKGNQFKNKRVLMEAIHKMKAEKARLTQLAAQSEARRAKAKSKTERK 203 M +L +QKRLAASVLK GK +VW+DPNET EISMANSRQN+RKLIKDGFV++KP V+HSRSR L+AKRKGRHTG GKRKGTANAR+PMK++W+RR RVLRRLLRKYR+AKK+D HLYHDLY RAKGNQFKNKRVLME+IHK+K EKAR LA Q+EAR++KAK KTERK Sbjct: 1 MSSLSLQKRLAASVLKAGKNRVWMDPNETNEISMANSRQNIRKLIKDGFVIRKPVVVHSRSRCQRHLDAKRKGRHTGLGKRKGTANARMPMKVLWMRRQRVLRRLLRKYREAKKIDHHLYHDLYMRAKGNQFKNKRVLMESIHKLKGEKAREKALADQAEARKSKAKLKTERK 173
BLAST of EWM29998.1 vs. NCBI_GenBank
Match: gi|695433089|ref|XP_009531099.1| (hypothetical protein PHYSODRAFT_355006 [Phytophthora sojae] >gi|348673851|gb|EGZ13670.1| hypothetical protein PHYSODRAFT_355006 [Phytophthora sojae]) HSP 1 Score: 246.514 bits (628), Expect = 3.759e-80 Identity = 130/172 (75.58%), Postives = 153/172 (88.95%), Query Frame = 0 Query: 31 MVNLRIQKRLAASVLKTGKRKVWLDPNETTEISMANSRQNVRKLIKDGFVLKKPQVIHSRSRYLTRLEAKRKGRHTGYGKRKGTANARLPMKIVWLRRTRVLRRLLRKYRDAKKVDKHLYHDLYQRAKGNQFKNKRVLMEAIHKMKAEKARLTQLAAQSEARRAKAKSKTER 202 MV+L++QKRLAASVLK GKRK+WLDPNE+ EI++ANSRQN+RKL+KDGFV+KKPQVIHSR+R+ R EAKRKGRHTG GKR+GTANARLP K++W+RR RVLRRLLRKYR+AKK+DKH+YH+LY R+KGNQFKNKRVLME IHKMKAE+ R L QSEAR+ KAKS ER Sbjct: 1 MVSLKLQKRLAASVLKCGKRKIWLDPNESNEIALANSRQNIRKLVKDGFVIKKPQVIHSRARFTKRNEAKRKGRHTGIGKRRGTANARLPFKVIWMRRIRVLRRLLRKYREAKKIDKHIYHELYMRSKGNQFKNKRVLMETIHKMKAERQREKTLKEQSEARKEKAKSARER 172
BLAST of EWM29998.1 vs. NCBI_GenBank
Match: gi|325189036|emb|CCA23564.1| (60S ribosomal protein L191 putative [Albugo laibachii Nc14]) HSP 1 Score: 246.899 bits (629), Expect = 4.211e-80 Identity = 128/173 (73.99%), Postives = 153/173 (88.44%), Query Frame = 0 Query: 31 MVNLRIQKRLAASVLKTGKRKVWLDPNETTEISMANSRQNVRKLIKDGFVLKKPQVIHSRSRYLTRLEAKRKGRHTGYGKRKGTANARLPMKIVWLRRTRVLRRLLRKYRDAKKVDKHLYHDLYQRAKGNQFKNKRVLMEAIHKMKAEKARLTQLAAQSEARRAKAKSKTERK 203 MV+LR+QKRLAASVLK GKRK+WLDPNE+ EI++ANSR+N+RKL+KDGFV+KKPQVIHSR+R+ R EAKRKGRHTG GKR+GTANARLP K++W+RR RVLRRLLRKYR+AKK+D+ LYHDLY R+KGNQFKNKRVLME IHKMKAE+ R L QSEAR+ +AK+ ER+ Sbjct: 1 MVSLRLQKRLAASVLKCGKRKIWLDPNESNEIALANSRENIRKLVKDGFVIKKPQVIHSRARFQKRNEAKRKGRHTGIGKRRGTANARLPFKVIWMRRMRVLRRLLRKYREAKKIDRFLYHDLYMRSKGNQFKNKRVLMETIHKMKAERHREKTLREQSEARKERAKNARERR 173
BLAST of EWM29998.1 vs. NCBI_GenBank
Match: gi|953492844|emb|CEG44790.1| (60s ribosomal protein [Plasmopara halstedii]) HSP 1 Score: 246.128 bits (627), Expect = 5.822e-80 Identity = 130/176 (73.86%), Postives = 156/176 (88.64%), Query Frame = 0 Query: 31 MVNLRIQKRLAASVLKTGKRKVWLDPNETTEISMANSRQNVRKLIKDGFVLKKPQVIHSRSRYLTRLEAKRKGRHTGYGKRKGTANARLPMKIVWLRRTRVLRRLLRKYRDAKKVDKHLYHDLYQRAKGNQFKNKRVLMEAIHKMKAEKARLTQLAAQSEARRAKAKSKTERKEKQ 206 MV+L++QKRLAASVLK GKRK+WLDPNE+ EI++ANSRQN+RKL+KDGFV+KKPQVIHSR+R+ R EAKRKGRHTG GKR+GTANARLP K++W+RR RVLRRLLRKYR+AKK+DKH+YH+LY R+KGNQFKNKRVLME IHKMKAE+ R L QSEAR+ KAK+ +RK K+ Sbjct: 1 MVSLKLQKRLAASVLKCGKRKIWLDPNESNEIALANSRQNIRKLVKDGFVIKKPQVIHSRARFAKRNEAKRKGRHTGIGKRRGTANARLPFKVIWMRRIRVLRRLLRKYREAKKIDKHIYHELYMRSKGNQFKNKRVLMETIHKMKAERHREKTLKEQSEARKEKAKASRDRKTKK 176
BLAST of EWM29998.1 vs. NCBI_GenBank
Match: gi|675168883|ref|XP_008893326.1| (60S ribosomal protein [Phytophthora parasitica INRA-310] >gi|566022206|gb|ETI45117.1| 60S ribosomal protein [Phytophthora parasitica P1569] >gi|567959520|gb|ETK85091.1| 60S ribosomal protein [Phytophthora parasitica] >gi|567988234|gb|ETL38515.1| 60S ribosomal protein [Phytophthora parasitica] >gi|568017439|gb|ETL91616.1| 60S ribosomal protein [Phytophthora parasitica] >gi|568047861|gb|ETM44929.1| 60S ribosomal protein [Phytophthora parasitica] >gi|568106913|gb|ETN21543.1| 60S ribosomal protein [Phytophthora parasitica INRA-310] >gi|570325782|gb|ETO73730.1| 60S ribosomal protein [Phytophthora parasitica P1976] >gi|570949677|gb|ETP14934.1| 60S ribosomal protein [Phytophthora parasitica CJ01A1] >gi|570983106|gb|ETP43001.1| 60S ribosomal protein [Phytophthora parasitica P10297]) HSP 1 Score: 246.128 bits (627), Expect = 6.935e-80 Identity = 130/172 (75.58%), Postives = 153/172 (88.95%), Query Frame = 0 Query: 31 MVNLRIQKRLAASVLKTGKRKVWLDPNETTEISMANSRQNVRKLIKDGFVLKKPQVIHSRSRYLTRLEAKRKGRHTGYGKRKGTANARLPMKIVWLRRTRVLRRLLRKYRDAKKVDKHLYHDLYQRAKGNQFKNKRVLMEAIHKMKAEKARLTQLAAQSEARRAKAKSKTER 202 MV+L++QKRLAASVLK GKRK+WLDPNE+ EI++ANSRQN+RKL+KDGFV+KKPQVIHSR+R+ R EAKRKGRHTG GKR+GTANARLP K++W+RR RVLRRLLRKYR+AKK+DKH+YH+LY R+KGNQFKNKRVLME IHKMKAE+ R L QSEAR+ KAKS ER Sbjct: 1 MVSLKLQKRLAASVLKCGKRKIWLDPNESNEIALANSRQNIRKLVKDGFVIKKPQVIHSRARFTKRNEAKRKGRHTGIGKRRGTANARLPFKVIWMRRIRVLRRLLRKYREAKKIDKHIYHELYMRSKGNQFKNKRVLMETIHKMKAERHREKTLKEQSEARKEKAKSARER 172 The following BLAST results are available for this feature:
BLAST of EWM29998.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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