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Properties
| Property Name | Value |
|---|
| Product | transcription initiation factor tfiid subunit |
| Orig transcript id | gnl|cribi|Naga_100082g12.9371.mrna |
| Orig protein id | gnl|cribi|Naga_100082g12.9371 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002469.1 | supercontig | CM002469.1:443283..445266 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna6763 ID=rna6763|Name=rna6763|organism=Nannochloropsis gaditana|type=mRNA|length=708bp
CAAAAGCTAGTGTCCTTGTCGGGCGGCTCCCCGCTAAACGGGGTTTAGAG
GTAGCGGCAAAGCGATACGAGCCTCCTCTCGAAGGCGATGAGGTCGTCGA
AGCCGGGGCACGGGTGATGGACAAGTGCACGCCTGCGCACGCACGGCACT
CTATACCGATGGTGCTGATCATATGTACGCCACCGCGCATACAGAGCCTA
ATTTCGGGGATCAGAGCCACGCTTTTGGAGTCATCATGTTTCCAGGTCGT
CGTTCGTTTCTGTTGGTCCTGCTCATGGTAGGACTGATTGGTACGGCCAC
GCTGGCCTTCCTGCTGCGGACGGGACCTCCTTCACGATCATGCAGTGCAC
TCGATGCGGAGAGAAGAAGTGAAATGGCGACACGTCGTGTCGGAGTGCAG
CAAATTGCTTTCAGTTTGTTGACACCATTCGTCTTGACGGCAGGTGCAGA
TGTCGCTGCAGCTGTGGTGAGACCTCTTTCTTGCGTTTCGTATTATTCAA
GAATTTCATCTTAATTATTCATTTTTTCATTCCTTTACTCTACATTATCG
GTGAACTTTCAATGTGGTATTATTTTCTTCCCTTCAAACGCCCTTGATTT
ATCATATTCTACACATTTGAATGTGTGCATTTCAAGACAGAAAACCTCTT
TCGCCGTCCGCCCCTCATTGAACACATTTTCTTTTCACATTTAATACTGC
ACTACCGT back to topprotein sequence of rna6763 >rna6763-protein ID=rna6763-protein|Name=rna6763|organism=Nannochloropsis gaditana|type=polypeptide|length=470bp
MSGHYAQQAFVLRLPEHLEEIIRARLRAGNMDGVQLTARPDGSEGLPKYA
AKRGGLLELRLGGGRRASEEDLYSDGKDDESERARVFPARLVNLPCVVEV
HKTVDYVTLFKSADVGQMVVVYKDEAAMLEDMLREEEERGKMREKGGKDD
EGKAELSLRAQLDYYHSGLTPPTTNIVRRRFAETRMHGPYPAATVAKVQG
ELAAHVAALEEKREVSEVVEDVVDFEDYMADMHGQPVTIAEDSALWLEHP
ELLIHRPVVLAPDDPALGPAASALPAAPKPFPADAAYDPAFIQEGSTAPT
SKGSSRPGKGGGGRGSPVRGRGGRSTRSARSGRRGRTQRQGGADASPAAR
AAASDSSLPPVAISGCPEGASAPLIMLEPPAGPPSYGEMQPPPPPPSHRR
HREPKESRITGGQRVGGPVITGNLPAPDVPPDPEFDNAFLGEDGEDDFLD
FLEGGVEEEGGLMDEGFLEL back to topmRNA from alignment at CM002469.1:443283..445266+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna6763 ID=rna6763|Name=rna6763|organism=Nannochloropsis gaditana|type=mRNA|length=1984bp|location=Sequence derived from alignment at CM002469.1:443283..445266+ (Nannochloropsis gaditana)
TCTAAACCCCGTTTAGCGGGGAGCCGCCCGACAAGGACACTAGCTTTTGG
CACTACTCACGCTCACAATATTTTCAACCCTCCGAAACCCCACAGAAGAC
ACGAAGAAGGCCGCGCTTGCAAGGGGAATGTTTACACGCACAAAGGACTG
ATCCAAATCAGTGAACAGAAAATAATCCGGGCGCCATGAGCGGTCATTAC
GCACAGCAAGCTTTTGTGCTACGCTTGCCGGAGCATCTCGAGGAGATTAT
TCGTGCACGGCTGAGGGCTGGCAATATGGATGGGGTTCAGCTCACGGCAA
GACCTGATGGCTCGGAGGGCCTGCGTAAGTGTGATGACGGGGGGGGTCCG
ACCGCGATTGTGAGGTATCGCGCGCCTGGGAGCTGTAATGTACTTTCTTG
ACGTAAGAAGGCTGGCTCGGCTCGGCTACCTCGACTTCCCCCTTTTTGAC
AGCAGTGAAAATTTCCCTGACGTGCCTTGTACGATTCTGTCGTTCAAATA
GCGGCGTCACCAGTGTTCGAGCTCTCACTGATTCTCTTTACGATGCACAT
GCAGCCAAATATGCTGCCAAGCGCGGTGGGCTTCTGGAGCTGCGGCTTGG
AGGGGGTAGGAGAGCATCAGAGGAGGACTTATATAGTGACGGCAAGGATG
ATGAGAGTGAGCGTGCTAGAGTCTTTCCTGCTCGGCTCGTGAACTTGCCG
TGCGTTGTGGAGGTGCACAAAACGGTTGACTACGTGACGCTGTTCAAGAG
CGCAGACGTGGGGCAGATGGTGGTGGTATACAAAGATGAGGCAGCGATGC
TTGAGGACATGctgcgagaggaagaagagcgagGAAAAATGCGTGAGAAG
GGTGGCAAAGACGACGAGGGCAAGGCAGAGTTGAGCTTACGTGCGCAGCT
CGACTACTACCACTCGGGCCTGACTCCACCCACGACAAATATCGTCCGGC
GGCGCTTTGCAGAGACGCGCATGCACGGGCCCTATCCGGCCGCCACGGTT
GCCAAGGTGCAAGGGGAGCTGGCAGCCCAcgtggcggcgctggaggagaa
gcgggaggtgtcggaggtggtggaggacgtggtcgacTTCGAGGACTACA
TGGCCGACATGCACGGCCAGCCAGTGACCATCGCCGAGGACTCTGCGCTC
TGGCTCGAGCATCCAGAGctcctcatccaccgccCTGTCGTCCTCGCACC
CGACGACCCGGCGCTGGGCCCTGCAGCGTCCGCGTTGCCTGCTGCCCCCA
AACCCTTCCCCGCTGACGCGGCCTACGATCCGGCCTTCATCCAGGAGGGC
TCGACGGCGCCAACCTCGAAAGGCTCTTCGCGacctgggaaaggaggcgg
cggacgcGGATCGCCCGtgcgtggacgagggggtCGAAGCACTAGGAGTG
CTCGGAGCGGGCGCCGGGGCCGGACGCAAcggcaggggggggcagacgcC
TCACCTGCTGCTCGTGCTGCAGCATCTGACAGCTCTCTTCCACCAGTCGC
GATCTCAGGCTGCCCCGAGGGCGCGAGTGCTCCTCTGATAATGCTGGAAC
CCCCGGCCGGTCCGCCGTCTTATGGGGAGATGcagcctccacccccgcca
ccaTCGCACCGCAGGCACCGAGAGCCGAAGGAGAGTCGCATCACTGGTGG
GCAGCGGGTTGGAGGACCGGTCATCACAGGTAATTTGCCGGCCCCGGACG
TGCCTCCAGACCCGGAGTTCGACAACGCCTTCttaggggaggatggagag
gatgactTTCTGGATTTTTtggaggggggcgtggaggaagagggcggccT
GATGGACGAAGGCTTTCTGGAACTCTGAAAGGCGGAAGTCAAGCGGGAAA
AATGGCATGTACATGTGATGGGTGTTCAGTGGAATATGTAGAAAAGAAAC
AGAGCATGAAAATTAGACGGTGGCGGCGAAATCGTAGAGCCGGTAATTGA
TTGAAGACAACAAGGCGTGTAGAGCGGTTGAGCC back to topCoding sequence (CDS) from alignment at CM002469.1:443283..445266+ >rna6763 ID=rna6763|Name=rna6763|organism=Nannochloropsis gaditana|type=CDS|length=2826bp|location=Sequence derived from alignment at CM002469.1:443283..445266+ (Nannochloropsis gaditana)
ATGAGCGGTCATTACGCACAGCAAGCTTTTGTGCTACGCTTGCCGGAGCA
TCTCGAGGAGATTATTCGTGCACGGCTGAGGGCTGGCAATATGGATGGGG
TTCAGCTCACGGCAAGACCTGATGGCTCGGAGGGCCTGCCCAAATATGCT
GCCAAGCGCGGTGGGCTTCTGGAGCTGCGGCTTGGAGGGGGTAGGAGAGC
ATCAGAGGAGGACTTATATAGTGACGGCAAGGATGATGAGAGTGAGCGTG
CTAGAGTCTTTCCTGCTCGGCTCGTGAACTTGCCGTGCGTTGTGGAGGTG
CACAAAACGGTTGACTACGTGACGCTGTTCAAGAGCGCAGACGTGGGGCA
GATGGTGGTGGTATACAAAGATGAGGCAGCGATGCTTGAGGACATGctgc
gagaggaagaagagcgagGAAAAATGCGTGAGAAGGGTGGCAAAGACGAC
GAGGGCAAGGCAGAGTTGAGCTTACGTGCGCAGCTCGACTACTACCACTC
GGGCCTGACTCCACCCACGACAAATATCGTCCGGCGGCGCTTTGCAGAGA
CGCGCATGCACGGGCCCTATCCGGCCGCCACGGTTGCCAAGGTGCAAGGG
GAGCTGGCAGCCCAcgtggcggcgctggaggagaagcgggaggtgtcgga
ggtggtggaggacgtggtcgacTTCGAGGACTACATGGCCGACATGCACG
GCCAGCCAGTGACCATCGCCGAGGACTCTGCGCTCTGGCTCGAGCATCCA
GAGctcctcatccaccgccCTGTCGTCCTCGCACCCGACGACCCGGCGCT
GGGCCCTGCAGCGTCCGCGTTGCCTGCTGCCCCCAAACCCTTCCCCGCTG
ACGCGGCCTACGATCCGGCCTTCATCCAGGAGGGCTCGACGGCGCCAACC
TCGAAAGGCTCTTCGCGacctgggaaaggaggcggcggacgcGGATCGCC
CGtgcgtggacgagggggtCGAAGCACTAGGAGTGCTCGGAGCGGGCGCC
GGGGCCGGACGCAAcggcaggggggggcagacgcCTCACCTGCTGCTCGT
GCTGCAGCATCTGACAGCTCTCTTCCACCAGTCGCGATCTCAGGCTGCCC
CGAGGGCGCGAGTGCTCCTCTGATAATGCTGGAACCCCCGGCCGGTCCGC
CGTCTTATGGGGAGATGcagcctccacccccgccaccaTCGCACCGCAGG
CACCGAGAGCCGAAGGAGAGTCGCATCACTGGTGGGCAGCGGGTTGGAGG
ACCGGTCATCACAGGTAATTTGCCGGCCCCGGACGTGCCTCCAGACCCGG
AGTTCGACAACGCCTTCttaggggaggatggagaggatgactTTCTGGAT
TTTTtggaggggggcgtggaggaagagggcggccTGATGGACGAAGGCTT
TCTGGAACTCTGAATGAGCGGTCATTACGCACAGCAAGCTTTTGTGCTAC
GCTTGCCGGAGCATCTCGAGGAGATTATTCGTGCACGGCTGAGGGCTGGC
AATATGGATGGGGTTCAGCTCACGGCAAGACCTGATGGCTCGGAGGGCCT
GCCCAAATATGCTGCCAAGCGCGGTGGGCTTCTGGAGCTGCGGCTTGGAG
GGGGTAGGAGAGCATCAGAGGAGGACTTATATAGTGACGGCAAGGATGAT
GAGAGTGAGCGTGCTAGAGTCTTTCCTGCTCGGCTCGTGAACTTGCCGTG
CGTTGTGGAGGTGCACAAAACGGTTGACTACGTGACGCTGTTCAAGAGCG
CAGACGTGGGGCAGATGGTGGTGGTATACAAAGATGAGGCAGCGATGCTT
GAGGACATGctgcgagaggaagaagagcgagGAAAAATGCGTGAGAAGGG
TGGCAAAGACGACGAGGGCAAGGCAGAGTTGAGCTTACGTGCGCAGCTCG
ACTACTACCACTCGGGCCTGACTCCACCCACGACAAATATCGTCCGGCGG
CGCTTTGCAGAGACGCGCATGCACGGGCCCTATCCGGCCGCCACGGTTGC
CAAGGTGCAAGGGGAGCTGGCAGCCCAcgtggcggcgctggaggagaagc
gggaggtgtcggaggtggtggaggacgtggtcgacTTCGAGGACTACATG
GCCGACATGCACGGCCAGCCAGTGACCATCGCCGAGGACTCTGCGCTCTG
GCTCGAGCATCCAGAGctcctcatccaccgccCTGTCGTCCTCGCACCCG
ACGACCCGGCGCTGGGCCCTGCAGCGTCCGCGTTGCCTGCTGCCCCCAAA
CCCTTCCCCGCTGACGCGGCCTACGATCCGGCCTTCATCCAGGAGGGCTC
GACGGCGCCAACCTCGAAAGGCTCTTCGCGacctgggaaaggaggcggcg
gacgcGGATCGCCCGtgcgtggacgagggggtCGAAGCACTAGGAGTGCT
CGGAGCGGGCGCCGGGGCCGGACGCAAcggcaggggggggcagacgcCTC
ACCTGCTGCTCGTGCTGCAGCATCTGACAGCTCTCTTCCACCAGTCGCGA
TCTCAGGCTGCCCCGAGGGCGCGAGTGCTCCTCTGATAATGCTGGAACCC
CCGGCCGGTCCGCCGTCTTATGGGGAGATGcagcctccacccccgccacc
aTCGCACCGCAGGCACCGAGAGCCGAAGGAGAGTCGCATCACTGGTGGGC
AGCGGGTTGGAGGACCGGTCATCACAGGTAATTTGCCGGCCCCGGACGTG
CCTCCAGACCCGGAGTTCGACAACGCCTTCttaggggaggatggagagga
tgactTTCTGGATTTTTtggaggggggcgtggaggaagagggcggccTGA
TGGACGAAGGCTTTCTGGAACTCTGA back to top
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