EWM23939.1, cds6747 (CDS) Nannochloropsis gaditana

Overview
NameEWM23939.1
Unique Namecds6747
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002469.1:443468..443606 +
Alignment locationCM002469.1:443837..445110 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM23939.1
Producttranscription initiation factor tfiid subunit
Orig transcript idgnl|cribi|Naga_100082g12.9371.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002469.1supercontigCM002469.1:443468..443606 +
CM002469.1supercontigCM002469.1:443837..445110 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0005654nucleoplasm
GO:0005669transcription factor TFIID complex
Vocabulary: Biological Process
TermDefinition
GO:0006139nucleobase-containing compound metabolic process
GO:0006367transcription initiation from RNA polymerase II promoter
Vocabulary: Molecular Function
TermDefinition
GO:0008135translation factor activity, RNA binding
Vocabulary: INTERPRO
TermDefinition
IPR006751TAFII55_prot_cons_reg
Homology
BLAST of EWM23939.1 vs. NCBI_GenBank
Match: gi|585105224|gb|EWM23939.1| (transcription initiation factor tfiid subunit [Nannochloropsis gaditana])

HSP 1 Score: 934.48 bits (2414), Expect = 0.000e+0
Identity = 470/470 (100.00%), Postives = 470/470 (100.00%), Query Frame = 0
Query:    1 MSGHYAQQAFVLRLPEHLEEIIRARLRAGNMDGVQLTARPDGSEGLPKYAAKRGGLLELRLGGGRRASEEDLYSDGKDDESERARVFPARLVNLPCVVEVHKTVDYVTLFKSADVGQMVVVYKDEAAMLEDMLREEEERGKMREKGGKDDEGKAELSLRAQLDYYHSGLTPPTTNIVRRRFAETRMHGPYPAATVAKVQGELAAHVAALEEKREVSEVVEDVVDFEDYMADMHGQPVTIAEDSALWLEHPELLIHRPVVLAPDDPALGPAASALPAAPKPFPADAAYDPAFIQEGSTAPTSKGSSRPGKGGGGRGSPVRGRGGRSTRSARSGRRGRTQRQGGADASPAARAAASDSSLPPVAISGCPEGASAPLIMLEPPAGPPSYGEMQPPPPPPSHRRHREPKESRITGGQRVGGPVITGNLPAPDVPPDPEFDNAFLGEDGEDDFLDFLEGGVEEEGGLMDEGFLEL 470
            MSGHYAQQAFVLRLPEHLEEIIRARLRAGNMDGVQLTARPDGSEGLPKYAAKRGGLLELRLGGGRRASEEDLYSDGKDDESERARVFPARLVNLPCVVEVHKTVDYVTLFKSADVGQMVVVYKDEAAMLEDMLREEEERGKMREKGGKDDEGKAELSLRAQLDYYHSGLTPPTTNIVRRRFAETRMHGPYPAATVAKVQGELAAHVAALEEKREVSEVVEDVVDFEDYMADMHGQPVTIAEDSALWLEHPELLIHRPVVLAPDDPALGPAASALPAAPKPFPADAAYDPAFIQEGSTAPTSKGSSRPGKGGGGRGSPVRGRGGRSTRSARSGRRGRTQRQGGADASPAARAAASDSSLPPVAISGCPEGASAPLIMLEPPAGPPSYGEMQPPPPPPSHRRHREPKESRITGGQRVGGPVITGNLPAPDVPPDPEFDNAFLGEDGEDDFLDFLEGGVEEEGGLMDEGFLEL
Sbjct:    1 MSGHYAQQAFVLRLPEHLEEIIRARLRAGNMDGVQLTARPDGSEGLPKYAAKRGGLLELRLGGGRRASEEDLYSDGKDDESERARVFPARLVNLPCVVEVHKTVDYVTLFKSADVGQMVVVYKDEAAMLEDMLREEEERGKMREKGGKDDEGKAELSLRAQLDYYHSGLTPPTTNIVRRRFAETRMHGPYPAATVAKVQGELAAHVAALEEKREVSEVVEDVVDFEDYMADMHGQPVTIAEDSALWLEHPELLIHRPVVLAPDDPALGPAASALPAAPKPFPADAAYDPAFIQEGSTAPTSKGSSRPGKGGGGRGSPVRGRGGRSTRSARSGRRGRTQRQGGADASPAARAAASDSSLPPVAISGCPEGASAPLIMLEPPAGPPSYGEMQPPPPPPSHRRHREPKESRITGGQRVGGPVITGNLPAPDVPPDPEFDNAFLGEDGEDDFLDFLEGGVEEEGGLMDEGFLEL 470          
BLAST of EWM23939.1 vs. NCBI_GenBank
Match: gi|298712792|emb|CBJ48757.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 95.5153 bits (236), Expect = 5.080e-18
Identity = 76/204 (37.25%), Postives = 97/204 (47.55%), Query Frame = 0
Query:    1 MSGHYAQQAFVLRLPEHLEEIIRARLRAGN-MDGVQLTARPDGSEGLPKYAAKRGGLLELRLGGGRRASEEDLYSDGKDDESERARVFPARLVNLPCVVEVHKTVDYVTLFKSADVGQMVVVYKDEAAMLEDMLREEEERGKMREKGGKDDEGKAELSLRAQLDYYHSGLTPPTTNIVRRRFAETR-MHGPYPAATVAKVQGEL 202
            MS  Y Q   VLRLP+ L+E +R R+ A   M+GV  T    GS                     RR +      DGK         +PARLV++PCV+E  KT+D  T FKS DVGQM++VYKDE A                    K D+G A      +L  Y  GLTPPT NIVRRRF + R   G +  A V +V+ ++
Sbjct:    1 MSTTYRQ--LVLRLPDGLKEAMRERVAADTGMEGVDFTPEKKGS---------------------RRFT---FTMDGKK--------YPARLVDMPCVLETQKTLDKRTFFKSGDVGQMLIVYKDENAY-------------------KKDDGNASGVGPQRL--YPDGLTPPTKNIVRRRFVKARPDRGKFDRAEVIRVESQV 149          
BLAST of EWM23939.1 vs. NCBI_GenBank
Match: gi|224007397|ref|XP_002292658.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220971520|gb|EED89854.1| predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 94.7449 bits (234), Expect = 1.253e-17
Identity = 60/129 (46.51%), Postives = 73/129 (56.59%), Query Frame = 0
Query:   86 VFPARLVNLPCVVEVHKTVDYVTLFKSADVGQMVVVYKDEAAMLEDMLREEEERGKMREKGGKDDEGKAELSLRAQLDYYHSGLTPPTTNIVRRRFA---ETRMHGPYP--AATVAKVQGELAAHVAAL 209
             +PARLVNLPC VEVHKT D+ T  KSADVGQM++VY+DE AM      EE E     EKG K         +   L YYHSG+TPP   +VRRRF    E R   P P   + V +V+ E+   +  L
Sbjct:   91 TYPARLVNLPCPVEVHKTHDHATYHKSADVGQMLIVYEDEYAM------EEAE----NEKGYK---------IEGFLSYYHSGITPPMKRVVRRRFLSRFEERDVKPVPPYRSEVTEVEKEIQNLITKL 200          
BLAST of EWM23939.1 vs. NCBI_GenBank
Match: gi|1214710918|gb|OWZ21966.1| (hypothetical protein PHMEG_0003388 [Phytophthora megakarya])

HSP 1 Score: 91.6633 bits (226), Expect = 1.451e-16
Identity = 54/168 (32.14%), Postives = 87/168 (51.79%), Query Frame = 0
Query:   87 FPARLVNLPCVVEVHKTVDYVTLFKSADVGQMVVVYKDEAAMLEDMLREEEERGKMREKGGKDDEGKAELSLRAQLDYYHSGLTPPTTNIVRRRFAETRMHGPYPAATVAKVQGELAAHVAALEEKREVSEVVEDVVDFEDYMAD-MHGQPVTIAEDSALWLEHPELL 253
            +PAR+  LP ++E HKT D    +KS ++GQ+ VV             ++EE  K+ E                  D   +GLTPP TN+++R++ +T+   P+P   VA+V+ +L   + A      + +V E++VDF D+MAD  H   +T+ ++  L  EHPE L
Sbjct:   48 YPARIAQLPTILETHKTYDDNFFYKSGEIGQIFVV------------TDKEEEKKLLESQ----------------DEVPNGLTPPNTNVIKRKYEKTKKTTPFPKPDVARVEEDLVKIINA---NGAIEDVHEELVDFYDWMADEEHPNGITVTDEMELIREHPEYL 184          
BLAST of EWM23939.1 vs. NCBI_GenBank
Match: gi|1210525137|dbj|GAX16071.1| (hypothetical protein FisN_20Hh253 [Fistulifera solaris])

HSP 1 Score: 90.8929 bits (224), Expect = 1.906e-16
Identity = 72/196 (36.73%), Postives = 94/196 (47.96%), Query Frame = 0
Query:   86 VFPARLVNLPCVVEVHKTVDYVTLFKSADVGQMVVVYKDEAAMLEDMLREEEERGKMREKGGKDDEGKAELSLRAQLDYYHSGLTPPTTNIVRRRFAETRMHG--PYPAATVAKVQGELAAHVAALEE----KREVSEVVEDVV--------------DFEDYMADMHGQPVTIA--EDSALWLEHPELLIHRPVV 259
             +PA+LVNLPC VE+HKT D+    KS D+ QM++VY+D+ A     L E EE         K  EG          +YYHSGLTPPT  IV RRFA  R H   P P +  A V+ EL   +  L      KR  +  V  +               D+E +M+D   QP+ I    DS L   HPE+ +   V+
Sbjct:   76 TYPAKLVNLPCPVELHKTHDHAIYIKSVDIAQMLIVYEDDMA-----LEEAEE---------KPPEG---------FNYYHSGLTPPTRRIVERRFA-AREHKAMPPPRSASAYVETELLELMEKLARDDKGKRNKATKVPTLTSATKVLEEVEEEVVDYEPWMSDFGKQPLGIEFDTDSQLCSLHPEIWLKPSVI 247          
BLAST of EWM23939.1 vs. NCBI_GenBank
Match: gi|695446433|ref|XP_009534480.1| (hypothetical protein PHYSODRAFT_564209 [Phytophthora sojae] >gi|348669797|gb|EGZ09619.1| hypothetical protein PHYSODRAFT_564209 [Phytophthora sojae])

HSP 1 Score: 90.8929 bits (224), Expect = 2.291e-16
Identity = 64/247 (25.91%), Postives = 112/247 (45.34%), Query Frame = 0
Query:    8 QAFVLRLPEHLEEIIRARLRAGNMDGVQLTARPDGSEGLPKYAAKRGGLLELRLGGGRRASEEDLYSDGKDDESERARVFPARLVNLPCVVEVHKTVDYVTLFKSADVGQMVVVYKDEAAMLEDMLREEEERGKMREKGGKDDEGKAELSLRAQLDYYHSGLTPPTTNIVRRRFAETRMHGPYPAATVAKVQGELAAHVAALEEKREVSEVVEDVVDFEDYMA-DMHGQPVTIAEDSALWLEHPELL 253
            + ++L+LP+ L + +RA +  G    V + +  D                              L+ +GK+        +PA++  LPC++E HKT D    +KS ++GQ+ VV                          KD+E K    L    +   +G+TPP TN+++R++ +T+   P+P   VA+V+ +L   +A       + +V E++VDF ++MA D H   +T+ ++  L  EHPE L
Sbjct:    2 EQYLLQLPKRLAQEVRAGIANGESANVDIVSGADNKHFT-------------------------LHVNGKE--------YPAKIAQLPCILETHKTYDDNFFYKSGEIGQIFVV------------------------TDKDEERK----LLETQEEVTNGITPPNTNVIKRKYEKTKKTTPFPKGDVARVEEDLVKIIAG----GAIEDVHEELVDFYEWMADDEHPNGITVTDEMELIREHPEYL 183          
BLAST of EWM23939.1 vs. NCBI_GenBank
Match: gi|1210512077|dbj|GAX28932.1| (hypothetical protein FisN_20Lh253 [Fistulifera solaris])

HSP 1 Score: 90.5077 bits (223), Expect = 2.338e-16
Identity = 71/196 (36.22%), Postives = 93/196 (47.45%), Query Frame = 0
Query:   86 VFPARLVNLPCVVEVHKTVDYVTLFKSADVGQMVVVYKDEAAMLEDMLREEEERGKMREKGGKDDEGKAELSLRAQLDYYHSGLTPPTTNIVRRRFAETRMHG--PYPAATVAKVQGELAAHVAALEE----KREVSEVVEDVV--------------DFEDYMADMHGQP--VTIAEDSALWLEHPELLIHRPVV 259
             +PA+LVNLPC VE+HKT D+    KS D+ QM++VY+D+ A     L E EE         K  EG          +YYHSGLTPPT  IV RRFA  R H   P P +  A V+ EL   +  L      KR  +  V  +               D+E +M+D   QP  +    DS L   HPE+ +   V+
Sbjct:   76 TYPAKLVNLPCPVELHKTHDHAIYIKSVDIAQMLIVYEDDMA-----LEEAEE---------KPPEG---------FNYYHSGLTPPTRRIVERRFA-AREHKAMPPPRSASAYVETELLELMEKLTRDDKGKRNKATKVPTLTSATKVLEEVEEEVVDYEPWMSDYGKQPHGIEFDTDSQLCSLHPEIWLKPSVI 247          
BLAST of EWM23939.1 vs. NCBI_GenBank
Match: gi|397629131|gb|EJK69213.1| (hypothetical protein THAOC_09548 [Thalassiosira oceanica])

HSP 1 Score: 89.3521 bits (220), Expect = 1.170e-15
Identity = 54/129 (41.86%), Postives = 72/129 (55.81%), Query Frame = 0
Query:   86 VFPARLVNLPCVVEVHKTVDYVTLFKSADVGQMVVVYKDEAAMLEDMLREEEERGKMREKGGKDDEGKAELSLRAQLDYYHSGLTPPTTNIVRRRFA---ETRMHGPY--PAATVAKVQGELAAHVAAL 209
             +PARLVNLPC VEVHKT+D+    K++DVGQM++VY+DE +M               E+   D E K E        Y+HSGLTPP   +V+RRF    E R   P   P + V++V+ EL   +A L
Sbjct:   90 TYPARLVNLPCPVEVHKTLDHANYHKASDVGQMLIVYEDEYSM---------------EEAENDKEYKVE----GFPSYFHSGLTPPMRRVVQRRFLSRFEERDTKPVPPPRSEVSQVETELQELIAKL 199          
BLAST of EWM23939.1 vs. NCBI_GenBank
Match: gi|698801980|ref|XP_009834019.1| (hypothetical protein H257_09491 [Aphanomyces astaci] >gi|574110977|gb|ETV76474.1| hypothetical protein H257_09491 [Aphanomyces astaci])

HSP 1 Score: 87.4261 bits (215), Expect = 3.919e-15
Identity = 58/184 (31.52%), Postives = 89/184 (48.37%), Query Frame = 0
Query:   76 GKDDESERARV----FPARLVNLPCVVEVHKTVDYVTLFKSADVGQMVVVYKD-EAAMLEDMLREEEERGKMREKGGKDDEGKAELSLRAQLDYYHSGLTPPTTNIVRRRFAETRMHGPYPAATVAKVQGELAAHVAALEEKREVSEVVEDVVDFEDYMA-DMHGQPVTIAEDSALWLEHPELL 253
            G D+ + + R+     PA L  LPC+VE HKT D    +KS D+GQ+++V+   E  ML + + E                                G+TPPTTNIV+R++A+TR    +P A VA+V+  L   +A       + +V E++VDF D+M  D H   + + ++      HPE L
Sbjct:   34 GADNRNFKFRIDDTELPATLCQLPCIVETHKTYDEKLFYKSGDIGQILLVHDTPEEQMLYETVTE-----------------------------LPGGITPPTTNIVKRKYAKTRKSPIFPKADVARVEDTLVKIIAG----GIIEDVQEELVDFYDWMVDDEHPNGIVVHDEMDFIQRHPEYL 184          
BLAST of EWM23939.1 vs. NCBI_GenBank
Match: gi|675200789|ref|XP_008909279.1| (hypothetical protein, variant 1 [Phytophthora parasitica INRA-310] >gi|568090471|gb|ETN05304.1| hypothetical protein, variant 1 [Phytophthora parasitica INRA-310])

HSP 1 Score: 87.0409 bits (214), Expect = 4.273e-15
Identity = 52/170 (30.59%), Postives = 88/170 (51.76%), Query Frame = 0
Query:   85 RVFPARLVNLPCVVEVHKTVDYVTLFKSADVGQMVVVYKDEAAMLEDMLREEEERGKMREKGGKDDEGKAELSLRAQLDYYHSGLTPPTTNIVRRRFAETRMHGPYPAATVAKVQGELAAHVAALEEKREVSEVVEDVVDFEDYMA-DMHGQPVTIAEDSALWLEHPELL 253
            + +PA++  LP ++E HKT D    +KS ++GQ+ VV             ++EE  K+ E                  D   +G+TPP TN+++R++ +T+   P+P   VA+V+ +L   +A       + +V E++VDF D+MA D H   +T+ ++  L  EHPE L
Sbjct:   17 KKYPAKIAQLPTILETHKTYDDNFFYKSGEIGQIFVV------------TDKEEEKKLLEMQ----------------DEVPNGITPPNTNVIKRKYEKTKKTTPFPKPDVARVEEDLVKIIAG----GVIEDVHEELVDFYDWMADDEHPGGITVMDEMELIREHPEYL 154          
The following BLAST results are available for this feature:
BLAST of EWM23939.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585105224|gb|EWM23939.1|0.000e+0100.00transcription initiation factor tfiid subunit [Nan... [more]
gi|298712792|emb|CBJ48757.1|5.080e-1837.25conserved unknown protein [Ectocarpus siliculosus][more]
gi|224007397|ref|XP_002292658.1|1.253e-1746.51predicted protein [Thalassiosira pseudonana CCMP13... [more]
gi|1214710918|gb|OWZ21966.1|1.451e-1632.14hypothetical protein PHMEG_0003388 [Phytophthora m... [more]
gi|1210525137|dbj|GAX16071.1|1.906e-1636.73hypothetical protein FisN_20Hh253 [Fistulifera sol... [more]
gi|695446433|ref|XP_009534480.1|2.291e-1625.91hypothetical protein PHYSODRAFT_564209 [Phytophtho... [more]
gi|1210512077|dbj|GAX28932.1|2.338e-1636.22hypothetical protein FisN_20Lh253 [Fistulifera sol... [more]
gi|397629131|gb|EJK69213.1|1.170e-1541.86hypothetical protein THAOC_09548 [Thalassiosira oc... [more]
gi|698801980|ref|XP_009834019.1|3.919e-1531.52hypothetical protein H257_09491 [Aphanomyces astac... [more]
gi|675200789|ref|XP_008909279.1|4.273e-1530.59hypothetical protein, variant 1 [Phytophthora para... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6763rna6763Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications