EWM23939.1, cds6747 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM23939.1 vs. NCBI_GenBank
Match: gi|585105224|gb|EWM23939.1| (transcription initiation factor tfiid subunit [Nannochloropsis gaditana]) HSP 1 Score: 934.48 bits (2414), Expect = 0.000e+0 Identity = 470/470 (100.00%), Postives = 470/470 (100.00%), Query Frame = 0 Query: 1 MSGHYAQQAFVLRLPEHLEEIIRARLRAGNMDGVQLTARPDGSEGLPKYAAKRGGLLELRLGGGRRASEEDLYSDGKDDESERARVFPARLVNLPCVVEVHKTVDYVTLFKSADVGQMVVVYKDEAAMLEDMLREEEERGKMREKGGKDDEGKAELSLRAQLDYYHSGLTPPTTNIVRRRFAETRMHGPYPAATVAKVQGELAAHVAALEEKREVSEVVEDVVDFEDYMADMHGQPVTIAEDSALWLEHPELLIHRPVVLAPDDPALGPAASALPAAPKPFPADAAYDPAFIQEGSTAPTSKGSSRPGKGGGGRGSPVRGRGGRSTRSARSGRRGRTQRQGGADASPAARAAASDSSLPPVAISGCPEGASAPLIMLEPPAGPPSYGEMQPPPPPPSHRRHREPKESRITGGQRVGGPVITGNLPAPDVPPDPEFDNAFLGEDGEDDFLDFLEGGVEEEGGLMDEGFLEL 470 MSGHYAQQAFVLRLPEHLEEIIRARLRAGNMDGVQLTARPDGSEGLPKYAAKRGGLLELRLGGGRRASEEDLYSDGKDDESERARVFPARLVNLPCVVEVHKTVDYVTLFKSADVGQMVVVYKDEAAMLEDMLREEEERGKMREKGGKDDEGKAELSLRAQLDYYHSGLTPPTTNIVRRRFAETRMHGPYPAATVAKVQGELAAHVAALEEKREVSEVVEDVVDFEDYMADMHGQPVTIAEDSALWLEHPELLIHRPVVLAPDDPALGPAASALPAAPKPFPADAAYDPAFIQEGSTAPTSKGSSRPGKGGGGRGSPVRGRGGRSTRSARSGRRGRTQRQGGADASPAARAAASDSSLPPVAISGCPEGASAPLIMLEPPAGPPSYGEMQPPPPPPSHRRHREPKESRITGGQRVGGPVITGNLPAPDVPPDPEFDNAFLGEDGEDDFLDFLEGGVEEEGGLMDEGFLEL Sbjct: 1 MSGHYAQQAFVLRLPEHLEEIIRARLRAGNMDGVQLTARPDGSEGLPKYAAKRGGLLELRLGGGRRASEEDLYSDGKDDESERARVFPARLVNLPCVVEVHKTVDYVTLFKSADVGQMVVVYKDEAAMLEDMLREEEERGKMREKGGKDDEGKAELSLRAQLDYYHSGLTPPTTNIVRRRFAETRMHGPYPAATVAKVQGELAAHVAALEEKREVSEVVEDVVDFEDYMADMHGQPVTIAEDSALWLEHPELLIHRPVVLAPDDPALGPAASALPAAPKPFPADAAYDPAFIQEGSTAPTSKGSSRPGKGGGGRGSPVRGRGGRSTRSARSGRRGRTQRQGGADASPAARAAASDSSLPPVAISGCPEGASAPLIMLEPPAGPPSYGEMQPPPPPPSHRRHREPKESRITGGQRVGGPVITGNLPAPDVPPDPEFDNAFLGEDGEDDFLDFLEGGVEEEGGLMDEGFLEL 470
BLAST of EWM23939.1 vs. NCBI_GenBank
Match: gi|298712792|emb|CBJ48757.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 95.5153 bits (236), Expect = 5.080e-18 Identity = 76/204 (37.25%), Postives = 97/204 (47.55%), Query Frame = 0 Query: 1 MSGHYAQQAFVLRLPEHLEEIIRARLRAGN-MDGVQLTARPDGSEGLPKYAAKRGGLLELRLGGGRRASEEDLYSDGKDDESERARVFPARLVNLPCVVEVHKTVDYVTLFKSADVGQMVVVYKDEAAMLEDMLREEEERGKMREKGGKDDEGKAELSLRAQLDYYHSGLTPPTTNIVRRRFAETR-MHGPYPAATVAKVQGEL 202 MS Y Q VLRLP+ L+E +R R+ A M+GV T GS RR + DGK +PARLV++PCV+E KT+D T FKS DVGQM++VYKDE A K D+G A +L Y GLTPPT NIVRRRF + R G + A V +V+ ++ Sbjct: 1 MSTTYRQ--LVLRLPDGLKEAMRERVAADTGMEGVDFTPEKKGS---------------------RRFT---FTMDGKK--------YPARLVDMPCVLETQKTLDKRTFFKSGDVGQMLIVYKDENAY-------------------KKDDGNASGVGPQRL--YPDGLTPPTKNIVRRRFVKARPDRGKFDRAEVIRVESQV 149
BLAST of EWM23939.1 vs. NCBI_GenBank
Match: gi|224007397|ref|XP_002292658.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220971520|gb|EED89854.1| predicted protein [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 94.7449 bits (234), Expect = 1.253e-17 Identity = 60/129 (46.51%), Postives = 73/129 (56.59%), Query Frame = 0 Query: 86 VFPARLVNLPCVVEVHKTVDYVTLFKSADVGQMVVVYKDEAAMLEDMLREEEERGKMREKGGKDDEGKAELSLRAQLDYYHSGLTPPTTNIVRRRFA---ETRMHGPYP--AATVAKVQGELAAHVAAL 209 +PARLVNLPC VEVHKT D+ T KSADVGQM++VY+DE AM EE E EKG K + L YYHSG+TPP +VRRRF E R P P + V +V+ E+ + L Sbjct: 91 TYPARLVNLPCPVEVHKTHDHATYHKSADVGQMLIVYEDEYAM------EEAE----NEKGYK---------IEGFLSYYHSGITPPMKRVVRRRFLSRFEERDVKPVPPYRSEVTEVEKEIQNLITKL 200
BLAST of EWM23939.1 vs. NCBI_GenBank
Match: gi|1214710918|gb|OWZ21966.1| (hypothetical protein PHMEG_0003388 [Phytophthora megakarya]) HSP 1 Score: 91.6633 bits (226), Expect = 1.451e-16 Identity = 54/168 (32.14%), Postives = 87/168 (51.79%), Query Frame = 0 Query: 87 FPARLVNLPCVVEVHKTVDYVTLFKSADVGQMVVVYKDEAAMLEDMLREEEERGKMREKGGKDDEGKAELSLRAQLDYYHSGLTPPTTNIVRRRFAETRMHGPYPAATVAKVQGELAAHVAALEEKREVSEVVEDVVDFEDYMAD-MHGQPVTIAEDSALWLEHPELL 253 +PAR+ LP ++E HKT D +KS ++GQ+ VV ++EE K+ E D +GLTPP TN+++R++ +T+ P+P VA+V+ +L + A + +V E++VDF D+MAD H +T+ ++ L EHPE L Sbjct: 48 YPARIAQLPTILETHKTYDDNFFYKSGEIGQIFVV------------TDKEEEKKLLESQ----------------DEVPNGLTPPNTNVIKRKYEKTKKTTPFPKPDVARVEEDLVKIINA---NGAIEDVHEELVDFYDWMADEEHPNGITVTDEMELIREHPEYL 184
BLAST of EWM23939.1 vs. NCBI_GenBank
Match: gi|1210525137|dbj|GAX16071.1| (hypothetical protein FisN_20Hh253 [Fistulifera solaris]) HSP 1 Score: 90.8929 bits (224), Expect = 1.906e-16 Identity = 72/196 (36.73%), Postives = 94/196 (47.96%), Query Frame = 0 Query: 86 VFPARLVNLPCVVEVHKTVDYVTLFKSADVGQMVVVYKDEAAMLEDMLREEEERGKMREKGGKDDEGKAELSLRAQLDYYHSGLTPPTTNIVRRRFAETRMHG--PYPAATVAKVQGELAAHVAALEE----KREVSEVVEDVV--------------DFEDYMADMHGQPVTIA--EDSALWLEHPELLIHRPVV 259 +PA+LVNLPC VE+HKT D+ KS D+ QM++VY+D+ A L E EE K EG +YYHSGLTPPT IV RRFA R H P P + A V+ EL + L KR + V + D+E +M+D QP+ I DS L HPE+ + V+ Sbjct: 76 TYPAKLVNLPCPVELHKTHDHAIYIKSVDIAQMLIVYEDDMA-----LEEAEE---------KPPEG---------FNYYHSGLTPPTRRIVERRFA-AREHKAMPPPRSASAYVETELLELMEKLARDDKGKRNKATKVPTLTSATKVLEEVEEEVVDYEPWMSDFGKQPLGIEFDTDSQLCSLHPEIWLKPSVI 247
BLAST of EWM23939.1 vs. NCBI_GenBank
Match: gi|695446433|ref|XP_009534480.1| (hypothetical protein PHYSODRAFT_564209 [Phytophthora sojae] >gi|348669797|gb|EGZ09619.1| hypothetical protein PHYSODRAFT_564209 [Phytophthora sojae]) HSP 1 Score: 90.8929 bits (224), Expect = 2.291e-16 Identity = 64/247 (25.91%), Postives = 112/247 (45.34%), Query Frame = 0 Query: 8 QAFVLRLPEHLEEIIRARLRAGNMDGVQLTARPDGSEGLPKYAAKRGGLLELRLGGGRRASEEDLYSDGKDDESERARVFPARLVNLPCVVEVHKTVDYVTLFKSADVGQMVVVYKDEAAMLEDMLREEEERGKMREKGGKDDEGKAELSLRAQLDYYHSGLTPPTTNIVRRRFAETRMHGPYPAATVAKVQGELAAHVAALEEKREVSEVVEDVVDFEDYMA-DMHGQPVTIAEDSALWLEHPELL 253 + ++L+LP+ L + +RA + G V + + D L+ +GK+ +PA++ LPC++E HKT D +KS ++GQ+ VV KD+E K L + +G+TPP TN+++R++ +T+ P+P VA+V+ +L +A + +V E++VDF ++MA D H +T+ ++ L EHPE L Sbjct: 2 EQYLLQLPKRLAQEVRAGIANGESANVDIVSGADNKHFT-------------------------LHVNGKE--------YPAKIAQLPCILETHKTYDDNFFYKSGEIGQIFVV------------------------TDKDEERK----LLETQEEVTNGITPPNTNVIKRKYEKTKKTTPFPKGDVARVEEDLVKIIAG----GAIEDVHEELVDFYEWMADDEHPNGITVTDEMELIREHPEYL 183
BLAST of EWM23939.1 vs. NCBI_GenBank
Match: gi|1210512077|dbj|GAX28932.1| (hypothetical protein FisN_20Lh253 [Fistulifera solaris]) HSP 1 Score: 90.5077 bits (223), Expect = 2.338e-16 Identity = 71/196 (36.22%), Postives = 93/196 (47.45%), Query Frame = 0 Query: 86 VFPARLVNLPCVVEVHKTVDYVTLFKSADVGQMVVVYKDEAAMLEDMLREEEERGKMREKGGKDDEGKAELSLRAQLDYYHSGLTPPTTNIVRRRFAETRMHG--PYPAATVAKVQGELAAHVAALEE----KREVSEVVEDVV--------------DFEDYMADMHGQP--VTIAEDSALWLEHPELLIHRPVV 259 +PA+LVNLPC VE+HKT D+ KS D+ QM++VY+D+ A L E EE K EG +YYHSGLTPPT IV RRFA R H P P + A V+ EL + L KR + V + D+E +M+D QP + DS L HPE+ + V+ Sbjct: 76 TYPAKLVNLPCPVELHKTHDHAIYIKSVDIAQMLIVYEDDMA-----LEEAEE---------KPPEG---------FNYYHSGLTPPTRRIVERRFA-AREHKAMPPPRSASAYVETELLELMEKLTRDDKGKRNKATKVPTLTSATKVLEEVEEEVVDYEPWMSDYGKQPHGIEFDTDSQLCSLHPEIWLKPSVI 247
BLAST of EWM23939.1 vs. NCBI_GenBank
Match: gi|397629131|gb|EJK69213.1| (hypothetical protein THAOC_09548 [Thalassiosira oceanica]) HSP 1 Score: 89.3521 bits (220), Expect = 1.170e-15 Identity = 54/129 (41.86%), Postives = 72/129 (55.81%), Query Frame = 0 Query: 86 VFPARLVNLPCVVEVHKTVDYVTLFKSADVGQMVVVYKDEAAMLEDMLREEEERGKMREKGGKDDEGKAELSLRAQLDYYHSGLTPPTTNIVRRRFA---ETRMHGPY--PAATVAKVQGELAAHVAAL 209 +PARLVNLPC VEVHKT+D+ K++DVGQM++VY+DE +M E+ D E K E Y+HSGLTPP +V+RRF E R P P + V++V+ EL +A L Sbjct: 90 TYPARLVNLPCPVEVHKTLDHANYHKASDVGQMLIVYEDEYSM---------------EEAENDKEYKVE----GFPSYFHSGLTPPMRRVVQRRFLSRFEERDTKPVPPPRSEVSQVETELQELIAKL 199
BLAST of EWM23939.1 vs. NCBI_GenBank
Match: gi|698801980|ref|XP_009834019.1| (hypothetical protein H257_09491 [Aphanomyces astaci] >gi|574110977|gb|ETV76474.1| hypothetical protein H257_09491 [Aphanomyces astaci]) HSP 1 Score: 87.4261 bits (215), Expect = 3.919e-15 Identity = 58/184 (31.52%), Postives = 89/184 (48.37%), Query Frame = 0 Query: 76 GKDDESERARV----FPARLVNLPCVVEVHKTVDYVTLFKSADVGQMVVVYKD-EAAMLEDMLREEEERGKMREKGGKDDEGKAELSLRAQLDYYHSGLTPPTTNIVRRRFAETRMHGPYPAATVAKVQGELAAHVAALEEKREVSEVVEDVVDFEDYMA-DMHGQPVTIAEDSALWLEHPELL 253 G D+ + + R+ PA L LPC+VE HKT D +KS D+GQ+++V+ E ML + + E G+TPPTTNIV+R++A+TR +P A VA+V+ L +A + +V E++VDF D+M D H + + ++ HPE L Sbjct: 34 GADNRNFKFRIDDTELPATLCQLPCIVETHKTYDEKLFYKSGDIGQILLVHDTPEEQMLYETVTE-----------------------------LPGGITPPTTNIVKRKYAKTRKSPIFPKADVARVEDTLVKIIAG----GIIEDVQEELVDFYDWMVDDEHPNGIVVHDEMDFIQRHPEYL 184
BLAST of EWM23939.1 vs. NCBI_GenBank
Match: gi|675200789|ref|XP_008909279.1| (hypothetical protein, variant 1 [Phytophthora parasitica INRA-310] >gi|568090471|gb|ETN05304.1| hypothetical protein, variant 1 [Phytophthora parasitica INRA-310]) HSP 1 Score: 87.0409 bits (214), Expect = 4.273e-15 Identity = 52/170 (30.59%), Postives = 88/170 (51.76%), Query Frame = 0 Query: 85 RVFPARLVNLPCVVEVHKTVDYVTLFKSADVGQMVVVYKDEAAMLEDMLREEEERGKMREKGGKDDEGKAELSLRAQLDYYHSGLTPPTTNIVRRRFAETRMHGPYPAATVAKVQGELAAHVAALEEKREVSEVVEDVVDFEDYMA-DMHGQPVTIAEDSALWLEHPELL 253 + +PA++ LP ++E HKT D +KS ++GQ+ VV ++EE K+ E D +G+TPP TN+++R++ +T+ P+P VA+V+ +L +A + +V E++VDF D+MA D H +T+ ++ L EHPE L Sbjct: 17 KKYPAKIAQLPTILETHKTYDDNFFYKSGEIGQIFVV------------TDKEEEKKLLEMQ----------------DEVPNGITPPNTNVIKRKYEKTKKTTPFPKPDVARVEEDLVKIIAG----GVIEDVHEELVDFYDWMADDEHPGGITVMDEMELIREHPEYL 154 The following BLAST results are available for this feature:
BLAST of EWM23939.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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