rna6762, rna6762 (mRNA) Nannochloropsis gaditana

Overview
Namerna6762
Unique Namerna6762
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length741
Alignment locationCM002469.1:442500..443331 -

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100082g13.9363.mrna
Orig protein idgnl|cribi|Naga_100082g13.9363
GbkeymRNA
Noteencoded by transcript variant 2; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002469.1supercontigCM002469.1:442500..443331 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100082g13gene6536Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna6762rna6762-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM23931.1cds6746Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna6762 ID=rna6762|Name=rna6762|organism=Nannochloropsis gaditana|type=mRNA|length=741bp
CAAAAGCTAGTGTCCTTGTCGGGCGGCTCCCCGCTAAACGGGGTTTAGAG
GTAGCGGCAAAGCGATACGAGCCTCCTCTCGAAGGCGATGAGGTCGTCGA
AGCCGGGGCACGGGTGATGGACAAGTGCACGCCTGCGCACGCACGGCACT
CTATACCGATGGTGCTGATCATATGTACGCCACCGCGCATACAGAGCCTA
ATTTCGGGGATCAGAGCCACGCTTTTGGAGTCATCATGTTTCCAGGTCGT
CGTTCGTTTCTGTTGGTCCTGCTCATGGTAGGACTGATTGGTACGGCCAC
GCTGGCCTTCCTGCTGCGGACGGGACCTCCTTCACGATCATGCAGTGCAC
TCGATGCGGAGAGAAGAAGTGAAATGGCGACACGTCGTGTCGGAGTGCAG
CAAATTGCTTTCAGTTTGTTGACACCATTCGTCTTGACGGCAGGTGCAGA
TGTCGCTGCAGCTGTGGATCCAGCACGGGTGGGTACCAAAAAGGATCCTG
CGTACGAGAAATGCTTGAGCTCTTGCATTTACTTTTGCCTGAAGCCGAAG
GGTGCCGAGACGAGGACTCGCTCGGACTGCTTGCCAGACTGCAAGGCCAA
GTGCGCTCAAACGGATGCGCAGAAGCTACTGGGAGTTCCAAAGAAATGAG
CGCTGTAGTATTCCATCGCGGAAATGCATAAGCTCTCCACCTTCATAAGC
CTGAAATTAAAAGAACAACGATACGTGAAAATCAGAACAAC
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protein sequence of rna6762

>rna6762-protein ID=rna6762-protein|Name=rna6762|organism=Nannochloropsis gaditana|type=polypeptide|length=113bp
MYATAHTEPNFGDQSHAFGVIMFPGRRSFLLVLLMVGLIGTATLAFLLRT
GPPSRSCSALDAERRSEMATRRVGVQQIAFSLLTPFVLTAGADVAAAVVR
PLSCVSYYSRISS
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mRNA from alignment at CM002469.1:442500..443331-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna6762 ID=rna6762|Name=rna6762|organism=Nannochloropsis gaditana|type=mRNA|length=832bp|location=Sequence derived from alignment at CM002469.1:442500..443331- (Nannochloropsis gaditana)
CAAAAGCTAGTGTCCTTGTCGGGCGGCTCCCCGCTAAACGGGGTTTAGAG
GTAGCGGCAAAGCGATACGAGCCTCCTCTCGAAGGCGATGAGGTCGTCGA
AGCCGGGGCACGGGTGATGGACAAGTGCACGCCTGCGCACGCACGGCACT
CTATACCGATGGTGCTGATCATATGTACGCCACCGCGCATACAGAGCCTA
ATTTCGGGGATCAGAGCCACGCTTTTGGAGTCATCATGTTTCCAGGTAAT
GGCAGGGTCTGGCACCAACGGTCGCCACCACATCCTCCCGTGCATCCTGT
TTTCCAAGGCCCAGGTGCTTTACCGTCTGCATCATTGTCATACTGAACAC
CCTTTATCCTTGGCATTAGGTCGTCGTTCGTTTCTGTTGGTCCTGCTCAT
GGTAGGACTGATTGGTACGGCCACGCTGGCCTTCCTGCTGCGGACGGGAC
CTCCTTCACGATCATGCAGTGCACTCGATGCGGAGAGAAGAAGTGAAATG
GCGACACGTCGTGTCGGAGTGCAGCAAATTGCTTTCAGTTTGTTGACACC
ATTCGTCTTGACGGCAGGTGCAGATGTCGCTGCAGCTGTGGTGAGACCTC
TTTCTTGCGTTTCGTATTATTCAAGAATTTCATCTTAATTATTCATTTTT
TCATTCCTTTACTCTACATTATCGGTGAACTTTCAATGTGGTATTATTTT
CTTCCCTTCAAACGCCCTTGATTTATCATATTCTACACATTTGAATGTGT
GCATTTCAAGACAGAAAACCTCTTTCGCCGTCCGCCCCTCATTGAACACA
TTTTCTTTTCACATTTAATACTGCACTACCGT
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Coding sequence (CDS) from alignment at CM002469.1:442500..443331-

>rna6762 ID=rna6762|Name=rna6762|organism=Nannochloropsis gaditana|type=CDS|length=684bp|location=Sequence derived from alignment at CM002469.1:442500..443331- (Nannochloropsis gaditana)
GTCGTCGTTCGTTTCTGTTGGTCCTGCTCATGGTAGGACTGATTGGTACG
GCCACGCTGGCCTTCCTGCTGCGGACGGGACCTCCTTCACGATCATGCAG
TGCACTCGATGCGGAGAGAAGAAGTGAAATGGCGACACGTCGTGTCGGAG
TGCAGCAAATTGCTTTCAGTTTGTTGACACCATTCGTCTTGACGGCAGGT
GCAGATGTCGCTGCAGCTGTGGTGAGACCTCTTTCTTGCGTTTCGTATTA
TTCAAGAATTTCATCTTAAATGTACGCCACCGCGCATACAGAGCCTAATT
TCGGGGATCAGAGCCACGCTTTTGGAGTCATCATGTTTCCAGGTCGTCGT
TCGTTTCTGTTGGTCCTGCTCATGGTAGGACTGATTGGTACGGCCACGCT
GGCCTTCCTGCTGCGGACGGGACCTCCTTCACGATCATGCAGTGCACTCG
ATGCGGAGAGAAGAAGTGAAATGGCGACACGTCGTGTCGGAGTGCAGCAA
ATTGCTTTCAGTTTGTTGACACCATTCGTCTTGACGGCAGGTGCAGATGT
CGCTGCAGCTGTGGTGAGACCTCTTTCTTGCGTTTCGTATTATTCAAGAA
TTTCATCTTAAATGTACGCCACCGCGCATACAGAGCCTAATTTCGGGGAT
CAGAGCCACGCTTTTGGAGTCATCATGTTTCCAG
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Synonyms
Publications