EWM23931.1, cds6746 (CDS) Nannochloropsis gaditana

Overview
NameEWM23931.1
Unique Namecds6746
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002469.1:443087..443159 -
Alignment locationCM002469.1:442694..442962 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM23931.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100082g13.9363.mrna
GbkeyCDS
Noteencoded by transcript variant 2; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002469.1supercontigCM002469.1:443087..443159 -
CM002469.1supercontigCM002469.1:442694..442962 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
[Close]
BLAST of EWM23931.1 vs. NCBI_GenBank
Match: gi|585105216|gb|EWM23931.1| (hypothetical protein Naga_100082g13 [Nannochloropsis gaditana])

HSP 1 Score: 227.254 bits (578), Expect = 2.155e-75
Identity = 113/113 (100.00%), Postives = 113/113 (100.00%), Query Frame = 0 
Query:    1 MYATAHTEPNFGDQSHAFGVIMFPGRRSFLLVLLMVGLIGTATLAFLLRTGPPSRSCSALDAERRSEMATRRVGVQQIAFSLLTPFVLTAGADVAAAVVRPLSCVSYYSRISS 113
            MYATAHTEPNFGDQSHAFGVIMFPGRRSFLLVLLMVGLIGTATLAFLLRTGPPSRSCSALDAERRSEMATRRVGVQQIAFSLLTPFVLTAGADVAAAVVRPLSCVSYYSRISS
Sbjct:    1 MYATAHTEPNFGDQSHAFGVIMFPGRRSFLLVLLMVGLIGTATLAFLLRTGPPSRSCSALDAERRSEMATRRVGVQQIAFSLLTPFVLTAGADVAAAVVRPLSCVSYYSRISS 113
[Close]
BLAST of EWM23931.1 vs. NCBI_GenBank
Match: gi|585105215|gb|EWM23930.1| (hypothetical protein Naga_100082g13 [Nannochloropsis gaditana])

HSP 1 Score: 198.364 bits (503), Expect = 2.343e-63
Identity = 98/98 (100.00%), Postives = 98/98 (100.00%), Query Frame = 0 
Query:    1 MYATAHTEPNFGDQSHAFGVIMFPGRRSFLLVLLMVGLIGTATLAFLLRTGPPSRSCSALDAERRSEMATRRVGVQQIAFSLLTPFVLTAGADVAAAV 98
            MYATAHTEPNFGDQSHAFGVIMFPGRRSFLLVLLMVGLIGTATLAFLLRTGPPSRSCSALDAERRSEMATRRVGVQQIAFSLLTPFVLTAGADVAAAV
Sbjct:    1 MYATAHTEPNFGDQSHAFGVIMFPGRRSFLLVLLMVGLIGTATLAFLLRTGPPSRSCSALDAERRSEMATRRVGVQQIAFSLLTPFVLTAGADVAAAV 98
The following BLAST results are available for this feature:
BLAST of EWM23931.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 2
Match NameE-valueIdentityDescription
gi|585105216|gb|EWM23931.1|2.155e-75100.00hypothetical protein Naga_100082g13 [Nannochlorops... [more]
gi|585105215|gb|EWM23930.1|2.343e-63100.00hypothetical protein Naga_100082g13 [Nannochlorops... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6762rna6762Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications