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Properties
| Property Name | Value |
|---|
| Product | rhomboid domain-containing protein 1 |
| Orig transcript id | gnl|cribi|Naga_100379g3.1018.mrna |
| Orig protein id | gnl|cribi|Naga_100379g3.1018 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002456.1 | supercontig | CM002456.1:142996..144919 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna676 ID=rna676|Name=rna676|organism=Nannochloropsis gaditana|type=mRNA|length=3578bp
CATCCAGTGAGAAGCGGCTTCCATGCGATATTCTCGCAGACTGCTGATTG
GAATTGTCAACCTTAAAGTACAGGAAGAGAATGGGAGATTTTCATGTTTG
CGACTGGCTCGAGTCCGTCGGTAAGTGCTCTATACTTTTCTTGGCTTATG
ATTACTTTGCGTGTCTGACCGTCACCCTCTTTCCACGATATTTCAGGCCT
TGGGTACTCGATTCCTAGATTTCAAGAGCTAGGTATATGTACCCCTGAGA
GATTGGCTGCGTTTCCCTTTTCTGACTATGATCGAGCTGGCGTCGTGGAT
ATCAACCATCGAAGAAAGCTTTTTTTCCTGATCCAGCGCCTCAACCTGGC
TCTTGAGGAACAGACGAGAAAGATTGCGAGAGGGGTTCCTACAACAAAGC
GCGATGAAGACGAAGCCTTATCTGCGTCTCAGTATGCACAAGTAATGAAT
GTGGATCTATCATCTATTCATCTGAATTGTGAAGTAAATGGACAGACATT
GCCGGACAGATTGGATAAGGACGGACACGGAAGCGAGCATGAAAGCCTCC
TAATCACTAAAAGAGAAGACGGTAGCTCCTCTAAAGCCTCGCGTCGGACG
CCATCTGCACAGTCGTTGCCCGCATCCAGCGAGCTAACAGCGCTCTCTAC
CCAATCTATCGAAAAATGTGGACCCGAGGCAGTGACGCCATTCGAAACAG
CACACCTTTCCTCCCGAATTCCCTCCGCTCCGCCCTCCTCCCAGTCCTCC
GCCCCAACCTCCACGTCCACTTCCTCTCCTCCTGTCGGCCCGAATGCCAG
CTTGCACTCGAAATTCAGCCTTTCTAGAAACTTCCTTTCCGCCATAGGTG
TCCGTAAGAGCAAGACCGGGCCAGTCACGGCAGCCTCCCCGTATCAGGCT
TCTATCTCTGCGGTGTACGCACGCACAGAAATGGAACCTTCTCCCATGAG
AGAGCCGCAGAGGCAGAGCCTAAATGCCAGCGCTGACCTCAGCTACAGCG
GATCAAGTCTTACCAGCACCAATTCGAGCATCTCGCATGTCCGACGGAAC
TCCTCGCCCCTGCACCCGTACCAAGCCCTGGTGGACTGTATCCTGGCGGG
GCCCGTGGACGAGACGACGATCCGGGTGGCTGTGCGGAAGCGTCCGTTGA
GCGCCGCAGAACGGGGCAATAAGGACACAGACATCATCGAGATCCAACCT
CCTCGCAACGTGGTCATACACGAGCCGAAGAAGCAGCTGGATTTGACGCC
GGTGACGGAATCCCACTACTTTGCCTTTGACCACACCTTCGGCGCAGAGG
TTCCTAATGACCGCGTGTATCACACGGTTTGCCTGCCTTTGGTCGTGTCC
ATGTTCCGTGGAGGGAAGTCCACCTGTTTTGCCTACGGACAAACGGGGTC
AGGAAAGACGTTTGCGATGATGGGGGACCAAGGCAGAGAGCGGGCGGGAG
GGGGAAAGGGACGGAAGGGCCAACCCACAGGGGAGGGCTGGGAGAACGCA
GGACTCTACGCACTGGCCGCCCGGGATATTTTTCAGGTCTTGGCCCACCC
GGCCTTTGCCTCGCGTGGGTGGACGCTGCATGTGAGTTTCTTCGAGATTT
ATGGCGGGAAGCTCTTCGATTTGTTGAACCGGCGGGCGCCTGTCCGATGT
TTGGAGGACGCGAGGCAGCATGTTCAATTTCTGGGACTGACGGAAAAAGC
GATGGTAAGCGTGGAGGATCTTTTGACCACCATCGCGGAGGGACAGAGCC
AAAGGTCGACGGGCTCCACGGCCGCGAATGCCGATTCTTCGCGCTCCCAC
GCAGTTTTGCAACTCAGCCTGAAAGGTCATGCCTGTGCAGAAAGATCAGC
GGGCAGGTCCCCGGCGACGTCCGGCTCCGAAGCGAAGAGCATGCTGCAGC
ACGGCAAACGGAACGTGCGTGTGAAGGACAGCAACCAGGGAAGGCTAAAA
GAGCCCGTCATTGGCAGCTTCTCGTTCATCGATTTGGCAGGTTCGGAACG
CGGCGCTGACACGCGCAATACCGAGAAAGCGACCCGGATGGAGGGGGCGG
AGATCAATACCTCGCTCTTGGCGCTGAAAGAAGTGATTCGAGCGCTGGAC
CGTAAACAAAACCACACGCCCTTCCGGGGTAGCAAGCTCACACAAGTCTT
GAAAGACTCCCTTGTTGGTGCCAGGGCAAAGACCGCGATGCTTGCTTGCA
TTGCCCCCGCCCTCTCCAGTTGCGAGCACACGCTCAACACCTTGCGCTAT
GCGGATAGGGTCAAGGAGAACGACGCCTCCGCCGTGCCCGGTCCGGAGAA
CCTCCTCGCTCCCATTGCCACGCCCGTGACCTGGGATAAAGATAGCCGGG
ACACCCCAGCCGGGGGGGAGCATAAGCCCTCTTCAACCGGGAGGTCGATG
CTCACATCCTCCCTCAGCGATGAAGAGGAGCGCGTCCTCGCCGTTTCCGC
CGAGACGGGAGGCCAGGGTATGAGGAGCGGGAGGAACAGAGAAAACGCGA
ACTTAAGCGCGACAGTGAATGGCACAGGCAACTGTCGCTGGTCAGCTGTC
TCTGCTTCAAGCCTTAGGAAAGGCCAGCAGCTTGCGTTCTTGTCGCGCAC
GACCCCGGGAAGGCACTCAGAAAGGTCGTGCAGAGGACGAGAGGGAGGGG
GAGAGCGTCGTCATCTCCATGGGACTCGCACCTTGCCAGAGTCCTCTTTG
CCAGAGCTGCCGCAGATACCAAACCAACAAGGGACGCAAACGGCGCTTCG
TGGCCAACAGCCTCCGCTTTGCCCCTCCCCCGCGGTCGAGGCGGGGGACA
TGCAACGGTACGTAGAGCACTTGAAGCAGCTGCGGGAGACCGTGTGCGTG
GAGCGTGAGGCGCAACGGTGGCGACGACGGCAGCGACGGCGTCAGAAAGG
GACGGAACGGGGCGCCGAAACCATCCCAGCGGAAGAGGAAGAGGACAATG
GCCAGGAAGAAGGAGTCGCGCGGAGGCAAGCGGAAAAGGAGGAAAAGGCT
GAGAAAGCAGCAGTGTATCGCACGGCCACGCACGTGCTGATCGGGGCCCA
CCAGAGTGCGCATGTGCAGCTATTGTCCCTCCTGCGCGAGGAGGTCGGCC
TGCTGCAGACTGCAGAGGGGGACCGACAAGACCTGATCCTGTACTTGGCT
TCCACGGAGAAGATTCTAGAAGCTCAGAAGGCACAGGCGGAAAGTCTAAT
GGCCCACGTGCAGCGGGTTAAAGCCGCCCAGTCGGAGCTTCTGGAGGGCT
AGGAGGGAAAAGGAGGGGGCTGGAGGCGGGACACGGACATTGGGGAAAGC
GTACTTGGAATGGAGAGGGAAAGGCGAAGGAGGAAAGGAAGGTTGTTCCT
GGATTGTGACAACTACTGAGCCGCAAAACCAGGAGAGTCAAATCGTCGGC
TATGGGCTTGAAGGAATAGTCTATCCGTTATCTACTTTGATAAGACATGA
GTGACAGCATCTATGTTTCAGCCGAGCTGCCCATCCAAGCTTTACTTTAG
GCGGGCATAACAATTTACCTTCTTTCGGTGTCACAGCCATCCCAACACGT
ACACTCCGCATCAAGTACCGCACAAACT back to topprotein sequence of rna676 >rna676-protein ID=rna676-protein|Name=rna676|organism=Nannochloropsis gaditana|type=polypeptide|length=326bp
MYGPPYRPRGRPYPRQGRRNNDSYIIYVLLSTIFRYINELEYKPPVTIAF
LTLNIMVHLMPEFFLPWGFDFRSVRDICLLPAHILELLPSLSSLFSSVQG
DTLGRGLGRGGRNRPRSGNVWAEFIRNNFSSYRSSSAWWSPSMHDRWREA
ASRIFLSALVHGDDVHLYYNMLSLLYKGATLERALGSLPFLRLVFFAWGV
SHTLILLLATFLHSLSFPSSSFYSCSVGFSAVLFALKYVSYARDPDSWTT
VAGFRVPLGKASWVELVVTSFLTPNASFLGHLCGILAGILIEPEIAGECT
VRDERKVCAVLDAECTCWDGCDTERR back to topmRNA from alignment at CM002456.1:142996..144919- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna676 ID=rna676|Name=rna676|organism=Nannochloropsis gaditana|type=mRNA|length=1924bp|location=Sequence derived from alignment at CM002456.1:142996..144919- (Nannochloropsis gaditana)
GCCATTGACGCCGCACGGCTTATTGGGTCTCGTTCTTTCTCGTCCCCTTC
CACATCCCTCCTTCCAGGTTCATGTACGGCCCGCCATACCGGCCACGCGG
AAGACCATATCCACGTCAAGGACGCCGAAATAATGATTCGTATATCATTT
ACGTTCTTCTTTCTACCATATTTCGGTACATCAATGAGCTGGAATACAAA
CCTCCAGTCACGATTGCCTTTTTAACGCTCAATATTATGGTCCACCTCAT
GCCTGAATTTTTCCTCCCATGGGGCTTCGACTTCCGGAGTGTCCGCGACA
TTTGTCTACTGCCCGCACATATCCTCGAGCTTCTACCCTCCTTGTCCTCC
CTCTTTTCCAGCGTCCAGGGAGACACCTTGGGGCGGGGGCTCGGACGGGG
AGGCAGAAACCGACCGCGCTCGGGCAATGTCTGGGCGGAGTTCATTCGGA
ATAATTTCTCCTCCTATCGCTCCTCCTCCGCCTGGTGGTCTCCCTCCATG
CATGACCGCTGGCGTGAAGCTGCATCTCGCATCTTTCTGTCCGCTCTCGT
CCACGGAGACGACGTGCACCTTTACTGTAGGTTACCCCCGCCTCCTCCTC
CCCTTCCTCTCCCCCTCGCTCTTTTCCCTCCTGCCTAAGGCGTCCTTGCC
TGTACTCACTGCAGATCTGCAGATCGCGTTCTACTTTTCTTCCCCTTCCG
TCTCTTTTTGTCGTTGCTCTCGCTCAACCACGCCTCCTTCCCGTCCTCGC
ACATGTCTCGCCGTCCTCTCCCTCATCCATCCCGCCTCTCACGATCCCCT
GCTGGGCTTTACTCCGCCCATTTCTCCTCTCTCCTCACTGACGCGTTGCA
CTTCTTCCTTTCCCGCCACTCCCTCCCATCCCCTTCCCCCCCCCCGTGCA
GACAACATGCTCTCCCTCCTCTACAAAGGCGCCACCCTCGAACGCGCCCT
CGGCTCCCTTCCCTTCCTCCGCCTCGTCTTCTTCGCTTGGGGGGTCTCCC
ACACACTCATCCTGCTCCTGGCCACCTTCCTTCACTCCCTCTCCTTTCCC
TCCTCCTCCTTCTACAGCTGCTCCGTCGGCTTCTCGGCCGTCCTCTTCGC
CTTGAAGTACGTATCCTACGCGAGGGACCCCGACAGTTGGACAACCGTTG
CCGGCTTCCGGGTACCCTTAGGGAAAGCCTCCTGGGTGGAGCTGGTCGTA
ACCTCCTTCTTGACTCCTAACGCGTCCTTTCTCGGGCATTTGTGCGGCAT
TTTGGCGGGAATTCTGTGGGTCGAGGGTGGGAGGGTGGGGGGGTGGCTCC
GTTGCCTGCCACGATGGAGCGCGAGGCGGACGAGATATACGTATGCTCGA
GCCTCGACAGGATATCGAGCTCCGACGCCGTCAGCCCCGCCCGCACCGGG
ATCTTGGACCGAGGGTGGGTTCGAGGACGGGAGGGAGGGAGGGAGGGCGG
GCAGGCGGTGGACGACGCAGGAAGAAGAGGATGCCGTCTTGCAAGAGGCG
CTTCGGGAGTCATTGGCGGAAGAACAACGTCGTCAAGCACGGGAAGGGAC
GGAGCGGGGGAGGGAGGGAGGGAGGGAGGGAGGGGAGGGAGTGAGGGAGG
GCTTGTTCCGACCCGCCTACCCGAATGTGCCAGTTGCGGAGGTTGTGGCT
GGGAGCGGCGAGCCTTATTTACCCAGCTACGAGGAGGCAACTAATGCTGA
CGGAGGGAGGGATCGAGGGAACGGGGTGCGGAGGCGGCAACCCTGGCAAG
GAGGTTTTACGTAAGAAGAAGTGCATATATATCTATGCATATATTCTTGT
ATATATCACAAGCATTGAGCCCGAGATTGCGGGGGAATGCACCGTGCGGG
ATGAGAGAAAAGTTTGTGCGGTACTTGATGCGGAGTGTACGTGTTGGGAT
GGCTGTGACACCGAAAGAAGGTAA back to topCoding sequence (CDS) from alignment at CM002456.1:142996..144919- >rna676 ID=rna676|Name=rna676|organism=Nannochloropsis gaditana|type=CDS|length=2943bp|location=Sequence derived from alignment at CM002456.1:142996..144919- (Nannochloropsis gaditana)
CATTGAGCCCGAGATTGCGGGGGAATGCACCGTGCGGGATGAGAGAAAAG
TTTGTGCGGTACTTGATGCGGAGTGTACGTGTTGGGATGGCTGTGACACC
GAAAGAAGGTAAACAACATGCTCTCCCTCCTCTACAAAGGCGCCACCCTC
GAACGCGCCCTCGGCTCCCTTCCCTTCCTCCGCCTCGTCTTCTTCGCTTG
GGGGGTCTCCCACACACTCATCCTGCTCCTGGCCACCTTCCTTCACTCCC
TCTCCTTTCCCTCCTCCTCCTTCTACAGCTGCTCCGTCGGCTTCTCGGCC
GTCCTCTTCGCCTTGAAGTACGTATCCTACGCGAGGGACCCCGACAGTTG
GACAACCGTTGCCGGCTTCCGGGTACCCTTAGGGAAAGCCTCCTGGGTGG
AGCTGGTCGTAACCTCCTTCTTGACTCCTAACGCGTCCTTTCTCGGGCAT
TTGTGCGGCATTTTGGCGGGAATTCTATGTACGGCCCGCCATACCGGCCA
CGCGGAAGACCATATCCACGTCAAGGACGCCGAAATAATGATTCGTATAT
CATTTACGTTCTTCTTTCTACCATATTTCGGTACATCAATGAGCTGGAAT
ACAAACCTCCAGTCACGATTGCCTTTTTAACGCTCAATATTATGGTCCAC
CTCATGCCTGAATTTTTCCTCCCATGGGGCTTCGACTTCCGGAGTGTCCG
CGACATTTGTCTACTGCCCGCACATATCCTCGAGCTTCTACCCTCCTTGT
CCTCCCTCTTTTCCAGCGTCCAGGGAGACACCTTGGGGCGGGGGCTCGGA
CGGGGAGGCAGAAACCGACCGCGCTCGGGCAATGTCTGGGCGGAGTTCAT
TCGGAATAATTTCTCCTCCTATCGCTCCTCCTCCGCCTGGTGGTCTCCCT
CCATGCATGACCGCTGGCGTGAAGCTGCATCTCGCATCTTTCTGTCCGCT
CTCGTCCACGGAGACGACGTGCACCTTTACTCATTGAGCCCGAGATTGCG
GGGGAATGCACCGTGCGGGATGAGAGAAAAGTTTGTGCGGTACTTGATGC
GGAGTGTACGTGTTGGGATGGCTGTGACACCGAAAGAAGGTAAACAACAT
GCTCTCCCTCCTCTACAAAGGCGCCACCCTCGAACGCGCCCTCGGCTCCC
TTCCCTTCCTCCGCCTCGTCTTCTTCGCTTGGGGGGTCTCCCACACACTC
ATCCTGCTCCTGGCCACCTTCCTTCACTCCCTCTCCTTTCCCTCCTCCTC
CTTCTACAGCTGCTCCGTCGGCTTCTCGGCCGTCCTCTTCGCCTTGAAGT
ACGTATCCTACGCGAGGGACCCCGACAGTTGGACAACCGTTGCCGGCTTC
CGGGTACCCTTAGGGAAAGCCTCCTGGGTGGAGCTGGTCGTAACCTCCTT
CTTGACTCCTAACGCGTCCTTTCTCGGGCATTTGTGCGGCATTTTGGCGG
GAATTCTATGTACGGCCCGCCATACCGGCCACGCGGAAGACCATATCCAC
GTCAAGGACGCCGAAATAATGATTCGTATATCATTTACGTTCTTCTTTCT
ACCATATTTCGGTACATCAATGAGCTGGAATACAAACCTCCAGTCACGAT
TGCCTTTTTAACGCTCAATATTATGGTCCACCTCATGCCTGAATTTTTCC
TCCCATGGGGCTTCGACTTCCGGAGTGTCCGCGACATTTGTCTACTGCCC
GCACATATCCTCGAGCTTCTACCCTCCTTGTCCTCCCTCTTTTCCAGCGT
CCAGGGAGACACCTTGGGGCGGGGGCTCGGACGGGGAGGCAGAAACCGAC
CGCGCTCGGGCAATGTCTGGGCGGAGTTCATTCGGAATAATTTCTCCTCC
TATCGCTCCTCCTCCGCCTGGTGGTCTCCCTCCATGCATGACCGCTGGCG
TGAAGCTGCATCTCGCATCTTTCTGTCCGCTCTCGTCCACGGAGACGACG
TGCACCTTTACTCATTGAGCCCGAGATTGCGGGGGAATGCACCGTGCGGG
ATGAGAGAAAAGTTTGTGCGGTACTTGATGCGGAGTGTACGTGTTGGGAT
GGCTGTGACACCGAAAGAAGGTAAACAACATGCTCTCCCTCCTCTACAAA
GGCGCCACCCTCGAACGCGCCCTCGGCTCCCTTCCCTTCCTCCGCCTCGT
CTTCTTCGCTTGGGGGGTCTCCCACACACTCATCCTGCTCCTGGCCACCT
TCCTTCACTCCCTCTCCTTTCCCTCCTCCTCCTTCTACAGCTGCTCCGTC
GGCTTCTCGGCCGTCCTCTTCGCCTTGAAGTACGTATCCTACGCGAGGGA
CCCCGACAGTTGGACAACCGTTGCCGGCTTCCGGGTACCCTTAGGGAAAG
CCTCCTGGGTGGAGCTGGTCGTAACCTCCTTCTTGACTCCTAACGCGTCC
TTTCTCGGGCATTTGTGCGGCATTTTGGCGGGAATTCTATGTACGGCCCG
CCATACCGGCCACGCGGAAGACCATATCCACGTCAAGGACGCCGAAATAA
TGATTCGTATATCATTTACGTTCTTCTTTCTACCATATTTCGGTACATCA
ATGAGCTGGAATACAAACCTCCAGTCACGATTGCCTTTTTAACGCTCAAT
ATTATGGTCCACCTCATGCCTGAATTTTTCCTCCCATGGGGCTTCGACTT
CCGGAGTGTCCGCGACATTTGTCTACTGCCCGCACATATCCTCGAGCTTC
TACCCTCCTTGTCCTCCCTCTTTTCCAGCGTCCAGGGAGACACCTTGGGG
CGGGGGCTCGGACGGGGAGGCAGAAACCGACCGCGCTCGGGCAATGTCTG
GGCGGAGTTCATTCGGAATAATTTCTCCTCCTATCGCTCCTCCTCCGCCT
GGTGGTCTCCCTCCATGCATGACCGCTGGCGTGAAGCTGCATCTCGCATC
TTTCTGTCCGCTCTCGTCCACGGAGACGACGTGCACCTTTACT back to top
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