EWM29995.1, cds676 (CDS) Nannochloropsis gaditana

Overview
NameEWM29995.1
Unique Namecds676
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002456.1:144344..144848 -
Alignment locationCM002456.1:143655..144018 -
Alignment locationCM002456.1:142996..143107 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM29995.1
Productrhomboid domain-containing protein 1
Orig transcript idgnl|cribi|Naga_100379g3.1018.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002456.1supercontigCM002456.1:144344..144848 -
CM002456.1supercontigCM002456.1:143655..144018 -
CM002456.1supercontigCM002456.1:142996..143107 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016787hydrolase activity
GO:0004252serine-type endopeptidase activity
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO:0016021integral component of membrane
Vocabulary: Biological Process
TermDefinition
GO:0019538protein metabolic process
Vocabulary: INTERPRO
TermDefinition
IPR022764Peptidase_S54_rhomboid_dom
Homology
BLAST of EWM29995.1 vs. NCBI_GenBank
Match: gi|585112605|gb|EWM29995.1| (rhomboid domain-containing protein 1 [Nannochloropsis gaditana])

HSP 1 Score: 663.685 bits (1711), Expect = 0.000e+0
Identity = 326/326 (100.00%), Postives = 326/326 (100.00%), Query Frame = 0
Query:    1 MYGPPYRPRGRPYPRQGRRNNDSYIIYVLLSTIFRYINELEYKPPVTIAFLTLNIMVHLMPEFFLPWGFDFRSVRDICLLPAHILELLPSLSSLFSSVQGDTLGRGLGRGGRNRPRSGNVWAEFIRNNFSSYRSSSAWWSPSMHDRWREAASRIFLSALVHGDDVHLYYNMLSLLYKGATLERALGSLPFLRLVFFAWGVSHTLILLLATFLHSLSFPSSSFYSCSVGFSAVLFALKYVSYARDPDSWTTVAGFRVPLGKASWVELVVTSFLTPNASFLGHLCGILAGILIEPEIAGECTVRDERKVCAVLDAECTCWDGCDTERR 326
            MYGPPYRPRGRPYPRQGRRNNDSYIIYVLLSTIFRYINELEYKPPVTIAFLTLNIMVHLMPEFFLPWGFDFRSVRDICLLPAHILELLPSLSSLFSSVQGDTLGRGLGRGGRNRPRSGNVWAEFIRNNFSSYRSSSAWWSPSMHDRWREAASRIFLSALVHGDDVHLYYNMLSLLYKGATLERALGSLPFLRLVFFAWGVSHTLILLLATFLHSLSFPSSSFYSCSVGFSAVLFALKYVSYARDPDSWTTVAGFRVPLGKASWVELVVTSFLTPNASFLGHLCGILAGILIEPEIAGECTVRDERKVCAVLDAECTCWDGCDTERR
Sbjct:    1 MYGPPYRPRGRPYPRQGRRNNDSYIIYVLLSTIFRYINELEYKPPVTIAFLTLNIMVHLMPEFFLPWGFDFRSVRDICLLPAHILELLPSLSSLFSSVQGDTLGRGLGRGGRNRPRSGNVWAEFIRNNFSSYRSSSAWWSPSMHDRWREAASRIFLSALVHGDDVHLYYNMLSLLYKGATLERALGSLPFLRLVFFAWGVSHTLILLLATFLHSLSFPSSSFYSCSVGFSAVLFALKYVSYARDPDSWTTVAGFRVPLGKASWVELVVTSFLTPNASFLGHLCGILAGILIEPEIAGECTVRDERKVCAVLDAECTCWDGCDTERR 326          
BLAST of EWM29995.1 vs. NCBI_GenBank
Match: gi|299471888|emb|CBN77058.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 135.191 bits (339), Expect = 8.070e-33
Identity = 99/277 (35.74%), Postives = 138/277 (49.82%), Query Frame = 0
Query:   28 VLLSTIFRYINELEYKPPVTIAFLTLNIMVHLMPEFF--------------LPWGFDFRSVRDICLLPAHILELLPSLSSLFSSVQGDTLGRGLGRGGRNRPRSGNVWAEFIRNNFSSYRSSSAWWSPSMHDRWREAASRIFLSALVHGDDVHLYYNMLSLLYKGATLERALGSLPFLRLVFFAWGVSHTLILLLATFLHSLSFPSSSFYSCSVGFSAVLFALKYVSYARDPDSWTTVAGFRVPLGKASWVELVVTSFLTPNASFLGHLCGILAGIL 290
            +L   +   I++L++KPP+T+A +     +HL P+ F              L  GFD   +R++C        LLP+  S+  + +                R+G V    IR                          R+ +S  VHGDD+HLYYNM S L KG +LE  +G+  F  L+ F+   S TL++L A  L  +    S  ++C+VGFS VLFALKYV   R P   T+V GF V    A+W+ELV+ S + PNASFLGHLCGILAG+L
Sbjct:   38 ILALRLVHQISQLQHKPPLTLALMAGMSALHLKPDIFKDLFGRKGVFEWSWLTGGFDH--IRNVC--------LLPA--SILDTYE----------------RTGEVE---IR--------------------------RLLMSPFVHGDDMHLYYNMASFLLKGVSLELTMGTQAFAGLLSFSLLASQTLMMLSAWVLLVVFDVPSPMHACAVGFSGVLFALKYVLSRRSP-GVTSVMGFSVHTRYATWLELVLISVMVPNASFLGHLCGILAGVL 256          
BLAST of EWM29995.1 vs. NCBI_GenBank
Match: gi|1072956007|ref|XP_018488900.1| (PREDICTED: rhomboid-like protein 14, mitochondrial [Raphanus sativus])

HSP 1 Score: 130.183 bits (326), Expect = 1.389e-31
Identity = 74/140 (52.86%), Postives = 91/140 (65.00%), Query Frame = 0
Query:  152 SRIFLSALVHGDDVHLYYNMLSLLYKGATLERALGSLPFLRLVFFAWGVSHTLILLLATFLHSLSFPSSSFYS-CSVGFSAVLFALKYVSYARDPDSWTTVAGFRVPLGKASWVELVVTSFLTPNASFLGHLCGILAGIL 290
             R+FLS   H D+ HL YNM+SLL+KG  LE ++GS  F  +VF   G+S  + LLLA  LH +     +FY+  SVGFS VLFALK V  ARD D +T+V G  VP   A+W ELV+     P+ASFLGHL GILAGIL
Sbjct:   78 KRLFLSPFYHLDEPHLVYNMMSLLWKGIKLETSMGSTEFASMVFTLLGISQGVTLLLAKSLHVIFDYERAFYNEYSVGFSGVLFALKVVLNARDEDYYTSVYGILVPTKYAAWAELVLVQMFMPSASFLGHLGGILAGIL 217          
BLAST of EWM29995.1 vs. NCBI_GenBank
Match: gi|662218830|ref|XP_008483463.1| (PREDICTED: rhomboid-related protein 4-like [Diaphorina citri])

HSP 1 Score: 128.257 bits (321), Expect = 2.238e-31
Identity = 66/162 (40.74%), Postives = 94/162 (58.02%), Query Frame = 0
Query:  152 SRIFLSALVHGDDVHLYYNMLSLLYKGATLERALGSLPFLRLVFFAWGVSHTLILLLATFLHSLSFPSSSFYSCSVGFSAVLFALKYVSYARDPDSWTTVAGFRVPLGKASWVELVVTSFLTPNASFLGHLCGILAGILIEPEIAGECTVRDERKVCAVLDA 313
             R+ LSAL HGDD+HLYYNM+SL+ KG  LER  GS+ F+ LV F    +    ++L+  ++ ++   +  Y C++GFSAVLF++K +   + PD    +  F VP   A W+ELV+   + PNASF GHL GIL G+       G    R  R V  V++ 
Sbjct:   70 KRLVLSALEHGDDMHLYYNMVSLIVKGRELERMFGSVQFVVLVSFLIISTSVCYVMLSYVIYLMNHDVTELYQCAIGFSAVLFSMKTIRTRQSPDVTHQLLNFSVPAVYAPWIELVIIHLMVPNASFKGHLSGILVGLCYTETSLGRLVERSGRSVSRVVNT 231          
BLAST of EWM29995.1 vs. NCBI_GenBank
Match: gi|325180697|emb|CCA15102.1| (serine protease family S54 putative [Albugo laibachii Nc14])

HSP 1 Score: 127.872 bits (320), Expect = 4.445e-31
Identity = 66/141 (46.81%), Postives = 92/141 (65.25%), Query Frame = 0
Query:  148 REAASRIFLSALVHGDDVHLYYNMLSLLYKGATLERALGSLPFLRLVFFAWGVSHTLILLLATFLHSLSFPSSSFYSCSVGFSAVLFALKYVSYARDPDSWTTVAGFRVPLGKASWVELVVTSFLTPNASFLGHLCGILAG 288
            R    R+  SA  HGDD+HLY+NM+S L+KG  LE  +GS  F  L+ +   VSH LI+L +  +  L     ++  CS+GFSAVLF LK V  ++ P++ + + GF+VP   A+W+ELV+   L P+ASFLGHLCGI+AG
Sbjct:   73 RHEWERLIGSAFFHGDDIHLYHNMVSFLWKGYQLESKMGSYHFACLLIYLLLVSHGLIVLASYLIFKLQHNPHAWTQCSLGFSAVLFGLKVVLNSKSPNT-SNIYGFQVPTKYAAWLELVLIHVLVPDASFLGHLCGIVAG 212          
BLAST of EWM29995.1 vs. NCBI_GenBank
Match: gi|923896841|ref|XP_013719074.1| (PREDICTED: rhomboid-like protein 14, mitochondrial, partial [Brassica napus])

HSP 1 Score: 126.716 bits (317), Expect = 1.629e-30
Identity = 76/157 (48.41%), Postives = 100/157 (63.69%), Query Frame = 0
Query:  135 SSAWWSPSMHDRWREAASRIFLSALVHGDDVHLYYNMLSLLYKGATLERALGSLPFLRLVFFAWGVSHTLILLLATFLHSLSFPSSSFYS-CSVGFSAVLFALKYVSYARDPDSWTTVAGFRVPLGKASWVELVVTSFLTPNASFLGHLCGILAGIL 290
            S  W++P++  + ++   R FLSA  H ++ HL YNM+SLL+KG  LE ++GS  F  +VF   G+S  + LLLA  LH       +FYS  SVGFS V+FALK V  +RD D +T+V G  VP   A+W ELV+     P+ASFLGHL GILAGIL
Sbjct:   30 SEVWFNPNLILKHKDL-KRFFLSAFYHLNEPHLVYNMMSLLWKGIKLETSMGSSEFASMVFALLGMSQGVTLLLAKSLHVFFDYERAFYSEYSVGFSGVIFALKVVLNSRDED-YTSVYGILVPTKYAAWAELVLVQMFMPSASFLGHLGGILAGIL 184          
BLAST of EWM29995.1 vs. NCBI_GenBank
Match: gi|1101367507|ref|XP_018915034.1| (PREDICTED: rhomboid-related protein 4-like [Bemisia tabaci])

HSP 1 Score: 123.25 bits (308), Expect = 6.103e-30
Identity = 65/145 (44.83%), Postives = 87/145 (60.00%), Query Frame = 0
Query:  153 RIFLSALVHGDDVHLYYNMLSLLYKGATLERALGSLPFLRLVFFAWGVSHTLILLLATFLHSLSFPSSSFYSCSVGFSAVLFALKYVSYARDPDSWTTVAGFRVPLGKASWVELVVTSFLTPNASFLGHLCGILAGILIEPEIAG 297
            R+  S   HGDD+HLYYNM+S + KG TLE   GS  F  L+ F   ++    ++LA     +        SC++GFS VLFALK V+   DP  +T VAGF VP+  A+W EL+  + L PN+SFLGHL GI+AG++    I G
Sbjct:   74 RLLWSTFEHGDDMHLYYNMISFMVKGRTLEGKYGSANFGFLLAFLCAITSCSYVVLALIGAQIMDDPYIMKSCAIGFSGVLFALKVVTTQEDPRGYTNVAGFLVPVKYAAWAELLAINMLVPNSSFLGHLAGIVAGLIYTKTIIG 218          
BLAST of EWM29995.1 vs. NCBI_GenBank
Match: gi|635370128|emb|CCI41808.1| (unnamed protein product [Albugo candida])

HSP 1 Score: 124.02 bits (310), Expect = 6.596e-30
Identity = 68/148 (45.95%), Postives = 95/148 (64.19%), Query Frame = 0
Query:  141 PSMHDRWREAASRIFLSALVHGDDVHLYYNMLSLLYKGATLERALGSLPFLRLVFFAWGVSHTLILLLATFLHSLSFPSSSFYSCSVGFSAVLFALKYVSYARDPDSWTTVAGFRVPLGKASWVELVVTSFLTPNASFLGHLCGILAG 288
            P++  R RE   R+  +A  HGDD+HLY+NM+S L+KG  LE  +GS  F  ++ +   VSH LI+L +  +        ++  CS+GFSAVLF LK V  +  P++ T++ GF VP   A+W+ELV+   L PNASFLGHLCGI+AG
Sbjct:   38 PNLIARRREW-ERLIGAAFFHGDDIHLYHNMVSFLWKGYQLESKMGSYRFACVLAYLLLVSHGLIVLTSYLILKYQHNPHAWTQCSLGFSAVLFGLKVVLNSESPNT-TSIYGFHVPTKYAAWLELVLIHVLVPNASFLGHLCGIVAG 183          
BLAST of EWM29995.1 vs. NCBI_GenBank
Match: gi|674941171|emb|CDX92143.1| (BnaA05g22640D [Brassica napus])

HSP 1 Score: 125.561 bits (314), Expect = 6.681e-30
Identity = 75/157 (47.77%), Postives = 99/157 (63.06%), Query Frame = 0
Query:  135 SSAWWSPSMHDRWREAASRIFLSALVHGDDVHLYYNMLSLLYKGATLERALGSLPFLRLVFFAWGVSHTLILLLATFLHSLSFPSSSFYS-CSVGFSAVLFALKYVSYARDPDSWTTVAGFRVPLGKASWVELVVTSFLTPNASFLGHLCGILAGIL 290
            +  W++P++  + ++   R FLS   H D+ HL YNM+SLL+KG  LE ++GS  F  +VF   G+S  + LLLA  LH       +FYS  SVGFS V+FALK V  +RD D +T+V G  VP   A+W ELV+     P+ASFLGHL GILAGIL
Sbjct:   62 NEVWFNPNLILKHKDL-KRFFLSPFYHLDEPHLVYNMMSLLWKGIKLETSMGSSEFASMVFALLGMSQGVTLLLAKSLHVFFDYERAFYSEYSVGFSGVIFALKVVLNSRDED-YTSVYGILVPTKYAAWAELVLVQMFMPSASFLGHLGGILAGIL 216          
BLAST of EWM29995.1 vs. NCBI_GenBank
Match: gi|685310831|ref|XP_009145998.1| (PREDICTED: rhomboid-like protein 14, mitochondrial [Brassica rapa])

HSP 1 Score: 125.176 bits (313), Expect = 9.600e-30
Identity = 75/157 (47.77%), Postives = 99/157 (63.06%), Query Frame = 0
Query:  135 SSAWWSPSMHDRWREAASRIFLSALVHGDDVHLYYNMLSLLYKGATLERALGSLPFLRLVFFAWGVSHTLILLLATFLHSLSFPSSSFYS-CSVGFSAVLFALKYVSYARDPDSWTTVAGFRVPLGKASWVELVVTSFLTPNASFLGHLCGILAGIL 290
            +  W++P++  + ++   R FLS   H D+ HL YNM+SLL+KG  LE ++GS  F  +VF   G+S  + LLLA  LH       +FYS  SVGFS V+FALK V  +RD D +T+V G  VP   A+W ELV+     P+ASFLGHL GILAGIL
Sbjct:   62 NEVWFNPNLILKHKDL-KRFFLSPFYHLDEPHLVYNMMSLLWKGIKLETSMGSSEFASMVFALLGMSQGVTLLLAKSLHVFFDYERAFYSEYSVGFSGVIFALKVVLNSRDED-YTSVYGILVPTKYAAWAELVLVQMFMPSASFLGHLGGILAGIL 216          
The following BLAST results are available for this feature:
BLAST of EWM29995.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585112605|gb|EWM29995.1|0.000e+0100.00rhomboid domain-containing protein 1 [Nannochlorop... [more]
gi|299471888|emb|CBN77058.1|8.070e-3335.74conserved unknown protein [Ectocarpus siliculosus][more]
gi|1072956007|ref|XP_018488900.1|1.389e-3152.86PREDICTED: rhomboid-like protein 14, mitochondrial... [more]
gi|662218830|ref|XP_008483463.1|2.238e-3140.74PREDICTED: rhomboid-related protein 4-like [Diapho... [more]
gi|325180697|emb|CCA15102.1|4.445e-3146.81serine protease family S54 putative [Albugo laibac... [more]
gi|923896841|ref|XP_013719074.1|1.629e-3048.41PREDICTED: rhomboid-like protein 14, mitochondrial... [more]
gi|1101367507|ref|XP_018915034.1|6.103e-3044.83PREDICTED: rhomboid-related protein 4-like [Bemisi... [more]
gi|635370128|emb|CCI41808.1|6.596e-3045.95unnamed protein product [Albugo candida][more]
gi|674941171|emb|CDX92143.1|6.681e-3047.77BnaA05g22640D [Brassica napus][more]
gi|685310831|ref|XP_009145998.1|9.600e-3047.77PREDICTED: rhomboid-like protein 14, mitochondrial... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna676rna676Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications