EWM29995.1, cds676 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM29995.1 vs. NCBI_GenBank
Match: gi|585112605|gb|EWM29995.1| (rhomboid domain-containing protein 1 [Nannochloropsis gaditana]) HSP 1 Score: 663.685 bits (1711), Expect = 0.000e+0 Identity = 326/326 (100.00%), Postives = 326/326 (100.00%), Query Frame = 0 Query: 1 MYGPPYRPRGRPYPRQGRRNNDSYIIYVLLSTIFRYINELEYKPPVTIAFLTLNIMVHLMPEFFLPWGFDFRSVRDICLLPAHILELLPSLSSLFSSVQGDTLGRGLGRGGRNRPRSGNVWAEFIRNNFSSYRSSSAWWSPSMHDRWREAASRIFLSALVHGDDVHLYYNMLSLLYKGATLERALGSLPFLRLVFFAWGVSHTLILLLATFLHSLSFPSSSFYSCSVGFSAVLFALKYVSYARDPDSWTTVAGFRVPLGKASWVELVVTSFLTPNASFLGHLCGILAGILIEPEIAGECTVRDERKVCAVLDAECTCWDGCDTERR 326 MYGPPYRPRGRPYPRQGRRNNDSYIIYVLLSTIFRYINELEYKPPVTIAFLTLNIMVHLMPEFFLPWGFDFRSVRDICLLPAHILELLPSLSSLFSSVQGDTLGRGLGRGGRNRPRSGNVWAEFIRNNFSSYRSSSAWWSPSMHDRWREAASRIFLSALVHGDDVHLYYNMLSLLYKGATLERALGSLPFLRLVFFAWGVSHTLILLLATFLHSLSFPSSSFYSCSVGFSAVLFALKYVSYARDPDSWTTVAGFRVPLGKASWVELVVTSFLTPNASFLGHLCGILAGILIEPEIAGECTVRDERKVCAVLDAECTCWDGCDTERR Sbjct: 1 MYGPPYRPRGRPYPRQGRRNNDSYIIYVLLSTIFRYINELEYKPPVTIAFLTLNIMVHLMPEFFLPWGFDFRSVRDICLLPAHILELLPSLSSLFSSVQGDTLGRGLGRGGRNRPRSGNVWAEFIRNNFSSYRSSSAWWSPSMHDRWREAASRIFLSALVHGDDVHLYYNMLSLLYKGATLERALGSLPFLRLVFFAWGVSHTLILLLATFLHSLSFPSSSFYSCSVGFSAVLFALKYVSYARDPDSWTTVAGFRVPLGKASWVELVVTSFLTPNASFLGHLCGILAGILIEPEIAGECTVRDERKVCAVLDAECTCWDGCDTERR 326
BLAST of EWM29995.1 vs. NCBI_GenBank
Match: gi|299471888|emb|CBN77058.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 135.191 bits (339), Expect = 8.070e-33 Identity = 99/277 (35.74%), Postives = 138/277 (49.82%), Query Frame = 0 Query: 28 VLLSTIFRYINELEYKPPVTIAFLTLNIMVHLMPEFF--------------LPWGFDFRSVRDICLLPAHILELLPSLSSLFSSVQGDTLGRGLGRGGRNRPRSGNVWAEFIRNNFSSYRSSSAWWSPSMHDRWREAASRIFLSALVHGDDVHLYYNMLSLLYKGATLERALGSLPFLRLVFFAWGVSHTLILLLATFLHSLSFPSSSFYSCSVGFSAVLFALKYVSYARDPDSWTTVAGFRVPLGKASWVELVVTSFLTPNASFLGHLCGILAGIL 290 +L + I++L++KPP+T+A + +HL P+ F L GFD +R++C LLP+ S+ + + R+G V IR R+ +S VHGDD+HLYYNM S L KG +LE +G+ F L+ F+ S TL++L A L + S ++C+VGFS VLFALKYV R P T+V GF V A+W+ELV+ S + PNASFLGHLCGILAG+L Sbjct: 38 ILALRLVHQISQLQHKPPLTLALMAGMSALHLKPDIFKDLFGRKGVFEWSWLTGGFDH--IRNVC--------LLPA--SILDTYE----------------RTGEVE---IR--------------------------RLLMSPFVHGDDMHLYYNMASFLLKGVSLELTMGTQAFAGLLSFSLLASQTLMMLSAWVLLVVFDVPSPMHACAVGFSGVLFALKYVLSRRSP-GVTSVMGFSVHTRYATWLELVLISVMVPNASFLGHLCGILAGVL 256
BLAST of EWM29995.1 vs. NCBI_GenBank
Match: gi|1072956007|ref|XP_018488900.1| (PREDICTED: rhomboid-like protein 14, mitochondrial [Raphanus sativus]) HSP 1 Score: 130.183 bits (326), Expect = 1.389e-31 Identity = 74/140 (52.86%), Postives = 91/140 (65.00%), Query Frame = 0 Query: 152 SRIFLSALVHGDDVHLYYNMLSLLYKGATLERALGSLPFLRLVFFAWGVSHTLILLLATFLHSLSFPSSSFYS-CSVGFSAVLFALKYVSYARDPDSWTTVAGFRVPLGKASWVELVVTSFLTPNASFLGHLCGILAGIL 290 R+FLS H D+ HL YNM+SLL+KG LE ++GS F +VF G+S + LLLA LH + +FY+ SVGFS VLFALK V ARD D +T+V G VP A+W ELV+ P+ASFLGHL GILAGIL Sbjct: 78 KRLFLSPFYHLDEPHLVYNMMSLLWKGIKLETSMGSTEFASMVFTLLGISQGVTLLLAKSLHVIFDYERAFYNEYSVGFSGVLFALKVVLNARDEDYYTSVYGILVPTKYAAWAELVLVQMFMPSASFLGHLGGILAGIL 217
BLAST of EWM29995.1 vs. NCBI_GenBank
Match: gi|662218830|ref|XP_008483463.1| (PREDICTED: rhomboid-related protein 4-like [Diaphorina citri]) HSP 1 Score: 128.257 bits (321), Expect = 2.238e-31 Identity = 66/162 (40.74%), Postives = 94/162 (58.02%), Query Frame = 0 Query: 152 SRIFLSALVHGDDVHLYYNMLSLLYKGATLERALGSLPFLRLVFFAWGVSHTLILLLATFLHSLSFPSSSFYSCSVGFSAVLFALKYVSYARDPDSWTTVAGFRVPLGKASWVELVVTSFLTPNASFLGHLCGILAGILIEPEIAGECTVRDERKVCAVLDA 313 R+ LSAL HGDD+HLYYNM+SL+ KG LER GS+ F+ LV F + ++L+ ++ ++ + Y C++GFSAVLF++K + + PD + F VP A W+ELV+ + PNASF GHL GIL G+ G R R V V++ Sbjct: 70 KRLVLSALEHGDDMHLYYNMVSLIVKGRELERMFGSVQFVVLVSFLIISTSVCYVMLSYVIYLMNHDVTELYQCAIGFSAVLFSMKTIRTRQSPDVTHQLLNFSVPAVYAPWIELVIIHLMVPNASFKGHLSGILVGLCYTETSLGRLVERSGRSVSRVVNT 231
BLAST of EWM29995.1 vs. NCBI_GenBank
Match: gi|325180697|emb|CCA15102.1| (serine protease family S54 putative [Albugo laibachii Nc14]) HSP 1 Score: 127.872 bits (320), Expect = 4.445e-31 Identity = 66/141 (46.81%), Postives = 92/141 (65.25%), Query Frame = 0 Query: 148 REAASRIFLSALVHGDDVHLYYNMLSLLYKGATLERALGSLPFLRLVFFAWGVSHTLILLLATFLHSLSFPSSSFYSCSVGFSAVLFALKYVSYARDPDSWTTVAGFRVPLGKASWVELVVTSFLTPNASFLGHLCGILAG 288 R R+ SA HGDD+HLY+NM+S L+KG LE +GS F L+ + VSH LI+L + + L ++ CS+GFSAVLF LK V ++ P++ + + GF+VP A+W+ELV+ L P+ASFLGHLCGI+AG Sbjct: 73 RHEWERLIGSAFFHGDDIHLYHNMVSFLWKGYQLESKMGSYHFACLLIYLLLVSHGLIVLASYLIFKLQHNPHAWTQCSLGFSAVLFGLKVVLNSKSPNT-SNIYGFQVPTKYAAWLELVLIHVLVPDASFLGHLCGIVAG 212
BLAST of EWM29995.1 vs. NCBI_GenBank
Match: gi|923896841|ref|XP_013719074.1| (PREDICTED: rhomboid-like protein 14, mitochondrial, partial [Brassica napus]) HSP 1 Score: 126.716 bits (317), Expect = 1.629e-30 Identity = 76/157 (48.41%), Postives = 100/157 (63.69%), Query Frame = 0 Query: 135 SSAWWSPSMHDRWREAASRIFLSALVHGDDVHLYYNMLSLLYKGATLERALGSLPFLRLVFFAWGVSHTLILLLATFLHSLSFPSSSFYS-CSVGFSAVLFALKYVSYARDPDSWTTVAGFRVPLGKASWVELVVTSFLTPNASFLGHLCGILAGIL 290 S W++P++ + ++ R FLSA H ++ HL YNM+SLL+KG LE ++GS F +VF G+S + LLLA LH +FYS SVGFS V+FALK V +RD D +T+V G VP A+W ELV+ P+ASFLGHL GILAGIL Sbjct: 30 SEVWFNPNLILKHKDL-KRFFLSAFYHLNEPHLVYNMMSLLWKGIKLETSMGSSEFASMVFALLGMSQGVTLLLAKSLHVFFDYERAFYSEYSVGFSGVIFALKVVLNSRDED-YTSVYGILVPTKYAAWAELVLVQMFMPSASFLGHLGGILAGIL 184
BLAST of EWM29995.1 vs. NCBI_GenBank
Match: gi|1101367507|ref|XP_018915034.1| (PREDICTED: rhomboid-related protein 4-like [Bemisia tabaci]) HSP 1 Score: 123.25 bits (308), Expect = 6.103e-30 Identity = 65/145 (44.83%), Postives = 87/145 (60.00%), Query Frame = 0 Query: 153 RIFLSALVHGDDVHLYYNMLSLLYKGATLERALGSLPFLRLVFFAWGVSHTLILLLATFLHSLSFPSSSFYSCSVGFSAVLFALKYVSYARDPDSWTTVAGFRVPLGKASWVELVVTSFLTPNASFLGHLCGILAGILIEPEIAG 297 R+ S HGDD+HLYYNM+S + KG TLE GS F L+ F ++ ++LA + SC++GFS VLFALK V+ DP +T VAGF VP+ A+W EL+ + L PN+SFLGHL GI+AG++ I G Sbjct: 74 RLLWSTFEHGDDMHLYYNMISFMVKGRTLEGKYGSANFGFLLAFLCAITSCSYVVLALIGAQIMDDPYIMKSCAIGFSGVLFALKVVTTQEDPRGYTNVAGFLVPVKYAAWAELLAINMLVPNSSFLGHLAGIVAGLIYTKTIIG 218
BLAST of EWM29995.1 vs. NCBI_GenBank
Match: gi|635370128|emb|CCI41808.1| (unnamed protein product [Albugo candida]) HSP 1 Score: 124.02 bits (310), Expect = 6.596e-30 Identity = 68/148 (45.95%), Postives = 95/148 (64.19%), Query Frame = 0 Query: 141 PSMHDRWREAASRIFLSALVHGDDVHLYYNMLSLLYKGATLERALGSLPFLRLVFFAWGVSHTLILLLATFLHSLSFPSSSFYSCSVGFSAVLFALKYVSYARDPDSWTTVAGFRVPLGKASWVELVVTSFLTPNASFLGHLCGILAG 288 P++ R RE R+ +A HGDD+HLY+NM+S L+KG LE +GS F ++ + VSH LI+L + + ++ CS+GFSAVLF LK V + P++ T++ GF VP A+W+ELV+ L PNASFLGHLCGI+AG Sbjct: 38 PNLIARRREW-ERLIGAAFFHGDDIHLYHNMVSFLWKGYQLESKMGSYRFACVLAYLLLVSHGLIVLTSYLILKYQHNPHAWTQCSLGFSAVLFGLKVVLNSESPNT-TSIYGFHVPTKYAAWLELVLIHVLVPNASFLGHLCGIVAG 183
BLAST of EWM29995.1 vs. NCBI_GenBank
Match: gi|674941171|emb|CDX92143.1| (BnaA05g22640D [Brassica napus]) HSP 1 Score: 125.561 bits (314), Expect = 6.681e-30 Identity = 75/157 (47.77%), Postives = 99/157 (63.06%), Query Frame = 0 Query: 135 SSAWWSPSMHDRWREAASRIFLSALVHGDDVHLYYNMLSLLYKGATLERALGSLPFLRLVFFAWGVSHTLILLLATFLHSLSFPSSSFYS-CSVGFSAVLFALKYVSYARDPDSWTTVAGFRVPLGKASWVELVVTSFLTPNASFLGHLCGILAGIL 290 + W++P++ + ++ R FLS H D+ HL YNM+SLL+KG LE ++GS F +VF G+S + LLLA LH +FYS SVGFS V+FALK V +RD D +T+V G VP A+W ELV+ P+ASFLGHL GILAGIL Sbjct: 62 NEVWFNPNLILKHKDL-KRFFLSPFYHLDEPHLVYNMMSLLWKGIKLETSMGSSEFASMVFALLGMSQGVTLLLAKSLHVFFDYERAFYSEYSVGFSGVIFALKVVLNSRDED-YTSVYGILVPTKYAAWAELVLVQMFMPSASFLGHLGGILAGIL 216
BLAST of EWM29995.1 vs. NCBI_GenBank
Match: gi|685310831|ref|XP_009145998.1| (PREDICTED: rhomboid-like protein 14, mitochondrial [Brassica rapa]) HSP 1 Score: 125.176 bits (313), Expect = 9.600e-30 Identity = 75/157 (47.77%), Postives = 99/157 (63.06%), Query Frame = 0 Query: 135 SSAWWSPSMHDRWREAASRIFLSALVHGDDVHLYYNMLSLLYKGATLERALGSLPFLRLVFFAWGVSHTLILLLATFLHSLSFPSSSFYS-CSVGFSAVLFALKYVSYARDPDSWTTVAGFRVPLGKASWVELVVTSFLTPNASFLGHLCGILAGIL 290 + W++P++ + ++ R FLS H D+ HL YNM+SLL+KG LE ++GS F +VF G+S + LLLA LH +FYS SVGFS V+FALK V +RD D +T+V G VP A+W ELV+ P+ASFLGHL GILAGIL Sbjct: 62 NEVWFNPNLILKHKDL-KRFFLSPFYHLDEPHLVYNMMSLLWKGIKLETSMGSSEFASMVFALLGMSQGVTLLLAKSLHVFFDYERAFYSEYSVGFSGVIFALKVVLNSRDED-YTSVYGILVPTKYAAWAELVLVQMFMPSASFLGHLGGILAGIL 216 The following BLAST results are available for this feature:
BLAST of EWM29995.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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