rna6759, rna6759 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna6759
Unique Name	rna6759
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1221
Alignment location	CM002469.1:436621..439088 +

Link to JBrowse

Properties


Property Name	Value
Product	d-lactate dehydrogenase
Orig transcript id	gnl\|cribi\|Naga_100082g16.9365.mrna
Orig protein id	gnl\|cribi\|Naga_100082g16.9365
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002469.1	supercontig	CM002469.1:436621..439088 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100082g16	gene6534	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna6759	rna6759-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM23933.1	cds6743	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002469.1:436621..439088+
coding sequence from alignment at CM002469.1:436621..439088+

mRNA sequence

>rna6759 ID=rna6759|Name=rna6759|organism=Nannochloropsis gaditana|type=mRNA|length=1221bp
GCGCAGGCCGGACATAACGCTACATGTAACTTACTAATTGAATGCTTAAC
ACTTCTATGAATCCTGTTCAGCATGTCACCAGGGTCCTCCGCCAAGCCTC
TCGAGCTGCTCTTCGTCTTCCTTTTAGGTGCAGCTGTAGCCTGGTCTTTG
CTGGCGGGTCGTTCGTCGTCACGAGGGGTAACACACAAGCGAAAAGCACA
TGACCCTACTTGTCGGCAAGAAGATGAAGAGGACGATGTCCAGGAGGTGA
AGTCGGGGTTTTTGGCTTATCTTCCATCCCCTGTGGGCCCATTGCTGCCC
CTGAGACATGGCGTCAGTGCCACGCCACTTGAAGAGCCCCAAGGACTAGG
CAAAGAGACTATGGGACCGTTACTAGAAAGCTTAGAGCAACCTGTGAAGG
CGCCGCGGCAGTCGACTTCGGGTCCTTTGACGTTGGGCGTGGCCGGCGGT
TCGGGGTCAGGCAAGACGACATTCGCTCGAGCCTTGTACGAGGCCCTTGG
CGAGGAGCATGTCACCTACATCACGCACGACTCATACTATAAAGATTTGA
GTCATCTCCCTTTCGACGAGCGTAAGAAATCGAATTTCGACCATCCCAAC
GCCCTGGACACCGCTCTGTTAGTTGAGCATCTGCGGGCACTGAAAAGGGG
CCACACAGTCGAAGTTCCTGAGTACGACTTCGCGACCCACAATCGTCTTA
AGCGGACCTGCAAGGCAGAGCCTCGGCCCGTCATTTTGCTTGAGGGTATT
CTTATTTTTGCGGACCGCTCTCTCGTCCAAGAGCTGGCCATTAAGGTCTT
TGTGGACACAGAGTCGGACCTGCGACTGATCCGGCGCATCCATCGGGACG
TGAAGGAACGTGGACGGAGTCTGGAATCCATAGTCGATCAATACGTAAAG
ACAGTGCGGCCCATGCACTTGGAGTTTGTGGAGCCTTCGAAACGGGAGGC
GGATGTCATCATCCCACTGGGTATGAACCAAGTTGCCTTAGACATGTTTC
TTAGCCGCCTTCAGGCCGAGGTAGGGGAACACTTGGGCCATCTCGGGTCT
TCAACTTCGCCTGATAAGGATTCTCAAAGCCCCAAAAGAAAAGCTTACAT
CGCATTAGGAAAGCAAGGTTCGTTATCGCTCGGGAACAACATGGGTCCGG
CAAGGACAAGAGGGGAAAGTGAGGCCAAAAATGCAAATTTAAGTCATTTG
AAAGTATTTGGATCCAAATAA

protein sequence of rna6759

>rna6759-protein ID=rna6759-protein|Name=rna6759|organism=Nannochloropsis gaditana|type=polypeptide|length=597bp
MRGWMRIGRRDAASIWTLYASGCCRRLTSSHGSRFMSFTEKKGPQGWTGT
GTLCRCESHRSRQLRHPASSILLSHGHCILAIAAGLAVVAQNGGVSNESR
GRDTLCEASLEASPEQQSRDAGVNQGDLPYDFVVALRDIVGPEYVSQDSE
ERALHGKPWSSYHKITQIPDVIVQPASTEQVSRIMRLCWLYRIPVVPYGG
ATSLEGHTLAPSRGLSLDMNRMNRILRVSIEDLDATVEAGLGYLDLNEAL
RDQGAHFPLDPGPGASIGGMCACRCSGSTAVKYGTMRDSVLSVTAVLADG
TVLKTGSRARKSAAGYDLTRLLIGSEGTLGIVTEVTLRLRRKPKRSAAIR
VCFPSVREAAAAASATLQAGVEVGRCELMDDHMVRIMNEMNGLRDTEATT
LLYEVVGISDVDVEGQMSLVEHVARKHGGYGILHSKDEADAVDMWRARKE
ALWAAQAAYPDREVMITDVCVPLSKLPDLIGQSKDKIRASSLPSPLVAHA
GDGNFHAFIIFRPDRPEEVEEAKGLSAFMVKSALALDGTCTGEHGIGVGK
IKYLEKEFGTGALQTMAAIKRALDPYNLLNPGKVLPQSLVPAQEYFR

mRNA from alignment at CM002469.1:436621..439088+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna6759 ID=rna6759|Name=rna6759|organism=Nannochloropsis gaditana|type=mRNA|length=2468bp|location=Sequence derived from alignment at CM002469.1:436621..439088+ (Nannochloropsis gaditana)
CGCGTCGCCCTGTCACATGTCGTAGCGTTCCCACATGGAGGCCCTTGAAG
CAAAAGCATGTGTTTTCCTACCCGTGACCATCCTAAGGCAAGGCCAGTGA
TTTGGTGTGTTGCGCCCGTATTCGTGTGTCTACCCACCCTGATTCCAGCT
TTTGTTCATCTCCCGGTATGTTATCCTTTCAGCTGAAAGCGGACGTGTCA
GCGACTGCAACAAAAGGAATCGACTCGATCCATCGCAAATATGAGGGGTT
GGATGCGCATTGGTAGGCGTGATGCGGCGTCTATTTGGACTTTATACGCT
TCAGGCTGCTGCAGGAGGTTGACAAGCTCCCACGGGTCACGATTCATGAG
TTTCACTGAGAAAAAAGGGCCTCAGGGCTGGACCGGGACGGGTACCCTTT
GTAGATGTGAATCGCACCGTAGTCGCCAGCTTCGACATCCTGCTTCCTCG
ATTTTGCTGTCCCACGGTCACTGCATCCTAGCAATCGCAGCAGGACTCGC
CGTGGTTGCGCAAAACGGCGGTGTCAGCAATGAAAGCCGTGGTCGGGACA
CCCTTTGTGAGGCCTCTCTCGAGGCTTCCCCCGAGCAGCAGTCAAGAGAT
GCAGGAGTCAATCAAGGTGACCTCCCGTACGATTTCGTGGTTGCCCTTCG
AGATATTGTGGGTCCAGAATATGTGTCCCAAGATTCAGAGGAACGCGCAC
TCCACGGAAAGCCGTGGAGCTCGTACCACAAGATCACCCAGATTCCCGAC
GTCATAGTGCAGCCTGCGTCCACGGAACAAGTATCACGCATCATGCGTCT
ATGCTGGTACGAAAATGATTGAATCATTGACAAACGACGTTTTTGAGAAG
GCAGAATTTTGAGTTCGATTGATACTTTAAAATCTGAAGTCGCGATGTGC
CAGTTTTGCGAAGTCGATTTCACTCCTCCACCCATCCATGTACTGTCAGG
TTGTATCGCATTCCTGTCGTACCCTACGGAGGCGCTACCTCACTTGAAGG
CCATACATTGGCGCCTTCCCGGGGTTTGTCTTTGGACATGAACCGCATGA
ACCGCATCCTGCGAGTGTCCATCGAGGATCTTGACGCCACCGTAGAGGCC
GGCCTGGGCTACTTGGATCTAAACGAGGCCCTGCGCGACCAGGGCGCACA
CTTTCCCCTAGACCCGGGGCCAGGGGCATCCATCGGCGGCATGTGTGCAT
GTCGATGTTCTGGCTCAACCGCTGTCAAGTATGGCACGATGCGCGACAGC
GTGCTGAGCGTGACGGCGGTGCTGGCCGACGGGACAGTCCTGAAGACGGG
CTCGAGGGCGCGCAAGTCTGCGGCAGGTTACGACCTGACGCGCCTACTGA
TTGGAAGCGAGGGAACCCTTGGCATCGTCACCGAAGTCACCCTGCGCTTG
CGTCGTAAGCCCAAGCGGTCTGCGGCCATTCGCGTCTGTTTCCCCTCCGT
TcgcgaggcggcggcggctgccagCGCCACCCTGCAGGCTGGGGTCGAGG
TCGGGCGTTGTGAGCTGATGGACGACCATATGGTGCGGATCATGAATGAG
ATGAATGGCCTGCGTGACACGGAGGCCACCACACTGCTTTACGAAGTCGT
GGGCATCTCCGATGTTGACGTGGAGGGACAGATGTCACTTGTCGAGCACG
TGGCGCGGAAGCACGGAGGGTACGGGATCCTACACTCCAAAGATGAGGCA
GACGCGGTCGACATGTGGCGGGCGCGCAAGGAGGCACTGTGGGCGGCGCA
GGCTGCCTACCCGGACAGGGAAGTGATGATCACCGACGTGTGCGTCCCGC
TCTCGAAGCTGCCCGACCTGATCGGACAGAGCAAGGACAAAATTCGAGCC
TCatccctgccctcgcccctgGTGGCGCATGCCGGAGACGGAAACTTCCA
CGCCTTTATCATCTTCCGCCCAGACAGgccagaggaggtggaggaggcca
agggtCTGAGCGCTTTCATGGTAAAGTCGGCGCTGGCGCTGGACGGGACA
TGCACCGGCGAGCACGGCAttggggtgggaaagatcaagtacctggagaa
ggagttTGGGACTGGCGCCTTGCAGACGATGGCAGCGATCAAGCGCGCCT
TAGATCCGTACAATTTGCTGAATCCCGGAAAGGTATTGCCTCAGTCTCTT
GTTCCTGCGCAAGAATATTTCCGTTAGTGTACTTGATTTGAGAAGCACGC
TATCTTTTATTACAAGATGAAATAAAGCGAGCAAGTCAGTCGAATTTACA
AATTCCCTCGTTTCCTTTGGATGCAAATTTCTAATTTTGTTtgtgcattt
tttttcctttagTTTTCAACGAGCCTTCATTCCAGCACTTGCCTTCGCCG
TGACCTTGTCCAGTACAGCCAGACTCCATTACTTCCGCAAGGTCCTAGCT
AAATTTTCAAGCTTACGAATTTCATGTTGGAAATGCTTGCTCACCTCCTG
GCGATTCTCATGCTCCCC

Coding sequence (CDS) from alignment at CM002469.1:436621..439088+

>rna6759 ID=rna6759|Name=rna6759|organism=Nannochloropsis gaditana|type=CDS|length=3588bp|location=Sequence derived from alignment at CM002469.1:436621..439088+ (Nannochloropsis gaditana)
ATGAGGGGTTGGATGCGCATTGGTAGGCGTGATGCGGCGTCTATTTGGAC
TTTATACGCTTCAGGCTGCTGCAGGAGGTTGACAAGCTCCCACGGGTCAC
GATTCATGAGTTTCACTGAGAAAAAAGGGCCTCAGGGCTGGACCGGGACG
GGTACCCTTTGTAGATGTGAATCGCACCGTAGTCGCCAGCTTCGACATCC
TGCTTCCTCGATTTTGCTGTCCCACGGTCACTGCATCCTAGCAATCGCAG
CAGGACTCGCCGTGGTTGCGCAAAACGGCGGTGTCAGCAATGAAAGCCGT
GGTCGGGACACCCTTTGTGAGGCCTCTCTCGAGGCTTCCCCCGAGCAGCA
GTCAAGAGATGCAGGAGTCAATCAAGGTGACCTCCCGTACGATTTCGTGG
TTGCCCTTCGAGATATTGTGGGTCCAGAATATGTGTCCCAAGATTCAGAG
GAACGCGCACTCCACGGAAAGCCGTGGAGCTCGTACCACAAGATCACCCA
GATTCCCGACGTCATAGTGCAGCCTGCGTCCACGGAACAAGTATCACGCA
TCATGCGTCTATGCTGGTTGTATCGCATTCCTGTCGTACCCTACGGAGGC
GCTACCTCACTTGAAGGCCATACATTGGCGCCTTCCCGGGGTTTGTCTTT
GGACATGAACCGCATGAACCGCATCCTGCGAGTGTCCATCGAGGATCTTG
ACGCCACCGTAGAGGCCGGCCTGGGCTACTTGGATCTAAACGAGGCCCTG
CGCGACCAGGGCGCACACTTTCCCCTAGACCCGGGGCCAGGGGCATCCAT
CGGCGGCATGTGTGCATGTCGATGTTCTGGCTCAACCGCTGTCAAGTATG
GCACGATGCGCGACAGCGTGCTGAGCGTGACGGCGGTGCTGGCCGACGGG
ACAGTCCTGAAGACGGGCTCGAGGGCGCGCAAGTCTGCGGCAGGTTACGA
CCTGACGCGCCTACTGATTGGAAGCGAGGGAACCCTTGGCATCGTCACCG
AAGTCACCCTGCGCTTGCGTCGTAAGCCCAAGCGGTCTGCGGCCATTCGC
GTCTGTTTCCCCTCCGTTcgcgaggcggcggcggctgccagCGCCACCCT
GCAGGCTGGGGTCGAGGTCGGGCGTTGTGAGCTGATGGACGACCATATGG
TGCGGATCATGAATGAGATGAATGGCCTGCGTGACACGGAGGCCACCACA
CTGCTTTACGAAGTCGTGGGCATCTCCGATGTTGACGTGGAGGGACAGAT
GTCACTTGTCGAGCACGTGGCGCGGAAGCACGGAGGGTACGGGATCCTAC
ACTCCAAAGATGAGGCAGACGCGGTCGACATGTGGCGGGCGCGCAAGGAG
GCACTGTGGGCGGCGCAGGCTGCCTACCCGGACAGGGAAGTGATGATCAC
CGACGTGTGCGTCCCGCTCTCGAAGCTGCCCGACCTGATCGGACAGAGCA
AGGACAAAATTCGAGCCTCatccctgccctcgcccctgGTGGCGCATGCC
GGAGACGGAAACTTCCACGCCTTTATCATCTTCCGCCCAGACAGgccaga
ggaggtggaggaggccaagggtCTGAGCGCTTTCATGGTAAAGTCGGCGC
TGGCGCTGGACGGGACATGCACCGGCGAGCACGGCAttggggtgggaaag
atcaagtacctggagaaggagttTGGGACTGGCGCCTTGCAGACGATGGC
AGCGATCAAGCGCGCCTTAGATCCGTACAATTTGCTGAATCCCGGAAAGG
TATTGCCTCAGTCTCTTGTTCCTGCGCAAGAATATTTCCGTTAGATGAGG
GGTTGGATGCGCATTGGTAGGCGTGATGCGGCGTCTATTTGGACTTTATA
CGCTTCAGGCTGCTGCAGGAGGTTGACAAGCTCCCACGGGTCACGATTCA
TGAGTTTCACTGAGAAAAAAGGGCCTCAGGGCTGGACCGGGACGGGTACC
CTTTGTAGATGTGAATCGCACCGTAGTCGCCAGCTTCGACATCCTGCTTC
CTCGATTTTGCTGTCCCACGGTCACTGCATCCTAGCAATCGCAGCAGGAC
TCGCCGTGGTTGCGCAAAACGGCGGTGTCAGCAATGAAAGCCGTGGTCGG
GACACCCTTTGTGAGGCCTCTCTCGAGGCTTCCCCCGAGCAGCAGTCAAG
AGATGCAGGAGTCAATCAAGGTGACCTCCCGTACGATTTCGTGGTTGCCC
TTCGAGATATTGTGGGTCCAGAATATGTGTCCCAAGATTCAGAGGAACGC
GCACTCCACGGAAAGCCGTGGAGCTCGTACCACAAGATCACCCAGATTCC
CGACGTCATAGTGCAGCCTGCGTCCACGGAACAAGTATCACGCATCATGC
GTCTATGCTGGTTGTATCGCATTCCTGTCGTACCCTACGGAGGCGCTACC
TCACTTGAAGGCCATACATTGGCGCCTTCCCGGGGTTTGTCTTTGGACAT
GAACCGCATGAACCGCATCCTGCGAGTGTCCATCGAGGATCTTGACGCCA
CCGTAGAGGCCGGCCTGGGCTACTTGGATCTAAACGAGGCCCTGCGCGAC
CAGGGCGCACACTTTCCCCTAGACCCGGGGCCAGGGGCATCCATCGGCGG
CATGTGTGCATGTCGATGTTCTGGCTCAACCGCTGTCAAGTATGGCACGA
TGCGCGACAGCGTGCTGAGCGTGACGGCGGTGCTGGCCGACGGGACAGTC
CTGAAGACGGGCTCGAGGGCGCGCAAGTCTGCGGCAGGTTACGACCTGAC
GCGCCTACTGATTGGAAGCGAGGGAACCCTTGGCATCGTCACCGAAGTCA
CCCTGCGCTTGCGTCGTAAGCCCAAGCGGTCTGCGGCCATTCGCGTCTGT
TTCCCCTCCGTTcgcgaggcggcggcggctgccagCGCCACCCTGCAGGC
TGGGGTCGAGGTCGGGCGTTGTGAGCTGATGGACGACCATATGGTGCGGA
TCATGAATGAGATGAATGGCCTGCGTGACACGGAGGCCACCACACTGCTT
TACGAAGTCGTGGGCATCTCCGATGTTGACGTGGAGGGACAGATGTCACT
TGTCGAGCACGTGGCGCGGAAGCACGGAGGGTACGGGATCCTACACTCCA
AAGATGAGGCAGACGCGGTCGACATGTGGCGGGCGCGCAAGGAGGCACTG
TGGGCGGCGCAGGCTGCCTACCCGGACAGGGAAGTGATGATCACCGACGT
GTGCGTCCCGCTCTCGAAGCTGCCCGACCTGATCGGACAGAGCAAGGACA
AAATTCGAGCCTCatccctgccctcgcccctgGTGGCGCATGCCGGAGAC
GGAAACTTCCACGCCTTTATCATCTTCCGCCCAGACAGgccagaggaggt
ggaggaggccaagggtCTGAGCGCTTTCATGGTAAAGTCGGCGCTGGCGC
TGGACGGGACATGCACCGGCGAGCACGGCAttggggtgggaaagatcaag
tacctggagaaggagttTGGGACTGGCGCCTTGCAGACGATGGCAGCGAT
CAAGCGCGCCTTAGATCCGTACAATTTGCTGAATCCCGGAAAGGTATTGC
CTCAGTCTCTTGTTCCTGCGCAAGAATATTTCCGTTAG

Synonyms

Publications