rna6753, rna6753 (mRNA) Nannochloropsis gaditana

Overview
Namerna6753
Unique Namerna6753
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length2657
Alignment locationCM002469.1:425135..426313 -

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100082g21.9358.mrna
Orig protein idgnl|cribi|Naga_100082g21.9358
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002469.1supercontigCM002469.1:425135..426313 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100082g21gene6529Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM23926.1cds6737Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna6753rna6753-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna6753 ID=rna6753|Name=rna6753|organism=Nannochloropsis gaditana|type=mRNA|length=2657bp
GAAAGCATCTGGTGAATCTCACTTCATATAATTCCCACACACACCACTTT
CACTTGCGCATACACATGCTCAAAAATTATGGATGCGGCCGTTTCAAAAT
GCCCATTGCTATGATTGTAAGTTTCAATAGTCGCACGACAAACCAAGACC
GCACCTTGACCTTTTACAAGCTGGGACGGACACACGGGGGCCAAGAATTG
CCCCGGCCACCTCCCGCCCCCGTCGCTCCTTGCTTGTTTCCTCCACACGC
ACGCGTATACTACCTTGATCGCTCTCCTTTCACAGCACATGCCATATCCC
ATCACGAATCACCTCACAGTCAGTTCTTACAATCGCAGGCGAGTGGCAAG
CATAGTCCATGCTTGTTCGCCGTGCGGTGTTCAGACTCACAAACCAGCAT
CCTTGCCGCCGCGCAGTCCTTCTTTCAGTCCTCCTTCCCGCTGTACTCAT
GACCTCACGTGGAAACGCTTTCGTCCAGCCCTCGCCTCACCGCGGTAAAC
ACAGCTCTAAGCACCACCATCAGCGAATTGTTGATCAACAGCATCAGTAT
CAGCAATTGCAGCAACAGCGTGACCAGCATACTCACCCGACCTTGCCATC
TGCGCCGGCTACTAGTGCCTCTAACCATTTAACAGACGCCTTGTTTCGCG
ATTTACCCTTGTCGGACAATACACAGCGAGCACTTGCGGAAACTTTGGGA
TTCGATCGCATGACTCACGTCCAGGAAGCTACCATGCCTCTGGTCCTGGC
AGGCAATGACGTTATGGCCAAGGCGAAGACTGGTACGGGGAAGACTCTGG
CATTTTGCATCCCGGCCCTCGAACAACTTCGGCAGAGACCTCCTCGTGCA
GGCAGCATCTCTGTCCTGGTGCTCTCGCCAACCCGTGAGCTTGCCCAGCA
AATACATGTGGAGGCGTCCAAGCTCTTGACTTTCCAGAAGGCTCTCAAAG
CGGACCTTAGTTATGGGGGGACCAACGTCAATGCCGAGCGAAAGCGCCTC
TTGCAACGGCCTCCGGACATCCTTGTGGCGACACCAGGCCGCCTGCTGGA
CCATTTAGAGAACAACGGCCTGGCACCCTATTTCCAGGACCTGCGCGTCC
TGATTTTGGACGAGGCGGACCAGCTTCTTGACATGGGTTTCAGACCTGCC
ATCGAGAAGATAATCGGCTTCTTGCCCTCTCACGCTCGACAGACTCTTTT
GTTCAGTGCTACCATGCCAAAGGGAGTCAAGGAAGTCGCGGGCTTGGCCA
TGCGCCCAGGCTATAAATTCATCGACACGGTGGGCGCGGAGGAGCAGGAC
ACAAATATCCAGGTGACGCAGTCGGCGGCCATCTTGCCTTTAGACCAGCA
CTTTGCTTACCTGCACACTCTTCTAAGCAAGGCTAAGCAAGATCCAGCCC
ACAAGGTCATCGTATTCTTCACGACCGCGCGGCTGGTCGGCTACTACTGC
GAGTTGATGGGTAAGGCGGGGATCCAGGCCATGGAGATCCATTCGCGCAA
GTCGCAGGCCACCCGTACCAAGACCTCGGATCAATTTCGCGTGGCGAAGT
CCGGCATTCTCTTCTCCTCTGACGTGAGTGCTCGTGGCGTGGACTACGAG
GGAATTACTCACGTTGTCCAGATGGGCGTGCCCAGCAACAGGGAAATGTA
CGTCCATCGGCTGGGCCGCACGGGGCGCGCCGGGAGGGACGGACAGGGCA
TCCTTGTGCTGACCCCCGACGAGAGCTTTTTCCTTCGGGATTTGAAGGAC
TTGCCTGTGAGCATGATTCCCACGCAGGCTTGCCAGCCCGACCAGGCTAG
CCTGGAGGCCGTGCGGCGCGCGATCCCGTCGGTGGACGAGCGCGCCGTCG
GTGCCGCCTATCAGGCATGGCTGGGTTTTTACAACTCGGTGCCGGGCTTG
AAATGGAGCAAGACTCGGCTTGTGGAGGAGGCGAATGCCTTTGCTCTCAT
CATGGGGTGCAAGGACCAGCCCCCTGCGCTTCTGAAGAAGACCGTGGGCA
TGATGGGACTCAGAGGCGTGCCTGGATTGAGGATCGAGGGCAGCCTCCCG
GGTGCGAGTGGTCGCAATGGCGGACATGCAGGCGGTGGTAACAATGTAAG
GAAGCGCACGCCAAGCGTTTCATCCGATGCCGGGGGCAGGCGCGGGAGGG
ACACTCACGGGGGCGGTCGTGTTGGGGAGCCGAGCCAGAAGAGGCCTCCT
CACGCGAACGGACAGAGCCCCGGCCAGGCTCAGTCATATAACTTTCCGAA
GCCTGATGTTAGGATGGGCAGCGAGGGGGCAGGAAGAGGAGATGGAATCT
CGGGTAAGGGAGGCCTAGGCCGGGAGAAACCTTATCGCGATAGGGGGGGG
AGAGGGAGCACGCCGACTGGCGGAGGAAGCGGAAGAGGAGGGGGGCGCAA
AGGGGGCGGGTATGATGGAAGTAGGTAAGGGAAGGAGTTTCCGGAGAAAG
AGGGATTGCAAAGGAAAGGTTGTGGTCGCGTCTGAGCGGTCAAGGTACCC
AAAACGCACATGAATTTGACGGGCAATTATTGTGTAGCATGACGAAGTAG
CAATTTTTACGATATCCGCTTTAAGTCAAACCTGTCGCCGGGCAGCTGGT
CATCTTACACAAAGTAAAAGCATGCCAAATCGGCCCTCTCGGCCACTCTG
GATATCT
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protein sequence of rna6753

>rna6753-protein ID=rna6753-protein|Name=rna6753|organism=Nannochloropsis gaditana|type=polypeptide|length=178bp
MLLPSLAKRFLGLGCAMETAAAVSAATIKNRRPYIAVCGMQRFFSDGGGG
GAMGGDGGGSITYSGGQATSGQGGFYGAGGARANKTQTKHRPEAVAHAAD
IKSLRMLMEEVEELEVQLRSADELPKQISIKSAIKKKASGRDMTELLKRL
ELKGQPVWGLSVSERDLVKEARRRFNSC
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mRNA from alignment at CM002469.1:425135..426313-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna6753 ID=rna6753|Name=rna6753|organism=Nannochloropsis gaditana|type=mRNA|length=1179bp|location=Sequence derived from alignment at CM002469.1:425135..426313- (Nannochloropsis gaditana)
TCTTTCCCCGGGGGGGGCACGGCTTCCTCCTGTCCGCCGTGACAGGCTTG
AATCATCCACGCTTGCAGCCATTGGTCCCTTTTTGCGCTCTGACAGTATA
TCTAGATTTCTGGGGTCATGCAACGTCTGAATGCATACTTTGTCCTGCGT
TTAGTTTTTTCTTTCCGTGCTGCCGACCTGGAAATACCCGCTAATGCAGG
TAGTACTTCGAATAACACTGTCCATCGCATCATGCTCGCGAGATAGAGAT
GAAGAGGGGCTTTACATGGTAGGCACTCTTCTACGTCATCAATGGGGCAT
TGGTTTAGCTGTTGGGTTAGGATTTTCGTTGTAAAAATATTGGAGGTTGC
TTGTATAGCTAGGAGACGCGAAAGATTGTGCGCCTATGACACACAAAGTC
TTGCGAACGGAATCTCAGTACAATTTTGATGATCGAAATCATTAGTATAC
TATTTCACCTCATGTCGCCGCCATTATTCCAATGCTTTTACCATAGACCT
TTGTTTCACGAGAAACAATGCTTTTGCCGAGCTTAGCGAAAAGGTTTCTG
GGCCTAGGGTGCGCAATGGAAACCGCTGCAGCAGTATCCGCTGCAACAAT
CAAGAACCGACGGCCTTATATTGCTGTTTGTGGTATGCAGCGTTTCTTTT
CAGATGGCGGTGGTGGGGGAGCTATGGGTGGTGATGGGGGAGGGAGTATC
ACTTACAGCGGAGGACAGGCAACATCGGGTCAGGGAGGGTTTTATGGAGC
GGGCGGGGCGCGGGCGAATAAGACACAGACCAAACACCGCCCTGAAGCTG
TGGCTCACGCAGCGGATATCAAATCACTTCGAATGCTGATGGAGGAAGTG
GAGGAGCTTGAGGTACAATTGCGTTCTGCAGATGAGTTGCCTAAACAGAT
TTCAATCAAGTCTGCCATAAAAAAGAAGGCATCGGGCAGGGACATGACCG
AGCTTTTGAAGCGTTTGGAACTCAAAGGCCAGCCGGTCTGGGGCCTGAGC
GTTAGCGAACGCGACCTGGTGAAAGAAGCCCGTCGCCGTTTTAACTCGTG
TTGAGCCGCTTAAACAGTCATTGTAGGAATCCGTTCGGTTGGAGCTCCAT
GTCGCCACGCAATGCATGAGTATCAAAGTGACGTTACGCGCGGGATGAAT
CGTATTTGTCGATATCAAAGGCAATTACG
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Coding sequence (CDS) from alignment at CM002469.1:425135..426313-

>rna6753 ID=rna6753|Name=rna6753|organism=Nannochloropsis gaditana|type=CDS|length=537bp|location=Sequence derived from alignment at CM002469.1:425135..426313- (Nannochloropsis gaditana)
ATGCTTTTGCCGAGCTTAGCGAAAAGGTTTCTGGGCCTAGGGTGCGCAAT
GGAAACCGCTGCAGCAGTATCCGCTGCAACAATCAAGAACCGACGGCCTT
ATATTGCTGTTTGTGGTATGCAGCGTTTCTTTTCAGATGGCGGTGGTGGG
GGAGCTATGGGTGGTGATGGGGGAGGGAGTATCACTTACAGCGGAGGACA
GGCAACATCGGGTCAGGGAGGGTTTTATGGAGCGGGCGGGGCGCGGGCGA
ATAAGACACAGACCAAACACCGCCCTGAAGCTGTGGCTCACGCAGCGGAT
ATCAAATCACTTCGAATGCTGATGGAGGAAGTGGAGGAGCTTGAGGTACA
ATTGCGTTCTGCAGATGAGTTGCCTAAACAGATTTCAATCAAGTCTGCCA
TAAAAAAGAAGGCATCGGGCAGGGACATGACCGAGCTTTTGAAGCGTTTG
GAACTCAAAGGCCAGCCGGTCTGGGGCCTGAGCGTTAGCGAACGCGACCT
GGTGAAAGAAGCCCGTCGCCGTTTTAACTCGTGTTGA
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Synonyms
Publications