rna6744, rna6744 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna6744
Unique Name	rna6744
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1466
Alignment location	CM002469.1:396839..398504 +

Link to JBrowse

Properties


Property Name	Value
Product	dihydrouridine synthase
Orig transcript id	gnl\|cribi\|Naga_100027g53.136.mrna
Orig protein id	gnl\|cribi\|Naga_100027g53.136
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002469.1	supercontig	CM002469.1:396839..398504 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100027g53	gene6520	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna6744	rna6744-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM23958.1	cds6728	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002469.1:396839..398504+
coding sequence from alignment at CM002469.1:396839..398504+

mRNA sequence

>rna6744 ID=rna6744|Name=rna6744|organism=Nannochloropsis gaditana|type=mRNA|length=1466bp
AATTTACTGGCCATCACAATTTTCTTTCACAAACCCAAAGGTCCGATAAA
GCAAATGCATTTGTTCAAACTGCGGCAGGATGGGCCACGAGGGACATGTA
TTTCCTAATTGTAGCATCGCGTGCTTTGTGCGGAAGGTGGTCGAGTGGGT
GTACGACCAGTAGTACGCTCAGCTCACCTCCCCGCAAGAAATGAACAAGC
TTACGAGTTTACAGGAATGAGCGTGCGCCTATCGTGCCTCCTTCTTTTTG
AGCCGTCAACTCCTTTACCTGTGCATCCTTCAATCTGTGACGAGTGTTGT
CTTTTCCAGTTTAGCATTCTGTCTTCCTCGTTCTCTGTTTGCACTTAACT
CGAGTAATTGAGAGCGACCGTCGTGTGACACCGCTCGGCGCTTGTTTCGC
CCGCCGATCATCGTGCCCAGAGATGTTTCTTGCTTCCCGCAGCCGCCAGT
CCTGGCTTCTCTCTTCATTCATTCCCGCCACTCGCACAAGTTCATTTTTA
ACAGCATGAGGAAGTGCGTAGAATAGCTGTCTCATCTCTTAAACGGCAGG
GGAAAGGCCTAAATTCCCTACTCTTGCGTAGGACGAGCGGACCAAAGCGA
CGACAACCATGGCAGTAACACTCCACACAAGTCTGGGCAGTATAAAACTT
GAACTCTACTGTGACCTAGTTCCCCGGACTTGCAAGAATTTTTTGGCACT
GGCTGCATCGGGCACATACGACAACACTCTTTTTCACCGCAATATTCGCG
ATTTCATGGTGCAAGGCGGGGATCCAACCGGGACAGGCAAGGGTGGGGAG
AGTATCTGGGGTGGCTACTTGGAGGATGAATTTCACCCGGCGCTCAAGCA
TGACCGCCGCGGTATTGTTTCGATGGCAAACCGGGGGCCAGGCACCAATG
GCTGCCAATTTTTTATTACTTACGGAGAGCACAAGCATCTCAACAACAAG
TACACGATTTTTGCAAGGCTAATCGACGGCATGGACGTCCTCGATGCCTT
GGAAAAAGCTCCTGTGGGAAAGAAAAGCCGGCCAGTGACTGACCTTGTCA
TTAAATCTGTTCAGATTCACGCTAATCCATTCGCTGATGCTCTTGTATAG
GACTCTTACGACAAGTGGACCATTTGAAAACAGTTTGCCTCATACAGCAC
GCTGCCGAGCGCACCATGGGATGGCGTTGTGCTATATAGCGCCCACGGAT
TACTTCTTGGTAGTACGGATGTCTGATGTTGACACTGTGCAAAGTATCTT
GTAGACTTTTTGAAGAAGTTATTTTTATCCCGAAGTCAAAACTCTGATCA
GATTCTGAGGTTCAGCCGACAAGGGTTCCAAGTAGAGTAGGACACCACGA
GGTGGTTGCATCAGGTCCGAAAGGGGATCTGTTTTCTTGATATGATGGTA
AATAATCAAGGCGGACATTCATTTAAAATCTGTTTAAGAAAGATGTAGTG
GTGCTCAAATACTTAA

protein sequence of rna6744

>rna6744-protein ID=rna6744-protein|Name=rna6744|organism=Nannochloropsis gaditana|type=polypeptide|length=522bp
MSFYTIPFLALKSFLHRVAERPRVPSHMVSRHQSQRQTRTPPLSIIAVFL
INFHHIIPTVELRSMRVNGMSSIPHFLHKHYSPIHIGRVILRHPAVSKRY
ASSITMMKQEHMHATRGEGHDLLLRLGNPRWIAAPMVQQSDLAFRTLVRR
YGIDLAYTQMFHATNFANVKVYREENWDGLGNAPENAFDRPLIAQFAGDS
ADELVRAASLIQHEVDAVDLNLGCPQRIAKRGHYGAYLLEERNLVVRLLS
HMVKHLAVPVTTKIRLLPNERDTLELVKAIEDAGVALLTIHGRTREQNKM
SVGKADWAAINKIKCACHIPVVANGGVETYEDALACQSVTGADAVMSSEG
LLENPSLFLPGSSLLVGGERSRMQSCEREVEAFALAHRQLNFAQEYLELA
KKFWPREGVATVKGHLFKMLYHILEVPANYDLREKLGAKGNGIKQYEQVV
QELLETRYSSIDVAIVLTKGAIVSPVSWYRRHREGHALALQRVKQLCVSG
NATNAGLKERLLEKRASRRIAL

mRNA from alignment at CM002469.1:396839..398504+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna6744 ID=rna6744|Name=rna6744|organism=Nannochloropsis gaditana|type=mRNA|length=1666bp|location=Sequence derived from alignment at CM002469.1:396839..398504+ (Nannochloropsis gaditana)
ATGTCGTTCTATACCATTCCTTTCCTAGCTTTGAAGTCGTTTCTACACAG
AGTTGCAGAAAGGCCTAGGGTGCCATCCCACATGGTTTCCAGACATCAAT
CGCAGCGCCAGACAAGAACGCCGCCCTTGTCAATCATTGCGGTCTTTTTG
ATTAACTTCCATCACATAATTCCGACTGTAGAATTGCGGTCCATGAGAGT
CAACGGCATGTCGTCAATACCTCATTTTCTTCATAAGCATTATTCGCCAA
TTCACATTGGTAGAGTCATTCTCCGTCACCCGGCCGTTTCAAAGCGCTAT
GCGTCAAGCATTACTATGATGAAGCAGGAGCACATGCACGCTActcgagg
ggaaggacatgACCTATTATTGCGCCTTGGCAACCCCCGATGGATAGCTG
CGCCGATGGTACAGCAGTCGGATTTGGCCTTCAGGACGTTGGTTAGACGC
TATGGTACGAAGGTCTTATTATCCATTCATGTCGCGTGCTTATAAAACGA
AGCACGATTGCATTATGTTGTAATTATCTAACGTTCTCCCACTCGTAACA
GGCATTGATCTGGCTTACACGCAGATGTTCCACGCAACTAATTTTGCTAA
TGTAAAAGTATATAGGGAGGAGAACTGGGACGGTTTGGGAAATGCTCCCG
AGAATGCATTTGATCGACCGCTAATTGCTCAGTTTGCGGGGGATTCTGCT
GATGAATTGGTCCGAGCTGCATCATTGATTCAGCACGAGGTTGATGCAGT
CGATCTCAACCTTGGATGTCCACAGCGTATTGCCAAACGAGGTCATTACG
GAGCATATTTGCTGGAAGAGAGGAATTTGGTTGTGAGACTTCTTTCGCAC
ATGGTAAAACATCTTGCCGTCCCTGTAACAACTAAAATTCGCCTCTTGCC
AAACGAGCGAGATACTTTGGAGCTAGTGAAAGCCATAGAGGATGCAGGAG
TGGCATTATTAACGATCCATGGTAGGACAAGGGAGCAAAATAAAATGTCA
GTAGGAAAAGCGGATTGGGCCGCTATCAACAAGATCAAGTGTGCTTGTCA
TATTCCTGTGGTAGCAAACGGGGGAGTCGAGACTTATGAAGACGCTCTTG
CTTGTCAATCTGTGACTGGAGCCGATGCTGTCATGTCATCAGAAGGTCTG
CTAGAaaatccctccctttttctacCTGGTTCTTCTCTGCTCGTGGGAGG
TGAAAGAAGTCGTATGCAATCATGTGAACGAGAAGTAGAGGCATTTGCAC
TGGCCCACCGTCAATTAAATTTTGCACAAGAATACCTCGAGCTCGCAAAA
AAATTTTGGCCTCGGGAGGGAGTAGCAACCGTAAAAGGTCATTTATTTAA
AATGCTTTATCACATTTTAGAAGTGCCTGCCAATTATGATTTGCGAGAAA
AGCTCGGGGCCAAGGGAAATGGAATTAAGCAATATGAACAAGTAGTGCAA
GAACTTCTGGAGACACGTTACTCCAGTATAGATGTTGCGATAGTGCTCAC
AAAAGGCGCTATAGTTTCGCCTGTGAGCTGGTATCGACGACATCGCGAAG
GTCATGCACTAGCACTCCAGCGTGTAAAACAGCTATGCGTGTCAGGGAAT
GCCACAAATGCTGGACTTAAAGAGCGTCTTTTGGAAAAGCGTGCGTCACG
TCGAATAGCTCTGTAG

Coding sequence (CDS) from alignment at CM002469.1:396839..398504+

>rna6744 ID=rna6744|Name=rna6744|organism=Nannochloropsis gaditana|type=CDS|length=3138bp|location=Sequence derived from alignment at CM002469.1:396839..398504+ (Nannochloropsis gaditana)
ATGTCGTTCTATACCATTCCTTTCCTAGCTTTGAAGTCGTTTCTACACAG
AGTTGCAGAAAGGCCTAGGGTGCCATCCCACATGGTTTCCAGACATCAAT
CGCAGCGCCAGACAAGAACGCCGCCCTTGTCAATCATTGCGGTCTTTTTG
ATTAACTTCCATCACATAATTCCGACTGTAGAATTGCGGTCCATGAGAGT
CAACGGCATGTCGTCAATACCTCATTTTCTTCATAAGCATTATTCGCCAA
TTCACATTGGTAGAGTCATTCTCCGTCACCCGGCCGTTTCAAAGCGCTAT
GCGTCAAGCATTACTATGATGAAGCAGGAGCACATGCACGCTActcgagg
ggaaggacatgACCTATTATTGCGCCTTGGCAACCCCCGATGGATAGCTG
CGCCGATGGTACAGCAGTCGGATTTGGCCTTCAGGACGTTGGTTAGACGC
TATGGCATTGATCTGGCTTACACGCAGATGTTCCACGCAACTAATTTTGC
TAATGTAAAAGTATATAGGGAGGAGAACTGGGACGGTTTGGGAAATGCTC
CCGAGAATGCATTTGATCGACCGCTAATTGCTCAGTTTGCGGGGGATTCT
GCTGATGAATTGGTCCGAGCTGCATCATTGATTCAGCACGAGGTTGATGC
AGTCGATCTCAACCTTGGATGTCCACAGCGTATTGCCAAACGAGGTCATT
ACGGAGCATATTTGCTGGAAGAGAGGAATTTGGTTGTGAGACTTCTTTCG
CACATGGTAAAACATCTTGCCGTCCCTGTAACAACTAAAATTCGCCTCTT
GCCAAACGAGCGAGATACTTTGGAGCTAGTGAAAGCCATAGAGGATGCAG
GAGTGGCATTATTAACGATCCATGGTAGGACAAGGGAGCAAAATAAAATG
TCAGTAGGAAAAGCGGATTGGGCCGCTATCAACAAGATCAAGTGTGCTTG
TCATATTCCTGTGGTAGCAAACGGGGGAGTCGAGACTTATGAAGACGCTC
TTGCTTGTCAATCTGTGACTGGAGCCGATGCTGTCATGTCATCAGAAGGT
CTGCTAGAaaatccctccctttttctacCTGGTTCTTCTCTGCTCGTGGG
AGGTGAAAGAAGTCGTATGCAATCATGTGAACGAGAAGTAGAGGCATTTG
CACTGGCCCACCGTCAATTAAATTTTGCACAAGAATACCTCGAGCTCGCA
AAAAAATTTTGGCCTCGGGAGGGAGTAGCAACCGTAAAAGGTCATTTATT
TAAAATGCTTTATCACATTTTAGAAGTGCCTGCCAATTATGATTTGCGAG
AAAAGCTCGGGGCCAAGGGAAATGGAATTAAGCAATATGAACAAGTAGTG
CAAGAACTTCTGGAGACACGTTACTCCAGTATAGATGTTGCGATAGTGCT
CACAAAAGGCGCTATAGTTTCGCCTGTGAGCTGGTATCGACGACATCGCG
AAGGTCATGCACTAGCACTCCAGCGTGTAAAACAGCTATGCGTGTCAGGG
AATGCCACAAATGCTGGACTTAAAGAGCGTCTTTTGGAAAAGCGTGCGTC
ACGTCGAATAGCTCTGTAGATGTCGTTCTATACCATTCCTTTCCTAGCTT
TGAAGTCGTTTCTACACAGAGTTGCAGAAAGGCCTAGGGTGCCATCCCAC
ATGGTTTCCAGACATCAATCGCAGCGCCAGACAAGAACGCCGCCCTTGTC
AATCATTGCGGTCTTTTTGATTAACTTCCATCACATAATTCCGACTGTAG
AATTGCGGTCCATGAGAGTCAACGGCATGTCGTCAATACCTCATTTTCTT
CATAAGCATTATTCGCCAATTCACATTGGTAGAGTCATTCTCCGTCACCC
GGCCGTTTCAAAGCGCTATGCGTCAAGCATTACTATGATGAAGCAGGAGC
ACATGCACGCTActcgaggggaaggacatgACCTATTATTGCGCCTTGGC
AACCCCCGATGGATAGCTGCGCCGATGGTACAGCAGTCGGATTTGGCCTT
CAGGACGTTGGTTAGACGCTATGGCATTGATCTGGCTTACACGCAGATGT
TCCACGCAACTAATTTTGCTAATGTAAAAGTATATAGGGAGGAGAACTGG
GACGGTTTGGGAAATGCTCCCGAGAATGCATTTGATCGACCGCTAATTGC
TCAGTTTGCGGGGGATTCTGCTGATGAATTGGTCCGAGCTGCATCATTGA
TTCAGCACGAGGTTGATGCAGTCGATCTCAACCTTGGATGTCCACAGCGT
ATTGCCAAACGAGGTCATTACGGAGCATATTTGCTGGAAGAGAGGAATTT
GGTTGTGAGACTTCTTTCGCACATGGTAAAACATCTTGCCGTCCCTGTAA
CAACTAAAATTCGCCTCTTGCCAAACGAGCGAGATACTTTGGAGCTAGTG
AAAGCCATAGAGGATGCAGGAGTGGCATTATTAACGATCCATGGTAGGAC
AAGGGAGCAAAATAAAATGTCAGTAGGAAAAGCGGATTGGGCCGCTATCA
ACAAGATCAAGTGTGCTTGTCATATTCCTGTGGTAGCAAACGGGGGAGTC
GAGACTTATGAAGACGCTCTTGCTTGTCAATCTGTGACTGGAGCCGATGC
TGTCATGTCATCAGAAGGTCTGCTAGAaaatccctccctttttctacCTG
GTTCTTCTCTGCTCGTGGGAGGTGAAAGAAGTCGTATGCAATCATGTGAA
CGAGAAGTAGAGGCATTTGCACTGGCCCACCGTCAATTAAATTTTGCACA
AGAATACCTCGAGCTCGCAAAAAAATTTTGGCCTCGGGAGGGAGTAGCAA
CCGTAAAAGGTCATTTATTTAAAATGCTTTATCACATTTTAGAAGTGCCT
GCCAATTATGATTTGCGAGAAAAGCTCGGGGCCAAGGGAAATGGAATTAA
GCAATATGAACAAGTAGTGCAAGAACTTCTGGAGACACGTTACTCCAGTA
TAGATGTTGCGATAGTGCTCACAAAAGGCGCTATAGTTTCGCCTGTGAGC
TGGTATCGACGACATCGCGAAGGTCATGCACTAGCACTCCAGCGTGTAAA
ACAGCTATGCGTGTCAGGGAATGCCACAAATGCTGGACTTAAAGAGCGTC
TTTTGGAAAAGCGTGCGTCACGTCGAATAGCTCTGTAG

Synonyms

Publications