rna6743, rna6743 (mRNA) Nannochloropsis gaditana

Overview
Namerna6743
Unique Namerna6743
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length2484
Alignment locationCM002469.1:395179..396747 -

Link to JBrowse

Properties
Property NameValue
Productpeptidyl-prolyl cis-trans isomerase 10
Orig transcript idgnl|cribi|Naga_100027g52.133.mrna
Orig protein idgnl|cribi|Naga_100027g52.133
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002469.1supercontigCM002469.1:395179..396747 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100027g52gene6519Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna6743rna6743-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM23955.1cds6727Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna6743 ID=rna6743|Name=rna6743|organism=Nannochloropsis gaditana|type=mRNA|length=2484bp
GAAGGAATTTGGCGATTCAACTTTTGCCCCCCGCTAGTCGAGCAGGGGAC
GGCGAGTCTTTTTTCACGCACGAATAACCTCGATCTCCACCTCCCACGAC
CGCCTATGCATCCATTCTGCGTCCTAATCCATCACCTCTGACCCGTGCCA
GTGCTACAGTTCATTGTCAACGTGAGTGGTTATTGTGGATATCGCAATCT
TCCCAGCCTTGGCGCGAGAATCGGCCAAGAAATACCTTAAATCAGGTGCT
GCGCAAATATACAACAAACGAGGATTGTGCGCAGCTCAATTTTTCTTGCT
TCCGGGAGACGGCCTCGACAGGCAAATTGGTGAACGCTTACTTTCTGAGA
TAGCCTATTGGATCGGTCTTGTGTCTAATCTATGACGCTGTCAATGCCAT
GCCTAGCTCCTCCTAAAAAAGTCATTGAGTTCGTTGCGCATGCTGGGCAG
GTGAATGCCGTAACATTGGACCGCCAAATGCATTCGCTAGTCGCAACGGG
GGGAGATGACAATATCATTAATGTTTGGAGGATAGACAATGCTGCTAACT
TGGCGAGCTTAAAAGGTGACAGTTCCCCCGTCAATTGCCTCGCTTCGGAT
CCCATCTCGCTGCGATTTGTCGCAGGAGGCTATGAGAGTGGTGCCATCAA
AATTTTTGATGTCGCCAGTGGAAAGGTATCGCGCTCTCTCCCAGGTCATG
CAGAAGGGGTTACATGCATTAACTATGACACTGGAGCTGGCATGCTTATT
TCAGGCTCTTTAGACACATCCTTTAAAGTGTGGGATATGCGGACCAAAAA
ATGCGCAATGCATCACAAAGGCCATCAAAGTGAGGTGACTGATGCCCAAA
TATCTCCTGATGGCCGATGGTGTTGCAGCTCAGGAAATGACGGTATTATG
AATTTGTGGGATATGCGAAACCGCGAGACCATCTATTCCTTTGAGTTGGA
AACAACGCAAGGCCAGGCTTCGCCCATCCTTCATTTCAGTTTCCACCCAA
CCCAATCAACTCTCGCCACGTATACGAAGGATTACTGCATTCGACTTTTT
AACACCGATTCATTCGAGCTCCTGGCCAGCCCACCTCGAAGGCCCCTGGA
TGAGAAATGTCTCGTCGGAGCTATGGTTTTCGATGGAAGGGGCCGCCTTT
TGACGTCCACATCGAGTCGTATGCAAATCTTATCTGACTCCACGTTGGAA
ACACAGGGTACTATAGATGCGCCATGGACTAATTTACAGTGTCTTTCCTG
GAAAGACGGCGAAATTCTGGGTGCAGCATTTGATAACAACATTGTTTCGC
TATATTCCATCACCCTTGGGACGCCAGCAGAAAGCATGACTCCAGTGTCG
ATTACGCATCAGAAGTCGAATAACGCTACGGCTAACGGAGCCCTTTCCCC
GGCAAGCGCATCCTTGAGGCTGAAAAACTCAACATCCCCTGTAACAAGCC
TAGCGTCCCTTCGATCATCTCATCTGTCCGCCGTCGCCCTCCCGTCTGTT
ACTGCGGAGCAGTGTGCGCGCAAAAGATTGTCCCCTTCCCCTGCGTTGCC
AAAGCAATCTGTATCACAAGTGAACAACAAAGACCATGTGGCAACCCAGA
GGGCAGCCAATCTCACCAACCACGGCAAGGAAAACAAGAAAGTGAGCGCA
CACATGGATCGTGACGGAAGAGCTACTATTAACTGTGCACATGGAACAAA
AATTGCTTGCAATGAAATGATACCTATAGATTTTATTGCGCGTCAAGACC
GTGCAGATGGCGAAATCATTTTTGGCACCATGCTTCATCGCAAAGTGCTT
ATGACTGCCTTGTCCGTACGATTAGAAAATCTTCAACGCTTAAATGAATT
ATGGCGAGCAGGTAAGGTACCTGAAACATTTGGACTCCTTTTTCGGCTCC
ATCAAGCGACGCCGGAAGACCAGGGCCGGCTTACGGTGCTGTCCGACTTC
CTACAGACAGTTGACCTCTTAGGTTGCGCGAGCGAGCACGGACCACTCAG
CTTGGAAACTGCCGCACCGCTCCTGCCCGTTCTAAACAGTCTATTATCGC
TTGACTTCGAAGGTCCCGTCCTTGCGGGAATTAAAACTCTCATGGCCCTT
CTCGATCTCTTAGGCACTCATGTCCAGCAAGTTCTGCGTACTCCGCTGTC
AGGTTTAGATTTGACTAGAGAGGAGCGCGTTGAAAGATGCCGCAAATTCA
ATGAGGCCATCAGCTATAGCTTTAAGCGCCTCGAAGAAATTCGTACATCA
AATACGTTTAAGGCGGCCTCACCAGCCTATCTTGCTGTGGAGAGGGCGGG
AAGGCGATTGGAATCCTACTTAGCACAGGCTGTTGCGGACTGGGAAGTAT
GGGGTGGGCGCTCAGATCAAAAGTCCAATAATGTGCAGTTTTCTGGAAAA
AGCTTGACTCGTACAAGAAAGCGATGACGCGTCGAAAATTTAAATAAGAA
AAGCAAGAGCATTTTAAGTATTTGAGCACCACTA
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protein sequence of rna6743

>rna6743-protein ID=rna6743-protein|Name=rna6743|organism=Nannochloropsis gaditana|type=polypeptide|length=163bp
MAVTLHTSLGSIKLELYCDLVPRTCKNFLALAASGTYDNTLFHRNIRDFM
VQGGDPTGTGKGGESIWGGYLEDEFHPALKHDRRGIVSMANRGPGTNGCQ
FFITYGEHKHLNNKYTIFARLIDGMDVLDALEKAPVGKKSRPVTDLVIKS
VQIHANPFADALV
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mRNA from alignment at CM002469.1:395179..396747-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna6743 ID=rna6743|Name=rna6743|organism=Nannochloropsis gaditana|type=mRNA|length=1569bp|location=Sequence derived from alignment at CM002469.1:395179..396747- (Nannochloropsis gaditana)
AATTTACTGGCCATCACAATTTTCTTTCACAAACCCAAAGGTCCGATAAA
GCAAATGCATTTGTTCAAACTGCGGCAGGATGGGCCACGAGGGACATGTA
TTTCCTAATTGTAGCATCGCGTGCTTTGTGCGGAAGGTGGTCGAGTGGGT
GTACGACCAGTAGTACGCTCAGCTCACCTCCCCGCAAGAAATGAACAAGC
TTACGAGTTTACAGGAATGAGCGTGCGCCTATCGTGCCTCCTTCTTTTTG
AGCCGTCAACTCCTTTACCTGTGCATCCTTCAATCTGTGACGAGTGTTGT
CTTTTCCAGTTTAGCATTCTGTCTTCCTCGTTCTCTGTTTGCACTTAACT
CGAGTAATTGAGAGCGACCGTCGTGTGACACCGCTCGGCGCTTGTTTCGC
CCGCCGATCATCGTGCCCAGAGATGTTTCTTGCTTCCCGCAGCCGCCAGT
CCTGGCTTCTCTCTTCATTCATTCCCGCCACTCGCACAAGTTCATTTTTA
ACAGCATGAGGAAGTGCGTAGAATAGCTGTCTCATCTCTTAAACGGCAGG
GGAAAGGCCTAAATTCCCTACTCTTGCGTAGGACGAGCGGACCAAAGCGA
CGACAACCATGGCAGTAACACTCCACACAAGTCTGGGCAGTATAAAACTT
GAACTCTACTGTGACCTAGTTCCCCGGACTTGCAAGGTACGATAGTGAGC
TCTTGGTTTTTGGAATTTGCTCCATTGTTCAAGCCAATGCACAGCTGTCA
ACCCTCCACTTTCTTTCCATCATCACGTTCTGCTGCTAGAATTTTTTGGC
ACTGGCTGCATCGGGCACATACGACAACACTCTTTTTCACCGCAATATTC
GCGATTTCATGGTGCAAGGCGGGGATCCAACCGGGACAGGCAAGGGTGGG
GAGAGTATCTGGGGTGGCTACTTGGAGGATGAATTTCACCCGGCGCTCAA
GCATGACCGCCGCGGTATTGTTTCGATGGCAAACCGGGGGCCAGGCACCA
ATGGCTGCCAATTTTTTATTACTTACGGAGAGCACAAGCATCTCAACAAC
AAGTACACGATTTTTGCAAGGCTAATCGACGGCATGGACGTCCTCGATGC
CTTGGAAAAAGCTCCTGTGGGAAAGAAAAGCCGGCCAGTGACTGACCTTG
TCATTAAATCTGTTCAGATTCACGCTAATCCATTCGCTGATGCTCTTGTA
TAGGACTCTTACGACAAGTGGACCATTTGAAAACAGTTTGCCTCATACAG
CACGCTGCCGAGCGCACCATGGGATGGCGTTGTGCTATATAGCGCCCACG
GATTACTTCTTGGTAGTACGGATGTCTGATGTTGACACTGTGCAAAGTAT
CTTGTAGACTTTTTGAAGAAGTTATTTTTATCCCGAAGTCAAAACTCTGA
TCAGATTCTGAGGTTCAGCCGACAAGGGTTCCAAGTAGAGTAGGACACCA
CGAGGTGGTTGCATCAGGTCCGAAAGGGGATCTGTTTTCTTGATATGATG
GTAAATAATCAAGGCGGACATTCATTTAAAATCTGTTTAAGAAAGATGTA
GTGGTGCTCAAATACTTAA
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Coding sequence (CDS) from alignment at CM002469.1:395179..396747-

>rna6743 ID=rna6743|Name=rna6743|organism=Nannochloropsis gaditana|type=CDS|length=984bp|location=Sequence derived from alignment at CM002469.1:395179..396747- (Nannochloropsis gaditana)
AATTTTTTGGCACTGGCTGCATCGGGCACATACGACAACACTCTTTTTCA
CCGCAATATTCGCGATTTCATGGTGCAAGGCGGGGATCCAACCGGGACAG
GCAAGGGTGGGGAGAGTATCTGGGGTGGCTACTTGGAGGATGAATTTCAC
CCGGCGCTCAAGCATGACCGCCGCGGTATTGTTTCGATGGCAAACCGGGG
GCCAGGCACCAATGGCTGCCAATTTTTTATTACTTACGGAGAGCACAAGC
ATCTCAACAACAAGTACACGATTTTTGCAAGGCTAATCGACGGCATGGAC
GTCCTCGATGCCTTGGAAAAAGCTCCTGTGGGAAAGAAAAGCCGGCCAGT
GACTGACCTTGTCATTAAATCTGTTCAGATTCACGCTAATCCATTCGCTG
ATGCTCTTGTATAGATGGCAGTAACACTCCACACAAGTCTGGGCAGTATA
AAACTTGAACTCTACTGTGACCTAGTTCCCCGGACTTGCAAGAATTTTTT
GGCACTGGCTGCATCGGGCACATACGACAACACTCTTTTTCACCGCAATA
TTCGCGATTTCATGGTGCAAGGCGGGGATCCAACCGGGACAGGCAAGGGT
GGGGAGAGTATCTGGGGTGGCTACTTGGAGGATGAATTTCACCCGGCGCT
CAAGCATGACCGCCGCGGTATTGTTTCGATGGCAAACCGGGGGCCAGGCA
CCAATGGCTGCCAATTTTTTATTACTTACGGAGAGCACAAGCATCTCAAC
AACAAGTACACGATTTTTGCAAGGCTAATCGACGGCATGGACGTCCTCGA
TGCCTTGGAAAAAGCTCCTGTGGGAAAGAAAAGCCGGCCAGTGACTGACC
TTGTCATTAAATCTGTTCAGATTCACGCTAATCCATTCGCTGATGCTCTT
GTATAGATGGCAGTAACACTCCACACAAGTCTGGGCAGTATAAAACTTGA
ACTCTACTGTGACCTAGTTCCCCGGACTTGCAAG
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Synonyms
Publications