EWM23955.1, cds6727 (CDS) Nannochloropsis gaditana

Overview
NameEWM23955.1
Unique Namecds6727
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002469.1:396062..396139 -
Alignment locationCM002469.1:395545..395958 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM23955.1
Productpeptidyl-prolyl cis-trans isomerase 10
Orig transcript idgnl|cribi|Naga_100027g52.133.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002469.1supercontigCM002469.1:396062..396139 -
CM002469.1supercontigCM002469.1:395545..395958 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006464cellular protein modification process
GO:0006457protein folding
GO:0000413protein peptidyl-prolyl isomerization
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
GO:0003755peptidyl-prolyl cis-trans isomerase activity
Vocabulary: INTERPRO
TermDefinition
IPR020892Cyclophilin-type_PPIase_CS
IPR029000Cyclophilin-like_dom
IPR024936Cyclophilin-type_PPIase
IPR002130Cyclophilin-type_PPIase_dom
Homology
BLAST of EWM23955.1 vs. NCBI_GenBank
Match: gi|585105241|gb|EWM23955.1| (peptidyl-prolyl cis-trans isomerase 10 [Nannochloropsis gaditana])

HSP 1 Score: 341.273 bits (874), Expect = 5.998e-119
Identity = 163/163 (100.00%), Postives = 163/163 (100.00%), Query Frame = 0
Query:    1 MAVTLHTSLGSIKLELYCDLVPRTCKNFLALAASGTYDNTLFHRNIRDFMVQGGDPTGTGKGGESIWGGYLEDEFHPALKHDRRGIVSMANRGPGTNGCQFFITYGEHKHLNNKYTIFARLIDGMDVLDALEKAPVGKKSRPVTDLVIKSVQIHANPFADALV 163
            MAVTLHTSLGSIKLELYCDLVPRTCKNFLALAASGTYDNTLFHRNIRDFMVQGGDPTGTGKGGESIWGGYLEDEFHPALKHDRRGIVSMANRGPGTNGCQFFITYGEHKHLNNKYTIFARLIDGMDVLDALEKAPVGKKSRPVTDLVIKSVQIHANPFADALV
Sbjct:    1 MAVTLHTSLGSIKLELYCDLVPRTCKNFLALAASGTYDNTLFHRNIRDFMVQGGDPTGTGKGGESIWGGYLEDEFHPALKHDRRGIVSMANRGPGTNGCQFFITYGEHKHLNNKYTIFARLIDGMDVLDALEKAPVGKKSRPVTDLVIKSVQIHANPFADALV 163          
BLAST of EWM23955.1 vs. NCBI_GenBank
Match: gi|298710490|emb|CBJ25554.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 241.121 bits (614), Expect = 2.763e-79
Identity = 111/160 (69.38%), Postives = 130/160 (81.25%), Query Frame = 0
Query:    1 MAVTLHTSLGSIKLELYCDLVPRTCKNFLALAASGTYDNTLFHRNIRDFMVQGGDPTGTGKGGESIWGGYLEDEFHPALKHDRRGIVSMANRGPGTNGCQFFITYGEHKHLNNKYTIFARLIDGMDVLDALEKAPVGKKSRPVTDLVIKSVQIHANPFAD 160
            M+VTL TSLG IK+E++CD VPRT +NFLA  ASG YD T FHRNI+ FMVQGGDP GTGKGGESIWGG   DEFHP  KHDRRG+VSMA++GP TN  QFFITY    HLNN YT+F ++IDG+DVLD +EKAPVGKK RP+T+++IK V IHANP A+
Sbjct:    1 MSVTLETSLGDIKIEVFCDTVPRTAENFLAHCASGYYDGTKFHRNIKGFMVQGGDPLGTGKGGESIWGGPFPDEFHPDNKHDRRGMVSMASKGPNTNKSQFFITYTRQPHLNNVYTVFGKVIDGLDVLDVIEKAPVGKKERPLTEIIIKHVTIHANPVAE 160          
BLAST of EWM23955.1 vs. NCBI_GenBank
Match: gi|695425447|ref|XP_009529179.1| (hypothetical protein PHYSODRAFT_315734 [Phytophthora sojae] >gi|348675612|gb|EGZ15430.1| hypothetical protein PHYSODRAFT_315734 [Phytophthora sojae])

HSP 1 Score: 239.58 bits (610), Expect = 1.187e-78
Identity = 108/160 (67.50%), Postives = 130/160 (81.25%), Query Frame = 0
Query:    1 MAVTLHTSLGSIKLELYCDLVPRTCKNFLALAASGTYDNTLFHRNIRDFMVQGGDPTGTGKGGESIWGGYLEDEFHPALKHDRRGIVSMANRGPGTNGCQFFITYGEHKHLNNKYTIFARLIDGMDVLDALEKAPVGKKSRPVTDLVIKSVQIHANPFAD 160
            M+VTLHT+LG IK+E+ CD  PRT +NFLAL ASG YD T FHRN++ FMVQGGDPTGTGKGG+SIWGG ++DEFHP  +H+ RGIVSMAN GP TN  QFF+TY +  HLNN YT+F ++IDGMD LDA+EK PV  K+RP+ ++VIKSV IHANP AD
Sbjct:    1 MSVTLHTTLGDIKIEVCCDTAPRTAENFLALCASGAYDGTKFHRNMKGFMVQGGDPTGTGKGGQSIWGGTIDDEFHPQNRHNCRGIVSMANSGPNTNKQQFFVTYAKQPHLNNVYTVFGKVIDGMDTLDAMEKTPVDAKNRPLKEIVIKSVTIHANPIAD 160          
BLAST of EWM23955.1 vs. NCBI_GenBank
Match: gi|673029024|ref|XP_008868473.1| (peptidyl-prolyl cis-trans isomerase-like 3 [Aphanomyces invadans] >gi|574476090|gb|ETW03089.1| peptidyl-prolyl cis-trans isomerase-like 3 [Aphanomyces invadans])

HSP 1 Score: 238.81 bits (608), Expect = 2.475e-78
Identity = 107/160 (66.88%), Postives = 130/160 (81.25%), Query Frame = 0
Query:    1 MAVTLHTSLGSIKLELYCDLVPRTCKNFLALAASGTYDNTLFHRNIRDFMVQGGDPTGTGKGGESIWGGYLEDEFHPALKHDRRGIVSMANRGPGTNGCQFFITYGEHKHLNNKYTIFARLIDGMDVLDALEKAPVGKKSRPVTDLVIKSVQIHANPFAD 160
            M+VTLHTSLG IK+E++CD  PRT +NFLAL AS +YDNT+FHRN++ FM+QGGDPTGTGKGGESIWGG ++DEFHP  +H+ RGIVSMAN G  TN  QFFITY +  HLNN YT+F ++IDG DVLDA+EKA V  K RP+ D+V+ +V IHANP AD
Sbjct:    1 MSVTLHTSLGDIKMEVFCDTAPRTAENFLALCASNSYDNTVFHRNMKGFMIQGGDPTGTGKGGESIWGGAIDDEFHPQNRHNVRGIVSMANSGANTNKQQFFITYAKQPHLNNVYTVFGKVIDGFDVLDAMEKAQVDSKHRPLKDIVLNNVTIHANPIAD 160          
BLAST of EWM23955.1 vs. NCBI_GenBank
Match: gi|301123243|ref|XP_002909348.1| (peptidyl-prolyl cis-trans isomerase 10 [Phytophthora infestans T30-4] >gi|262100110|gb|EEY58162.1| peptidyl-prolyl cis-trans isomerase 10 [Phytophthora infestans T30-4])

HSP 1 Score: 238.424 bits (607), Expect = 3.793e-78
Identity = 108/160 (67.50%), Postives = 129/160 (80.62%), Query Frame = 0
Query:    1 MAVTLHTSLGSIKLELYCDLVPRTCKNFLALAASGTYDNTLFHRNIRDFMVQGGDPTGTGKGGESIWGGYLEDEFHPALKHDRRGIVSMANRGPGTNGCQFFITYGEHKHLNNKYTIFARLIDGMDVLDALEKAPVGKKSRPVTDLVIKSVQIHANPFAD 160
            M+VTLHT+LG IK+E+ CD  PR  +NFLAL ASG YD T FHRN++ FMVQGGDPTGTGKGG+SIWGG ++DEFHP  +H+ RGIVSMAN GP TN  QFFITYG+  HLNN YT+F ++IDGMD LDA+EK PV  K+RP+ ++ IKSV IHANP AD
Sbjct:    1 MSVTLHTTLGDIKIEVCCDTAPRASENFLALCASGAYDGTKFHRNMKGFMVQGGDPTGTGKGGQSIWGGTIDDEFHPQNRHNCRGIVSMANSGPNTNKQQFFITYGKQPHLNNVYTVFGKIIDGMDTLDAIEKTPVDAKNRPLKEIAIKSVTIHANPIAD 160          
BLAST of EWM23955.1 vs. NCBI_GenBank
Match: gi|1173940346|gb|OQR89794.1| (peptidyl-prolyl cis-trans isomerase 10 [Thraustotheca clavata])

HSP 1 Score: 238.039 bits (606), Expect = 5.158e-78
Identity = 107/159 (67.30%), Postives = 127/159 (79.87%), Query Frame = 0
Query:    2 AVTLHTSLGSIKLELYCDLVPRTCKNFLALAASGTYDNTLFHRNIRDFMVQGGDPTGTGKGGESIWGGYLEDEFHPALKHDRRGIVSMANRGPGTNGCQFFITYGEHKHLNNKYTIFARLIDGMDVLDALEKAPVGKKSRPVTDLVIKSVQIHANPFAD 160
            +VTLHTSLG IK+E++CD VP T +NFLAL AS  YD T+FHRNI+ FM+QGGDPTGTGKGGESIWGG   DEFHP  +H+ RGIVSMAN GP TN  QFFITY +  HLNN YT+F ++IDG +VLDA+EK PV +K RP+ D+V+ SV IHANP AD
Sbjct:    4 SVTLHTSLGDIKIEVFCDTVPTTAENFLALCASNAYDKTIFHRNIKGFMIQGGDPTGTGKGGESIWGGKFNDEFHPQNRHNVRGIVSMANSGPNTNKQQFFITYAKQPHLNNVYTVFGKVIDGFEVLDAMEKTPVNEKHRPMKDIVLNSVTIHANPLAD 162          
BLAST of EWM23955.1 vs. NCBI_GenBank
Match: gi|669143484|ref|XP_008607304.1| (peptidyl-prolyl cis-trans isomerase-like 3 [Saprolegnia diclina VS20] >gi|530741001|gb|EQC39243.1| peptidyl-prolyl cis-trans isomerase-like 3 [Saprolegnia diclina VS20])

HSP 1 Score: 236.884 bits (603), Expect = 1.122e-77
Identity = 106/160 (66.25%), Postives = 127/160 (79.38%), Query Frame = 0
Query:    1 MAVTLHTSLGSIKLELYCDLVPRTCKNFLALAASGTYDNTLFHRNIRDFMVQGGDPTGTGKGGESIWGGYLEDEFHPALKHDRRGIVSMANRGPGTNGCQFFITYGEHKHLNNKYTIFARLIDGMDVLDALEKAPVGKKSRPVTDLVIKSVQIHANPFAD 160
            M+VTLHTSLG IK+E++CD VP T +NFLAL AS  YD T FHRN++ FM+QGGDPTGTGKGGESIWGG   DEFHP  +H+ RGIVSMAN GP TN  QFFITY +  HLNN YT+F ++IDG DVLDA+EK PV  KSRP+ ++V+ S+ IHANP A+
Sbjct:    1 MSVTLHTSLGDIKIEVFCDTVPTTAENFLALCASNAYDKTTFHRNMKGFMIQGGDPTGTGKGGESIWGGKFNDEFHPQNRHNARGIVSMANSGPNTNKQQFFITYAKQPHLNNVYTVFGKVIDGFDVLDAMEKTPVDAKSRPLKEIVLDSIAIHANPLAE 160          
BLAST of EWM23955.1 vs. NCBI_GenBank
Match: gi|675211063|ref|XP_008914416.1| (peptidyl-prolyl cis-trans isomerase-like 3 [Phytophthora parasitica INRA-310] >gi|567946877|gb|ETK72678.1| peptidyl-prolyl cis-trans isomerase-like 3 [Phytophthora parasitica] >gi|567975585|gb|ETL26130.1| peptidyl-prolyl cis-trans isomerase-like 3 [Phytophthora parasitica] >gi|568005036|gb|ETL79342.1| peptidyl-prolyl cis-trans isomerase-like 3 [Phytophthora parasitica] >gi|568034939|gb|ETM32601.1| peptidyl-prolyl cis-trans isomerase-like 3 [Phytophthora parasitica] >gi|568085302|gb|ETN00210.1| peptidyl-prolyl cis-trans isomerase-like 3 [Phytophthora parasitica INRA-310] >gi|570313087|gb|ETO61035.1| peptidyl-prolyl cis-trans isomerase-like 3 [Phytophthora parasitica P1976] >gi|570936894|gb|ETP02151.1| peptidyl-prolyl cis-trans isomerase-like 3 [Phytophthora parasitica CJ01A1] >gi|570967210|gb|ETP30329.1| peptidyl-prolyl cis-trans isomerase-like 3 [Phytophthora parasitica P10297])

HSP 1 Score: 236.113 bits (601), Expect = 2.697e-77
Identity = 107/160 (66.88%), Postives = 129/160 (80.62%), Query Frame = 0
Query:    1 MAVTLHTSLGSIKLELYCDLVPRTCKNFLALAASGTYDNTLFHRNIRDFMVQGGDPTGTGKGGESIWGGYLEDEFHPALKHDRRGIVSMANRGPGTNGCQFFITYGEHKHLNNKYTIFARLIDGMDVLDALEKAPVGKKSRPVTDLVIKSVQIHANPFAD 160
            M+VTLHT+LG IK+E+ CD  PRT +NFLAL ASG Y  T FHRN++ FMVQGGDPTGTGKGG+SIWGG ++DEFHP  +H+ RGIVSMAN GP TN  QFFITY +  HLNN YT+F ++IDG+D LDA+EK PV  K+RP+ ++VIKSV IHANP AD
Sbjct:    1 MSVTLHTTLGDIKIEVCCDTAPRTSENFLALCASGAYSGTKFHRNMKGFMVQGGDPTGTGKGGQSIWGGTIDDEFHPQNRHNCRGIVSMANSGPNTNKQQFFITYAKQPHLNNVYTVFGKVIDGLDTLDAIEKTPVDAKNRPLKEIVIKSVTIHANPIAD 160          
BLAST of EWM23955.1 vs. NCBI_GenBank
Match: gi|813102752|ref|XP_012193917.1| (peptidyl-prolyl cis-trans isomerase-like 3 [Saprolegnia parasitica CBS 223.65] >gi|641541841|gb|KDO35586.1| peptidyl-prolyl cis-trans isomerase-like 3 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 235.728 bits (600), Expect = 4.133e-77
Identity = 105/160 (65.62%), Postives = 127/160 (79.38%), Query Frame = 0
Query:    1 MAVTLHTSLGSIKLELYCDLVPRTCKNFLALAASGTYDNTLFHRNIRDFMVQGGDPTGTGKGGESIWGGYLEDEFHPALKHDRRGIVSMANRGPGTNGCQFFITYGEHKHLNNKYTIFARLIDGMDVLDALEKAPVGKKSRPVTDLVIKSVQIHANPFAD 160
            M+VTLHTSLG IK+E++CD VP T +NFLAL AS  YD T FHRN++ FM+QGGDPTGTGKGGESIWGG   DEFHP  +H+ RGIVSMAN GP TN  QFFITY +  HLNN YT+F ++IDG DVLDA+EK PV  KSRP+ ++++ S+ IHANP A+
Sbjct:    1 MSVTLHTSLGDIKIEVFCDTVPTTAENFLALCASNAYDKTTFHRNMKGFMIQGGDPTGTGKGGESIWGGKFNDEFHPQNRHNARGIVSMANSGPNTNKQQFFITYAKQPHLNNVYTVFGKVIDGFDVLDAMEKTPVDAKSRPLKEILLHSITIHANPLAE 160          
BLAST of EWM23955.1 vs. NCBI_GenBank
Match: gi|1183419068|gb|ORY43428.1| (cyclophilin-like protein, partial [Rhizoclosmatium globosum])

HSP 1 Score: 233.032 bits (593), Expect = 3.996e-76
Identity = 107/160 (66.88%), Postives = 129/160 (80.62%), Query Frame = 0
Query:    1 MAVTLHTSLGSIKLELYCDLVPRTCKNFLALAASGTYDNTLFHRNIRDFMVQGGDPTGTGKGGESIWGGYLEDEFHPALKHDRRGIVSMANRGPGTNGCQFFITYGEHKHLNNKYTIFARLIDGMDVLDALEKAPV-GKKSRPVTDLVIKSVQIHANPFA 159
            M+VTLHT LG +K+EL+C+ VPRT +NFLALAASG Y+N LFHRNI+ FM+Q GDPTGTGKGG+SIWG    DE    LKH+ RGIVSMAN+GP TN  QFFITYG+H HL++KYT+F ++IDGMD LDALEK PV G  +RP+ D+ IKS+ IHANP A
Sbjct:    1 MSVTLHTDLGDLKIELFCEAVPRTAENFLALAASGYYNNNLFHRNIKGFMIQTGDPTGTGKGGQSIWGAPFADEIKSTLKHNTRGIVSMANKGPDTNKSQFFITYGKHAHLDSKYTVFGKVIDGMDTLDALEKVPVEGGSNRPLQDIRIKSITIHANPLA 160          
The following BLAST results are available for this feature:
BLAST of EWM23955.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585105241|gb|EWM23955.1|5.998e-119100.00peptidyl-prolyl cis-trans isomerase 10 [Nannochlor... [more]
gi|298710490|emb|CBJ25554.1|2.763e-7969.38conserved unknown protein [Ectocarpus siliculosus][more]
gi|695425447|ref|XP_009529179.1|1.187e-7867.50hypothetical protein PHYSODRAFT_315734 [Phytophtho... [more]
gi|673029024|ref|XP_008868473.1|2.475e-7866.88peptidyl-prolyl cis-trans isomerase-like 3 [Aphano... [more]
gi|301123243|ref|XP_002909348.1|3.793e-7867.50peptidyl-prolyl cis-trans isomerase 10 [Phytophtho... [more]
gi|1173940346|gb|OQR89794.1|5.158e-7867.30peptidyl-prolyl cis-trans isomerase 10 [Thraustoth... [more]
gi|669143484|ref|XP_008607304.1|1.122e-7766.25peptidyl-prolyl cis-trans isomerase-like 3 [Saprol... [more]
gi|675211063|ref|XP_008914416.1|2.697e-7766.88peptidyl-prolyl cis-trans isomerase-like 3 [Phytop... [more]
gi|813102752|ref|XP_012193917.1|4.133e-7765.63peptidyl-prolyl cis-trans isomerase-like 3 [Saprol... [more]
gi|1183419068|gb|ORY43428.1|3.996e-7666.88cyclophilin-like protein, partial [Rhizoclosmatium... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6743rna6743Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications