rna6742, rna6742 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna6742
Unique Name	rna6742
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2280
Alignment location	CM002469.1:392716..395199 +

Link to JBrowse

Properties


Property Name	Value
Product	katanin p80 wd40 repeat-containing subunit b1 -like protein
Orig transcript id	gnl\|cribi\|Naga_100027g51.143.mrna
Orig protein id	gnl\|cribi\|Naga_100027g51.143
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002469.1	supercontig	CM002469.1:392716..395199 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100027g51	gene6518	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna6742	rna6742-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM23965.1	cds6726	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002469.1:392716..395199+
coding sequence from alignment at CM002469.1:392716..395199+

mRNA sequence

>rna6742 ID=rna6742|Name=rna6742|organism=Nannochloropsis gaditana|type=mRNA|length=2280bp
AAAATGAGTGGATGTCTGCCTTTTGATTCCTGGAAGGTGATTACGGCGTA
GTTTTCTTTCAACTGGAGAATTATATGGGATGAAATGTCATCAACTGTGG
AATAAAAGATGTATGATTCCATTTTAATGCGTAATAAATTTGCACTTATA
CGAAATGTTGCCATTTTGGCGCGAAGGAACTTGCTTCCTTGTACGCCTCG
TTTCCTGTTAGTGCTGTCAGCTAACCGGCCGATGGATATTTCCCCTACTC
TTACACTTCTGCTGATTAAATAAATTCTTACGGCCATCAACTCAAATGAT
GTGCAGGGCCGGAGATTGAGGAAGAGATTTGGAGCATCAACAATGGGCGT
TTAATCTGCAGGAGACTTGACCATATCTGCTTATGCCTTATGCCATATGC
TGTCTGCATATTTTCTTGGTCTGCCTGCTCTTCTTCTCAGTTATAAGCCC
AGGGTTTCCATTCTGGGTTCCCCGACACCCGCGTTCTTGTCGCCATGAGC
TTCGTTTAACTTATGAAAGACTTTGGGAGCCGTCATCTCCCCCTTCCCAA
ACGGCAGCTTCATTGGATCGAAACCTCTCAACGGCTGTGTTGGACTTGTT
GGGCAGCCGTACATTGGGACTTGATTGGGGTCACAAGAAGATTGGTGTAG
CATTGACAGCGGGCTTCAGCCAACGACCTCTGGGTACAATCATCAACGTA
GCGGGTCACAGCAACAACGCAACACGACATCGCCCCACCATTGATCAATT
GTTGGGTATCTTGCGTGCAGAAGGGGCCATTCGAATTGTGATAGGATATC
CACTCTTCCGCGACGGAACTTTAAGCCCTCAGGCAAACGCGACTAAGGTA
TTTGCCCGTATGGTCGCAGATCGCGCCTTGGAAACGGGTGTTATGGCGTC
GGATAGAACCCCATTTGTGTATTTATGGGACGAGCGCTTGACCTCGCAGG
CCGCAAAAGTGAACATAAAGACAAAATCGTTCTTGCACAGCTCTGATGAC
GTGGATTCTCAAGCAGCTTGTCTTATCTTGGAAGACTTTTACAGACATAA
AGGTTACAAAGCGGAGGTAGTGTGGCCAAATCCCTCAATCTTAGGCGAGA
AAACCACCATGGGAGCGACAAATGGGACTCCGCCAGCTGAAAGACGTCCT
TTATCAGGGAGACGCAGAAATGATGACGTTGTCTTTTCACCCAATGTCGC
ATTCACAAGTCGAGCCAATTTCTCGTACGACGAATGGAGACGGGCTGAAC
TTTTGCGCTACGGCCGAGAGTTTCCTGTTGTGTCCCCATCCCATTCTAAA
GACAGCGAAAATGGTGCAGGTACCGGAAAGAAGAAAAAGAAGAGGAAGAA
AAAGAAATAATTGCGTTTTTCTTGCGACACCAGGTGGAGGTGCGGTAGTG
GCAGAGGTGTAAAGCAGGATAAAAGGAACCTGCGGGAAGGTCTCTCCGCT
TTGCTCTAATGAATTGCACATCCTTTGGAAGCAATTATAATAAATGTTAC
CATGTTACCTGGGACTCCTGAATGTTGACGGATTTGTGTATGTGTTGTTT
TGTGAGTATAGATTCTATGATAACCTTTCGTGAGGAAAAAATCAAAAACA
TGCAGATCTGGATCACTCTTCTTTCCGAATTATATCCCTCAGCTTCACGT
GGAAGCGGCTTTACAATCTGATACGTGTGTGTCTTGGAAAGATGCTCCGA
GGGTTTTGCATGGACAGGAAGCCTTGCCCTGCGCCCTGATTACTTCATGA
CGGACATCCTGTTCTGTGTGAAGCAAAGTCTTCCATCAGGGTATCCCACG
CACAAGAGGAAAAGACTTCACCATCTATCAGACAAAAGGAGAGAGAGAGG
TAACGGAAACAACGTCATTGGGATAAGAAATGGCGTTGCCCAAAAAAATA
TCTCTGGCCCCGCCCATACTTTTACACACCAGATGGGTAGTGGCTCTGGG
TGAAGCAGAGGGTATGTGGCCGTCATAATTGATTGATTCTCTGTTTTGAC
TGGGATTCGAGGAGCGTCTCGAAGCTTGTTACACTGTTTTTTTCCAATGA
GCTTTAGACCGGTCAAAAGCCAACGAAGCTGTTTGGCGTGGCCCATCACG
CTTGTCGATTTTTGTACGACCACGTGGGTAAAAAGATGATTAAAGTCCGA
GGCTTTCCATCATGTTGCTGATTAAAGACAGATACTATTTAATTTTTTGG
ATACCGTACGTGTGTGCAATTCATGCCCCTCTGGTTCTGTAGAATGAACA
GGATCATACTGTTAAAATAGTTACGTGTTG

protein sequence of rna6742

>rna6742-protein ID=rna6742-protein|Name=rna6742|organism=Nannochloropsis gaditana|type=polypeptide|length=681bp
MTLSMPCLAPPKKVIEFVAHAGQVNAVTLDRQMHSLVATGGDDNIINVWR
IDNAANLASLKGDSSPVNCLASDPISLRFVAGGYESGAIKIFDVASGKVS
RSLPGHAEGVTCINYDTGAGMLISGSLDTSFKVWDMRTKKCAMHHKGHQS
EVTDAQISPDGRWCCSSGNDGIMNLWDMRNRETIYSFELETTQGQASPIL
HFSFHPTQSTLATYTKDYCIRLFNTDSFELLASPPRRPLDEKCLVGAMVF
DGRGRLLTSTSSRMQILSDSTLETQGTIDAPWTNLQCLSWKDGEILGAAF
DNNIVSLYSITLGTPAESMTPVSITHQKSNNATANGALSPASASLRLKNS
TSPVTSLASLRSSHLSAVALPSVTAEQCARKRLSPSPALPKQSVSQVNNK
DHVATQRAANLTNHGKENKKVSAHMDRDGRATINCAHGTKIACNEMIPID
FIARQDRADGEIIFGTMLHRKVLMTALSVRLENLQRLNELWRAGKVPETF
GLLFRLHQATPEDQGRLTVLSDFLQTVDLLGCASEHGPLSLETAAPLLPV
LNSLLSLDFEGPVLAGIKTLMALLDLLGTHVQQVLRTPLSGLDLTREERV
ERCRKFNEAISYSFKRLEEIRTSNTFKAASPAYLAVERAGRRLESYLAQA
VADWEVWGGRSDQKSNNVQFSGKSLTRTRKR

mRNA from alignment at CM002469.1:392716..395199+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna6742 ID=rna6742|Name=rna6742|organism=Nannochloropsis gaditana|type=mRNA|length=2484bp|location=Sequence derived from alignment at CM002469.1:392716..395199+ (Nannochloropsis gaditana)
GAAGGAATTTGGCGATTCAACTTTTGCCCCCCGCTAGTCGAGCAGGGGAC
GGCGAGTCTTTTTTCACGCACGAATAACCTCgatctccacctcccacgaC
CGCCTATGCATCCATTCTGCGTCCTAATCCATCACCTCTGACCCGTGCCA
GTGCTACAGTTCATTGTCAACGTGAGTGGTTATTGTGGATATCGCAATCT
TCCCAGCCTTGGCGCGAGAATCGGCCAAGAAATACCTTAAATCAGGTGCT
GCGCAAATATACAACAAACGAGGATTGTGCGCAGCTCAATTTTTCTTGCT
TCCGGGAGACGGCCTCGACAGGCAAATTGGTGAACGCTTACTTTCTGAGA
TAGCCTATTGGATCGGTCTTGTGTCTAATCTATGACGCTGTCAATGCCAT
GCCTAGCTCCTCCTAAAAAAGTCATTGAGTTCGTTGCGCATGCTGGGCAG
GTGAATGCCGTAACATTGGACCGCCAAATGCATTCGCTAGTCGCAACGGG
GGGAGATGACAATATCATTAATGTTTGGAGGATAGACAATGCTGCTAACT
TGGCGAGCTTAAAAGGTGACAGTTCCCCCGTCAATTGCCTCGCTTCGGAT
CCCATCTCGCTGCGATTTGTCGCAGGAGGCTATGAGAGTGGTGCCATCAA
AATTTTTGATGTCGCCAGTGGAAAGGTATCGCGCTCTCTCCCAGGTCATG
CAGAAGGGGTTACATGCATTAACTATGACACTGGAGCTGGCATGCTTATT
TCAGGCTCTTTAGACACATCCTTTAAAGTGTGGGATATGCGGACCAAAAA
ATGCGCAATGCATCACAAAGGCCATCAAAGTGAGGTGACTGATGCCCAAA
TATCTCCTGATGGCCGATGGTGTTGCAGCTCAGGAAATGACGGTATTATG
AATTTGTGGGATATGCGAAACCGCGAGACCATCTATTCCTTTGAGTTGGA
AACAACGCAAGGCCAGGCTTCGCCCATCCTTCATTTCAGTTTCCACCCAA
CCCAATCAACTCTCGCCACGTATACGAAGGATTACTGCATTCGACTTTTT
AACACCGATTCATTCGAGCTCCTGGCCAGCCCACCTCGAAGGCCCCTGGA
TGAGAAATGTCTCGTCGGAGCTATGGTTTTCGATGGAAGGGGCCGCCTTT
TGACGTCCACATCGAGTCGTATGCAAATCTTATCTGACTCCACGTTGGAA
ACACAGGGTACTATAGATGCGCCATGGACTAATTTACAGTGTCTTTCCTG
GAAAGACGGCGAAATTCTGGGTGCAGCATTTGATAACAACATTGTTTCGC
TATATTCCATCACCCTTGGGACGCCAGCAGAAAGCATGACTCCAGTGTCG
ATTACGCATCAGAAGTCGAATAACGCTACGGCTAACGGAGCCCTTTCCCC
GGCAAGCGCATCCTTGAGGCTGAAAAACTCAACATCCCCTGTAACAAGCC
TAGCGTCCCTTCGATCATCTCATCTGTccgccgtcgccctcccgtcTGTT
ACTGCGGAGCAGTGTGCGCGCAAAAGAttgtccccttcccctgcgtTGCC
AAAGCAATCTGTATCACAAGTGAACAACAAAGACCATGTGGCAACCCAGA
GGGCAGCCAATCTCACCAACCACGGCAAGGAAAACAAGAAAGTGAGCGCA
CACATGGATCGTGACGGAAGAGCTACTATTAACTGTGCACATGGAACAAA
AATTGCTTGCAATGAAATGATACCTATAGATTTTATTGCGCGTCAAGACC
GTGCAGATGGCGAAATCATTTTTGGCACCATGCTTCATCGCAAAGTGCTT
ATGACTGCCTTGTCCGTACGATTAGAAAATCTTCAACGCTTAAATGAATT
ATGGCGAGCAGGTAAGGTACCTGAAACATTTGGACTCCTTTTTCGGCTCC
ATCAAGCGACGCCGGAAGACCAGGGCCGGCTTACGGTGCTGTCCGACTTC
CTACAGACAGTTGACCTCTTAGGTTGCGCGAGCGAGCACGGACCACTCAG
CTTGGAAACTGCCGCACCGCTCCTGCCCGTTCTAAACAGTCTATTATCGC
TTGACTTCGAAGGTCCCGTCCTTGCGGGAATTAAAACTCTCATGGCCCTT
CTCGATCTCTTAGGCACTCATGTCCAGCAAGTTCTGCGTACTCCGCTGTC
AGGTTTAGATTTGACTAGAGAGGAGCGCGTTGAAAGATGCCGCAAATTCA
ATGAGGCCATCAGCTATAGCTTTAAGCGCCTCGAAGAAATTCGTACATCA
AATACGTTTAAGGCGGCCTCACCAGCCTATCTTGCTgtggagagggcggg
aaggcgatTGGAATCCTACTTAGCACAGGCTGTTGCGGACTGGGAAGTAT
GGGGTGGGCGCTCAGATCAAAAGTCCAATAATGTGCAGTTTTCTGGAAAA
AGCTTGACTCGTACAAGAAAGCGATGACGCGTCGAAAATTTAAATAAGAA
AAGCAAGAGCATTTTAAGTATTTGAGCACCACTA

Coding sequence (CDS) from alignment at CM002469.1:392716..395199+

>rna6742 ID=rna6742|Name=rna6742|organism=Nannochloropsis gaditana|type=CDS|length=2046bp|location=Sequence derived from alignment at CM002469.1:392716..395199+ (Nannochloropsis gaditana)
ATGACGCTGTCAATGCCATGCCTAGCTCCTCCTAAAAAAGTCATTGAGTT
CGTTGCGCATGCTGGGCAGGTGAATGCCGTAACATTGGACCGCCAAATGC
ATTCGCTAGTCGCAACGGGGGGAGATGACAATATCATTAATGTTTGGAGG
ATAGACAATGCTGCTAACTTGGCGAGCTTAAAAGGTGACAGTTCCCCCGT
CAATTGCCTCGCTTCGGATCCCATCTCGCTGCGATTTGTCGCAGGAGGCT
ATGAGAGTGGTGCCATCAAAATTTTTGATGTCGCCAGTGGAAAGGTATCG
CGCTCTCTCCCAGGTCATGCAGAAGGGGTTACATGCATTAACTATGACAC
TGGAGCTGGCATGCTTATTTCAGGCTCTTTAGACACATCCTTTAAAGTGT
GGGATATGCGGACCAAAAAATGCGCAATGCATCACAAAGGCCATCAAAGT
GAGGTGACTGATGCCCAAATATCTCCTGATGGCCGATGGTGTTGCAGCTC
AGGAAATGACGGTATTATGAATTTGTGGGATATGCGAAACCGCGAGACCA
TCTATTCCTTTGAGTTGGAAACAACGCAAGGCCAGGCTTCGCCCATCCTT
CATTTCAGTTTCCACCCAACCCAATCAACTCTCGCCACGTATACGAAGGA
TTACTGCATTCGACTTTTTAACACCGATTCATTCGAGCTCCTGGCCAGCC
CACCTCGAAGGCCCCTGGATGAGAAATGTCTCGTCGGAGCTATGGTTTTC
GATGGAAGGGGCCGCCTTTTGACGTCCACATCGAGTCGTATGCAAATCTT
ATCTGACTCCACGTTGGAAACACAGGGTACTATAGATGCGCCATGGACTA
ATTTACAGTGTCTTTCCTGGAAAGACGGCGAAATTCTGGGTGCAGCATTT
GATAACAACATTGTTTCGCTATATTCCATCACCCTTGGGACGCCAGCAGA
AAGCATGACTCCAGTGTCGATTACGCATCAGAAGTCGAATAACGCTACGG
CTAACGGAGCCCTTTCCCCGGCAAGCGCATCCTTGAGGCTGAAAAACTCA
ACATCCCCTGTAACAAGCCTAGCGTCCCTTCGATCATCTCATCTGTccgc
cgtcgccctcccgtcTGTTACTGCGGAGCAGTGTGCGCGCAAAAGAttgt
ccccttcccctgcgtTGCCAAAGCAATCTGTATCACAAGTGAACAACAAA
GACCATGTGGCAACCCAGAGGGCAGCCAATCTCACCAACCACGGCAAGGA
AAACAAGAAAGTGAGCGCACACATGGATCGTGACGGAAGAGCTACTATTA
ACTGTGCACATGGAACAAAAATTGCTTGCAATGAAATGATACCTATAGAT
TTTATTGCGCGTCAAGACCGTGCAGATGGCGAAATCATTTTTGGCACCAT
GCTTCATCGCAAAGTGCTTATGACTGCCTTGTCCGTACGATTAGAAAATC
TTCAACGCTTAAATGAATTATGGCGAGCAGGTAAGGTACCTGAAACATTT
GGACTCCTTTTTCGGCTCCATCAAGCGACGCCGGAAGACCAGGGCCGGCT
TACGGTGCTGTCCGACTTCCTACAGACAGTTGACCTCTTAGGTTGCGCGA
GCGAGCACGGACCACTCAGCTTGGAAACTGCCGCACCGCTCCTGCCCGTT
CTAAACAGTCTATTATCGCTTGACTTCGAAGGTCCCGTCCTTGCGGGAAT
TAAAACTCTCATGGCCCTTCTCGATCTCTTAGGCACTCATGTCCAGCAAG
TTCTGCGTACTCCGCTGTCAGGTTTAGATTTGACTAGAGAGGAGCGCGTT
GAAAGATGCCGCAAATTCAATGAGGCCATCAGCTATAGCTTTAAGCGCCT
CGAAGAAATTCGTACATCAAATACGTTTAAGGCGGCCTCACCAGCCTATC
TTGCTgtggagagggcgggaaggcgatTGGAATCCTACTTAGCACAGGCT
GTTGCGGACTGGGAAGTATGGGGTGGGCGCTCAGATCAAAAGTCCAATAA
TGTGCAGTTTTCTGGAAAAAGCTTGACTCGTACAAGAAAGCGATGA

Synonyms

Publications