EWM23965.1, cds6726 (CDS) Nannochloropsis gaditana

Overview
NameEWM23965.1
Unique Namecds6726
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002469.1:393097..395142 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM23965.1
Productkatanin p80 wd40 repeat-containing subunit b1 -like protein
Orig transcript idgnl|cribi|Naga_100027g51.143.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002469.1supercontigCM002469.1:393097..395142 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0016043cellular component organization
GO:0051013microtubule severing
Vocabulary: Cellular Component
TermDefinition
GO:0005856cytoskeleton
GO:0008352katanin complex
Vocabulary: Molecular Function
TermDefinition
GO:0008017microtubule binding
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR017986WD40_repeat_dom
IPR019775WD40_repeat_CS
IPR026962Katanin_bsu1
IPR028021Katanin_C-terminal
IPR015943WD40/YVTN_repeat-like_dom
IPR001680WD40_repeat
Homology
BLAST of EWM23965.1 vs. NCBI_GenBank
Match: gi|585105251|gb|EWM23965.1| (katanin p80 wd40 repeat-containing subunit b1 -like protein [Nannochloropsis gaditana])

HSP 1 Score: 1410.59 bits (3650), Expect = 0.000e+0
Identity = 681/681 (100.00%), Postives = 681/681 (100.00%), Query Frame = 0
Query:    1 MTLSMPCLAPPKKVIEFVAHAGQVNAVTLDRQMHSLVATGGDDNIINVWRIDNAANLASLKGDSSPVNCLASDPISLRFVAGGYESGAIKIFDVASGKVSRSLPGHAEGVTCINYDTGAGMLISGSLDTSFKVWDMRTKKCAMHHKGHQSEVTDAQISPDGRWCCSSGNDGIMNLWDMRNRETIYSFELETTQGQASPILHFSFHPTQSTLATYTKDYCIRLFNTDSFELLASPPRRPLDEKCLVGAMVFDGRGRLLTSTSSRMQILSDSTLETQGTIDAPWTNLQCLSWKDGEILGAAFDNNIVSLYSITLGTPAESMTPVSITHQKSNNATANGALSPASASLRLKNSTSPVTSLASLRSSHLSAVALPSVTAEQCARKRLSPSPALPKQSVSQVNNKDHVATQRAANLTNHGKENKKVSAHMDRDGRATINCAHGTKIACNEMIPIDFIARQDRADGEIIFGTMLHRKVLMTALSVRLENLQRLNELWRAGKVPETFGLLFRLHQATPEDQGRLTVLSDFLQTVDLLGCASEHGPLSLETAAPLLPVLNSLLSLDFEGPVLAGIKTLMALLDLLGTHVQQVLRTPLSGLDLTREERVERCRKFNEAISYSFKRLEEIRTSNTFKAASPAYLAVERAGRRLESYLAQAVADWEVWGGRSDQKSNNVQFSGKSLTRTRKR 681
            MTLSMPCLAPPKKVIEFVAHAGQVNAVTLDRQMHSLVATGGDDNIINVWRIDNAANLASLKGDSSPVNCLASDPISLRFVAGGYESGAIKIFDVASGKVSRSLPGHAEGVTCINYDTGAGMLISGSLDTSFKVWDMRTKKCAMHHKGHQSEVTDAQISPDGRWCCSSGNDGIMNLWDMRNRETIYSFELETTQGQASPILHFSFHPTQSTLATYTKDYCIRLFNTDSFELLASPPRRPLDEKCLVGAMVFDGRGRLLTSTSSRMQILSDSTLETQGTIDAPWTNLQCLSWKDGEILGAAFDNNIVSLYSITLGTPAESMTPVSITHQKSNNATANGALSPASASLRLKNSTSPVTSLASLRSSHLSAVALPSVTAEQCARKRLSPSPALPKQSVSQVNNKDHVATQRAANLTNHGKENKKVSAHMDRDGRATINCAHGTKIACNEMIPIDFIARQDRADGEIIFGTMLHRKVLMTALSVRLENLQRLNELWRAGKVPETFGLLFRLHQATPEDQGRLTVLSDFLQTVDLLGCASEHGPLSLETAAPLLPVLNSLLSLDFEGPVLAGIKTLMALLDLLGTHVQQVLRTPLSGLDLTREERVERCRKFNEAISYSFKRLEEIRTSNTFKAASPAYLAVERAGRRLESYLAQAVADWEVWGGRSDQKSNNVQFSGKSLTRTRKR
Sbjct:    1 MTLSMPCLAPPKKVIEFVAHAGQVNAVTLDRQMHSLVATGGDDNIINVWRIDNAANLASLKGDSSPVNCLASDPISLRFVAGGYESGAIKIFDVASGKVSRSLPGHAEGVTCINYDTGAGMLISGSLDTSFKVWDMRTKKCAMHHKGHQSEVTDAQISPDGRWCCSSGNDGIMNLWDMRNRETIYSFELETTQGQASPILHFSFHPTQSTLATYTKDYCIRLFNTDSFELLASPPRRPLDEKCLVGAMVFDGRGRLLTSTSSRMQILSDSTLETQGTIDAPWTNLQCLSWKDGEILGAAFDNNIVSLYSITLGTPAESMTPVSITHQKSNNATANGALSPASASLRLKNSTSPVTSLASLRSSHLSAVALPSVTAEQCARKRLSPSPALPKQSVSQVNNKDHVATQRAANLTNHGKENKKVSAHMDRDGRATINCAHGTKIACNEMIPIDFIARQDRADGEIIFGTMLHRKVLMTALSVRLENLQRLNELWRAGKVPETFGLLFRLHQATPEDQGRLTVLSDFLQTVDLLGCASEHGPLSLETAAPLLPVLNSLLSLDFEGPVLAGIKTLMALLDLLGTHVQQVLRTPLSGLDLTREERVERCRKFNEAISYSFKRLEEIRTSNTFKAASPAYLAVERAGRRLESYLAQAVADWEVWGGRSDQKSNNVQFSGKSLTRTRKR 681          
BLAST of EWM23965.1 vs. NCBI_GenBank
Match: gi|593792468|ref|XP_007159273.1| (hypothetical protein PHAVU_002G224100g [Phaseolus vulgaris] >gi|561032688|gb|ESW31267.1| hypothetical protein PHAVU_002G224100g [Phaseolus vulgaris])

HSP 1 Score: 197.593 bits (501), Expect = 6.690e-51
Identity = 172/652 (26.38%), Postives = 285/652 (43.71%), Query Frame = 0
Query:   13 KVIEFVAHAGQVNAVTLDRQMHSLVATGGDDNIINVWRIDNAANLASLKGDSSPVNCLASDPISLRFVAGGYESGAIKIFDVASGKVSRSLPGHAEGVTCINYDTGAGMLISGSLDTSFKVWDMRTKKCAMHHKGHQSEVTDAQISPDGRWCCSSGNDGIMNLWDMRNRETIYSFELETTQGQASPILHFSFHPTQSTLATYTKDYCIRLFNTDSFELLASPPRRPLDEKCLVGAMVFDGRGR-LLTSTSSRMQILSDSTLETQGTIDAPWTNLQCLSWKDGEILGAAFDNNIVSLY--SITLGTPA----ESMTPVSITHQ-----KSNNATANG-------ALSPASASLRLKN-------------STSPVTSLASLRSSHLSAVALPSVTAEQCARKRLSPSPALPKQSV--SQVNNKDHVATQRAAN-----LTNHGKENKKVSAHMDRDGRATI-NCAHGTKIACNEMIPIDFIARQDRA-DGEIIFGTMLHRKVLMTALSVRLENLQRLNELWRAGKVPETFGLLFRL-HQATPEDQGRLTVLSDFLQTVDLLGCASEHGPLSLETAAPLLPVLNSLLSLDFEGPVLAGIKTLMALLDLLGTHVQQVLRTPLS-GLDLTREERVERCRKFNEAISYSFKRLEEIR 621
            K+ EFVAH+G VN + + R+ + L  TGGDD  +N+W I  A +L SL G +S V  +  D   +  V  G  SG IK++D+   K+ R+L GH    T + +        SGSLDT+  +WD+R K C   +K H   ++  + SPDGRW  S G D ++ +WD+   + ++ F+          I    FHP +  LAT + D  ++ ++ ++FEL+ S       E   V ++ F   GR L       +++ S   +     +D  WT L  L   DG++LG +F +N V ++   I+L  P     E+    S  H+     +       G       ++SP + S  +KN               SPV  +  + +S     +L     E+  RK ++P+      +   +   N++++  +   N      T+  ++ + +    D+    T+ N    T    N  +  +F    + A DGEII G M      ++ L  RL  LQ +   W +  +      L +L  Q+   D   + V    + T+DL  C              LLPVL  L+    E  V   +  L+ L+ + G  ++  +  P S G+DL  E+R        E  +  F +L++IR
Sbjct:    7 KLQEFVAHSGNVNCLKIGRKANRLFITGGDDYNVNLWMIGKATSLISLCGHTSTVESVTFDSAEV-LVLSGASSGVIKLWDLEEAKMLRTLTGHRSNCTAVEFHPFGEFFASGSLDTNLNIWDIRKKGCIHTYKDHSQGISTIKFSPDGRWVVSGGFDNVVKVWDLTGGKLLHDFKY-----HEGHIRSLDFHPLEFLLATGSADRTVKFWDLETFELIGSSRH----EVSGVRSITFHPDGRTLFAGLEDSLKVYSWEPVICHDAVDMGWTTLGDLCIHDGKLLGCSFYSNSVGVWVSDISLIKPYGGGLETEKKESTEHKLSLQGRQMEKIEYGVGTFGLCSVSPDNESKEIKNIYIDCNQSSSYSKVISPVKYVNGVATSQGRTRSL----VERFERKEITPTKEDQDNATPTTTFENRENILKEDQTNASPITTTSTSEKGEIIPFSEDKKNMPTVPNTTSETDKPTN-FLKAEFGRSSNSANDGEIIEGLMQIHDATVSNLRSRLTKLQVVRHFWESNDIKGAISALRKLADQSVQADVISVLVEKMEIFTLDLFSC--------------LLPVLTGLVDSKIERHVKVSLDMLLKLVVVFGPTIRSTISAPPSVGVDLHGEQR-------RECSNQCFMQLQKIR 622          
BLAST of EWM23965.1 vs. NCBI_GenBank
Match: gi|302782379|ref|XP_002972963.1| (hypothetical protein SELMODRAFT_98102, partial [Selaginella moellendorffii] >gi|300159564|gb|EFJ26184.1| hypothetical protein SELMODRAFT_98102, partial [Selaginella moellendorffii])

HSP 1 Score: 187.193 bits (474), Expect = 9.002e-50
Identity = 106/301 (35.22%), Postives = 162/301 (53.82%), Query Frame = 0
Query:   13 KVIEFVAHAGQVNAVTLDRQMHSLVATGGDDNIINVWRIDNAANLASLKGDSSPVNCLASDPISLRFVAGGYESGAIKIFDVASGKVSRSLPGHAEGVTCINYDTGAGMLISGSLDTSFKVWDMRTKKCAMHHKGHQSEVTDAQISPDGRWCCSSGNDGIMNLWDMRNRETIYSFELETTQGQASPILHFSFHPTQSTLATYTKDYCIRLFNTDSFELLASPPRRPLDEKCLVGAMVFDGRGR-LLTSTSSRMQILSDSTLETQGTIDAPWTNLQCLSWKDGEILGAAFDNNIVSLYSITL 312
            K+ EFVAH+ QVN + + R+   ++ TGGDD+ +N+W I     + SL G SSPV  +  D      VAG   SGAIK++D+   K+ R+L GH    T +++        SGSLD++ K+WD+R K C   ++GH   V   + SPDGRW  S G D  + LWD+   + I+ F+    Q     IL   FHP +  LAT + D   + ++ ++FEL+ S    P D    V  M+F   GR LL +    +++ S   L     IDA W+ L  L+  +G++LG +F+ + V ++ + L
Sbjct:    7 KLQEFVAHSSQVNCLKIGRKTSRVLVTGGDDHKVNMWAIGKPNAILSLAGHSSPVESVTFDAAESHVVAGA-ASGAIKLWDLEEAKIVRTLTGHRSNCTAVDFHPFGEFFASGSLDSNLKIWDIRRKGCIHTYRGHCCGVNCLKFSPDGRWVVSGGEDKTVKLWDLTAGKLIHDFKYHDDQ-----ILSLDFHPHEFLLATGSDDKTAKFYDLETFELVGSSG--PEDSG--VRPMIFTPDGRTLLCALREGLKVYSWEPLRCHDVIDANWSRLADLNVHEGKLLGCSFNQSCVGVWVVDL 297          
BLAST of EWM23965.1 vs. NCBI_GenBank
Match: gi|168031665|ref|XP_001768341.1| (predicted protein [Physcomitrella patens] >gi|162680519|gb|EDQ66955.1| predicted protein, partial [Physcomitrella patens])

HSP 1 Score: 183.341 bits (464), Expect = 1.126e-48
Identity = 100/308 (32.47%), Postives = 162/308 (52.60%), Query Frame = 0
Query:   16 EFVAHAGQVNAVTLDRQMHSLVATGGDDNIINVWRIDNAANLASLKGDSSPVNCLASDPISLRFVAGGYESGAIKIFDVASGKVSRSLPGHAEGVTCINYDTGAGMLISGSLDTSFKVWDMRTKKCAMHHKGHQSEVTDAQISPDGRWCCSSGNDGIMNLWDMRNRETIYSFELETTQGQASPILHFSFHPTQSTLATYTKDYCIRLFNTDSFELLASPPRRPLDEKCLVGAMVFDGRGR-LLTSTSSRMQILSDSTLETQGTIDAPWTNLQCLSWKDGEILGAAFDNNIVSLYSITLGTPAESMTPV 322
            EFVAH+  VN + + ++   ++ TGG+D+ +N+W I     + SL G +S V  +A D   +  VAG   SG IK++D+   K+ R+L GH      +++        SGSLDT+ K+WD+R K C   +KGH   +   + SPDGRW  S G D ++ LWD+   + ++ F+    Q Q        FHP +  LAT + D  ++ F+ ++FEL+ S       +   V AMVF+  GR +LT+    +++ S   L     +D  W  L  LS  +G++LG +F+ + V ++ + L      + PV
Sbjct:    5 EFVAHSSNVNCLKIGKKSSRVLVTGGEDHKVNMWAIGKPNAILSLAGHTSAVESVAFDASEVVVVAGA-ASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRRKGCIHTYKGHTRGINSIKFSPDGRWVVSGGEDNVVKLWDLTAGKLMHDFKYHEGQVQC-----LDFHPHEFLLATGSADRTVKFFDLETFELIGSAG----PDSAGVRAMVFNPDGRTVLTAMQDSLKVFSWEPLRCHDMVDVGWHKLADLSIHEGKLLGCSFNQSCVGVWVVDLQVNGFLLLPV 302          
BLAST of EWM23965.1 vs. NCBI_GenBank
Match: gi|1142652291|gb|AQK47277.1| (Katanin p80 WD40 repeat-containing subunit B1-like protein [Zea mays])

HSP 1 Score: 184.882 bits (468), Expect = 2.887e-48
Identity = 99/301 (32.89%), Postives = 161/301 (53.49%), Query Frame = 0
Query:   13 KVIEFVAHAGQVNAVTLDRQMHSLVATGGDDNIINVWRIDNAANLASLKGDSSPVNCLASDPISLRFVAGGYESGAIKIFDVASGKVSRSLPGHAEGVTCINYDTGAGMLISGSLDTSFKVWDMRTKKCAMHHKGHQSEVTDAQISPDGRWCCSSGNDGIMNLWDMRNRETIYSFELETTQGQASPILHFSFHPTQSTLATYTKDYCIRLFNTDSFELLASPPRRPLDEKCLVGAMVFDGRGR-LLTSTSSRMQILSDSTLETQGTIDAPWTNLQCLSWKDGEILGAAFDNNIVSLYSITL 312
            K+ EFVAHA  VN + + R+   ++ TGG+D+ +N+W I    ++ SL G +S V  +  D   + FVA G  SG IK++D+   K+ R+L GH      +++        SGSLDT+ K+WD+R K C   +KGH   V   + +PDGRW  S G D I+ LWD+   + ++ F+    Q Q        FHP +  LAT + D  ++ ++ ++FEL+ S       E   V +M F+  GR LL      +++ S   +    T+D  W+ L  L+  +G++LG +F+ + V ++ + L
Sbjct:   10 KLQEFVAHASNVNCLKIGRKTSRVLVTGGEDHKVNLWAIGKPNSILSLSGHTSAVESVGFDSTEV-FVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCMSVDFHPFGEFFASGSLDTNLKIWDIRRKNCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNIVKLWDLTAGKLLHEFKCHEGQIQC-----IDFHPHEFLLATGSADKTVKFWDLETFELIGSTG----PETTGVRSMTFNPDGRTLLCGLHESLKVFSWEPIRCHDTVDVGWSRLADLNVHEGKLLGCSFNQSCVGIWVVDL 300          
BLAST of EWM23965.1 vs. NCBI_GenBank
Match: gi|1142652782|gb|ONM12104.1| (Katanin p80 WD40 repeat-containing subunit B1-like protein [Zea mays])

HSP 1 Score: 183.341 bits (464), Expect = 5.156e-48
Identity = 98/301 (32.56%), Postives = 161/301 (53.49%), Query Frame = 0
Query:   13 KVIEFVAHAGQVNAVTLDRQMHSLVATGGDDNIINVWRIDNAANLASLKGDSSPVNCLASDPISLRFVAGGYESGAIKIFDVASGKVSRSLPGHAEGVTCINYDTGAGMLISGSLDTSFKVWDMRTKKCAMHHKGHQSEVTDAQISPDGRWCCSSGNDGIMNLWDMRNRETIYSFELETTQGQASPILHFSFHPTQSTLATYTKDYCIRLFNTDSFELLASPPRRPLDEKCLVGAMVFDGRGR-LLTSTSSRMQILSDSTLETQGTIDAPWTNLQCLSWKDGEILGAAFDNNIVSLYSITL 312
            K+ EFVAH+  VN + + R+   ++ TGG+D+ +N+W I    ++ SL G +S V  +  D   + FVA G  SG IK++D+   K+ R+L GH      +++        SGSLDT+ K+WD+R K C   +KGH   V   + +PDGRW  S G D I+ LWD+   + ++ F+    Q Q        FHP +  LAT + D  ++ ++ ++FEL+ S       E   V +M F+  GR LL      +++ S   +    T+D  W+ L  L+  +G++LG +F+ + V ++ + L
Sbjct:   10 KLQEFVAHSSNVNCLKIGRKTSRVLVTGGEDHKVNLWAIGKPNSILSLSGHTSAVESVGFDSTEV-FVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCMSVDFHPFGEFFASGSLDTNLKIWDIRRKNCIHTYKGHTRGVNTIRFTPDGRWVVSGGEDNIVKLWDLTAGKLLHEFKCHEGQIQC-----IDFHPHEFLLATGSADKTVKFWDLETFELIGSTG----PETTGVRSMTFNPDGRSLLCGLHESLKVFSWEPIRCHDTVDVGWSRLADLNVHEGKLLGCSFNQSCVGIWVVDL 300          
BLAST of EWM23965.1 vs. NCBI_GenBank
Match: gi|635362413|emb|CCI10445.1| (unnamed protein product [Albugo candida])

HSP 1 Score: 188.348 bits (477), Expect = 6.422e-48
Identity = 170/619 (27.46%), Postives = 272/619 (43.94%), Query Frame = 0
Query:   17 FVAHAGQVNAVTLDRQMHSLVATGGDDNIINVWRIDN--AANLASLKGDSSPVNCLASDPISLRFVAGGYESGAIKIFDVASGKVSRSLPGHAEGVTCINYDTGAGMLISGSLDTSFKVWDMRTKKCAMHHKGHQSEVTDAQISPDGRWCCSSGNDGIMNLWDMRNRETIYSFELETTQGQASPILHFSFHPTQSTLATYTKDYCIRLFNTDSFELLASPPRRPLDEKCLVGAMVFDGRGRLLTSTS-------SRMQILSDSTL----ETQGT--IDAPWTNLQCLSWKDGEILGAAFDNNIVSLYSITLG--TPAESMTPVSITHQKSN-NATANGALS-PASASLRLKNSTSPVTSLASLRSSHLSAVALPS--VTAEQCARKRL-----SPSPALPKQSVSQVNNKD-HVATQRAANLTNHGKENKKVSAHMDRDGRATINCAHGTKIACNEMIPIDFIARQDRADGEIIFGTMLHRKVLMTALSVRLENLQRLNELWRAGKVPETFGLLFRLHQATPEDQGRLTVLSDFLQTVDLLGCASEHGPLSLETAAPLLPVLNSLLSLDFEGPVLAGIKTLMALLDLLGTHVQQVLRTPL---SGLDLTREERVERCRK 605
            F+AH+  VN      +   + A+GGDD  +N+WR+      NL SL G +S +N L  DP   + +AG  ESG+IK FD+ +GKVSR+L GH    TC+++      + SGSLDT  K+WDMRTK C    +GH+SE+T    +PDGRW  S  +DG + +WD+   + +  F     +  +  I    F+P +  L + + D  +R+++   F  +   P        +   +V    G+ +   S       S  Q L         ET G   +D+P   +      D +++GA+  +  +S++ + L   +P       S +   SN + T N AL    S +LR+K+       +   RS+  +A  LP    T E C R+RL     S S AL    +   +NKD H+                 V  H ++D   +            E  P+  + R      E I       +  +     RL+ ++++  +W  G V ET G + +L  +  E      +L D L+  D +        + +E    LLP++  ++   FE  V  G+     L+D   + VQ+ + T       +DL  EER  RC K
Sbjct:    6 FLAHSSTVNCFRFGPRSAQIAASGGDDQNVNIWRLREMETKNLMSLGGHASAINALVFDPNETKVIAGS-ESGSIKSFDLEAGKVSRTLKGHMSTCTCLDHHLYGDYIASGSLDTIVKIWDMRTKSCMQIFRGHRSEITKLTFTPDGRWLTSGDSDGSIRIWDLTAGKQLKEF-----RDHSGAITALEFNPEEFILVSASADKSVRIWDVQDFSFVGVTPSDTAITTSISHTLVEPYSGKFIACCSHDFIRLWSYEQALECHDCLPFHETNGVAHVDSPTDTIMT---HDSKLMGASMQDAFISIWILELAAFSPFRRERASSASSTTSNFDKTTNLALPIKPSRALRVKHEVDHAFRMR--RSADNNAQVLPEGPKTPEVC-RRRLPHAQSSESIALHALRIETNSNKDIHIP----------------VPPHSNQDPSPS-----------KEPTPM-LLLRVSNQSIEFIVELRSGMETNIKLFQSRLKCMKQILNIWSKGSVHETLGYIEKLPSSKRE-----PILVDILRLDDTVKFG-----VDIEACCILLPLITDMIQSKFEAYVAVGLSYAQKLVDGFRSIVQESIGTSQLRSREVDLAAEERARRCEK 574          
BLAST of EWM23965.1 vs. NCBI_GenBank
Match: gi|1149787325|ref|XP_020155607.1| (katanin p80 WD40 repeat-containing subunit B1 homolog isoform X2 [Aegilops tauschii subsp. tauschii])

HSP 1 Score: 189.119 bits (479), Expect = 7.330e-48
Identity = 157/654 (24.01%), Postives = 286/654 (43.73%), Query Frame = 0
Query:   13 KVIEFVAHAGQVNAVTLDRQMHSLVATGGDDNIINVWRIDNAANLASLKGDSSPVNCLASDPISLRFVAGGYESGAIKIFDVASGKVSRSLPGHAEGVTCINYDTGAGMLISGSLDTSFKVWDMRTKKCAMHHKGHQSEVTDAQISPDGRWCCSSGNDGIMNLWDMRNRETIYSFELETTQGQASPILHFSFHPTQSTLATYTKDYCIRLFNTDSFELLASPPRRPLDEKCL----VGAMVFDGRGR-LLTSTSSRMQILSDSTLETQGTIDAPWTNLQCLSWKDGEILGAAFDNNIVSLYSITLGTPAESMTPVSITHQKSN-NATANG----------ALSPASASLRLKNSTSPVTSLASLRSSHLSAVALPSVTAEQCARKRLSPSPALPKQSVSQVNNKDHVA--TQRAANLTNHGKE---NKKVSAHMDRDGR-----ATINCAHGTKIAC-----NEMIPIDFIARQDRADGE---------IIFGTMLHRKVLMTALSVRLENLQRLNELWRAGKVPETFGLLFRL--HQATPEDQGRLTVLSDFLQTVDLLGCASEHGPLSLETAAPLLPVLNSLLSLDFEGPVLAGIKTLMALLDLLGTHVQQVL-RTPLSGLDLTREERVERCRKFNEAISYSFKRLEEIRTS 623
            K+ EFVAHA  V      ++    + TGG+D  +N+W +   + + SL G +SPV  L+ D   +  +  G  +G IKI+D+   KV R+  GH      ++         SGS DT+ K+WDMR K+C   ++GH   +   + +PDGRW  S G D  + +WD+   + ++ F L        PI    FHP +  LAT + D  ++ ++ ++FEL+ S       E  +    V +M F+  G+ L       +++LS   +     +D  W+ L  L+ ++G++LG +++ + V ++ + L        P ++   ++  N T NG           L   S S R + + +P ++L     S     ++P  +A    RKRLS +P +    +++  +   ++   +   N T+H K    N +    +    R     ++ + + GT   C     +E  P     RQ    GE         +I   M + +  +  +  RL  L+ +   W+   +  +   + R+  H  T +              +++L        ++L+    +LP+ ++LL   ++  +   + T++ L+      +   L  TP   +DL  E R+ERC       S  F+ LE+I  S
Sbjct:    8 KLQEFVAHASDVTCAKFGKRTSRTLITGGEDQKVNLWAVGKPSAVLSLSGHTSPVESLSFDSSEV-MIGAGAATGTIKIWDIKEAKVVRTFTGHRSNCASLDSHPFGEFFASGSSDTNMKIWDMRKKRCIHTYQGHTGRIDVLRFTPDGRWIVSGGADSSVKIWDLTAGKLLHDFRL-----HEGPINCLDFHPHEFLLATGSADKTVKFWDLETFELIGSSGPENYREYYMPASVVRSMTFNSDGKALFCGLHENLKVLSWEPIICHDAVDVGWSTLADLNVQEGKLLGCSYNQSCVGIWVVDL----MKFDPYTVGSAEAFWNGTGNGPLQADNSISSMLGSLSISRRPEANETPSSTLLKRPMSMSKETSVPVSSA---VRKRLSKAPGINNLRLTRAESAPLLSPRVRLKPNSTDHQKRHIANVRFKVDLSTSARMIAGLSSCSLSGGTGHLCASYERSEYAPTSDGLRQSSFAGERSASANDDDLIADLMQNHQEFIHGVKSRLTKLELVYRCWQNNDIKGSVSAMRRMSDHAVTAD-------------IINVLIMEKSTKYITLDICTSVLPLASNLLESGYDRHLNVALATILNLVKSFRASIFSTLSSTPPVCVDLEAEHRLERC-------SICFQELEKINAS 628          
BLAST of EWM23965.1 vs. NCBI_GenBank
Match: gi|1142652772|gb|ONM12094.1| (Katanin p80 WD40 repeat-containing subunit B1-like protein [Zea mays])

HSP 1 Score: 183.341 bits (464), Expect = 9.964e-48
Identity = 98/301 (32.56%), Postives = 161/301 (53.49%), Query Frame = 0
Query:   13 KVIEFVAHAGQVNAVTLDRQMHSLVATGGDDNIINVWRIDNAANLASLKGDSSPVNCLASDPISLRFVAGGYESGAIKIFDVASGKVSRSLPGHAEGVTCINYDTGAGMLISGSLDTSFKVWDMRTKKCAMHHKGHQSEVTDAQISPDGRWCCSSGNDGIMNLWDMRNRETIYSFELETTQGQASPILHFSFHPTQSTLATYTKDYCIRLFNTDSFELLASPPRRPLDEKCLVGAMVFDGRGR-LLTSTSSRMQILSDSTLETQGTIDAPWTNLQCLSWKDGEILGAAFDNNIVSLYSITL 312
            K+ EFVAH+  VN + + R+   ++ TGG+D+ +N+W I    ++ SL G +S V  +  D   + FVA G  SG IK++D+   K+ R+L GH      +++        SGSLDT+ K+WD+R K C   +KGH   V   + +PDGRW  S G D I+ LWD+   + ++ F+    Q Q        FHP +  LAT + D  ++ ++ ++FEL+ S       E   V +M F+  GR LL      +++ S   +    T+D  W+ L  L+  +G++LG +F+ + V ++ + L
Sbjct:   10 KLQEFVAHSSNVNCLKIGRKTSRVLVTGGEDHKVNLWAIGKPNSILSLSGHTSAVESVGFDSTEV-FVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCMSVDFHPFGEFFASGSLDTNLKIWDIRRKNCIHTYKGHTRGVNTIRFTPDGRWVVSGGEDNIVKLWDLTAGKLLHEFKCHEGQIQC-----IDFHPHEFLLATGSADKTVKFWDLETFELIGSTG----PETTGVRSMTFNPDGRSLLCGLHESLKVFSWEPIRCHDTVDVGWSRLADLNVHEGKLLGCSFNQSCVGIWVVDL 300          
BLAST of EWM23965.1 vs. NCBI_GenBank
Match: gi|743826494|ref|XP_010933311.1| (PREDICTED: katanin p80 WD40 repeat-containing subunit B1 homolog isoform X5 [Elaeis guineensis])

HSP 1 Score: 186.422 bits (472), Expect = 4.709e-47
Identity = 177/648 (27.31%), Postives = 300/648 (46.30%), Query Frame = 0
Query:   13 KVIEFVAHAGQVNAVTLDRQMHSLVATGGDDNIINVWRIDNAANLASLKGDSSPVNCLASDPISLRFVAGGYESGAIKIFDVASGKVSRSLPGHAEGVTCINYDTGAGMLISGSLDTSFKVWDMRTKKCAMHHKGHQSEVTDAQISPDGRWCCSSGNDGIMNLWDMRNRETIYSFELETTQGQASPILHFSFHPTQSTLATYTKDYCIRLFNTDSFELLASPPRRPLDEKCLVGAMVFDGRGR-LLTSTSSRMQILSDSTLETQGTIDAPWTNLQCLSWKDGEILGAAFDNNIVSLY--SITLGTP-AESMTPVSITH--QKSNNATANGALSPASASLRLKNSTSPVTSLASLRSS--HLSAVALPSVTAEQCARKRLSPSPALPKQ---SVSQV----NNKDHVAT-QRAANLTNHGKENKKVSAHMDRDGRATINCAHGTKIACNEMIPIDFIARQDR---ADGEIIFGTMLHRKVLMTALSVRLENLQRLNELWRAGKVPETFGLLFRL--HQATPEDQGRLTVLSDFLQTVDLLGCASEHGPLSLETAAPLLPVLNSLLSLDFEGPVLAGIKTLMALLDLLGTHVQQVLR-TPLSGLDLTREERVERCRK-FNEAISYSFKRLEEIRTSNTFKAASPAYLAVE 637
            K+ EFVAH   VN + + R+   ++ TGG+D+ +N+W I     + SL G +S V  ++ D  S   +A G  SG IK++D+   KV R+L GH      I++      + SGS DT+ K+WD+R K C   +KGH   V   + +PDGRW  S G D I+ LWD+   + ++ F+    Q Q        FHP +  LAT + D  ++ ++ ++FE++ S     + E   V +M F+  GR L       +++LS   +     +D  W+ L  L+  +G+++G +++ + V ++   I+   P A S    S  H   +SN  +     + +S    +  S++  TS+ S+++S   LS        AE+   K L+  P + KQ   S ++V      +  VA+ +R  +  N+  E  K S  ++    ++I+    T   C         ARQ+    +D + I   M   K  +T+   RL  LQ + +LW    V      + ++  H  + +    L  +SD + T+DL           LE+       ++   S+  E         L+ L+ + G  +   L   P  G+DL  EER+E+C+  F E     F++++ I  S T +  S A  A E
Sbjct:    9 KLQEFVAHDSNVNCLKIGRKTSRVLVTGGEDHKVNLWAIGKPNTILSLSGHTSAVESVSLDS-SEVLLAAGAASGTIKLWDLGEAKVVRTLTGHRSNCISIDFHPFGEFIASGSSDTNLKIWDIRRKGCIHTYKGHTRGVNSIRFTPDGRWLVSGGEDNIVKLWDLTAGKLLHDFKCHEGQIQC-----IDFHPHEFLLATGSADKTVKFWDLETFEMIGS----SVPETSSVHSMTFNPDGRTLFCGLHESLKVLSWEPIRCHDVVDGGWSRLSDLNVHEGKLIGCSYNQSCVGVWVADISRIEPYARSSAARSNGHSGSESNAGSIQSLKTISSIKTAMGRSSASQTSVNSIKTSTGRLSVSQNSQTIAEET--KPLTYDPRVIKQRDASSTEVLKGGRRRSLVASWERREHSPNY--EGPKSSNSLENMSASSISF---TSRGCLSS------ARQETLSASDEDAIADLMEWHKQFLTSAQSRLTKLQVVCQLWDRNDVKGVINAMEKMSDHAVSADLVSILMEMSDAI-TLDLCTYLLPLLTGLLESK------IDRHTSISLE--------MLLKLIKIFGPVIHSALSAVPSVGVDLQVEERLEKCKTCFIE-----FEKVKRILPSLTRRGGSIARSAQE 613          
The following BLAST results are available for this feature:
BLAST of EWM23965.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585105251|gb|EWM23965.1|0.000e+0100.00katanin p80 wd40 repeat-containing subunit b1 -lik... [more]
gi|593792468|ref|XP_007159273.1|6.690e-5126.38hypothetical protein PHAVU_002G224100g [Phaseolus ... [more]
gi|302782379|ref|XP_002972963.1|9.002e-5035.22hypothetical protein SELMODRAFT_98102, partial [Se... [more]
gi|168031665|ref|XP_001768341.1|1.126e-4832.47predicted protein [Physcomitrella patens] >gi|1626... [more]
gi|1142652291|gb|AQK47277.1|2.887e-4832.89Katanin p80 WD40 repeat-containing subunit B1-like... [more]
gi|1142652782|gb|ONM12104.1|5.156e-4832.56Katanin p80 WD40 repeat-containing subunit B1-like... [more]
gi|635362413|emb|CCI10445.1|6.422e-4827.46unnamed protein product [Albugo candida][more]
gi|1149787325|ref|XP_020155607.1|7.330e-4824.01katanin p80 WD40 repeat-containing subunit B1 homo... [more]
gi|1142652772|gb|ONM12094.1|9.964e-4832.56Katanin p80 WD40 repeat-containing subunit B1-like... [more]
gi|743826494|ref|XP_010933311.1|4.709e-4727.31PREDICTED: katanin p80 WD40 repeat-containing subu... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6742rna6742Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications