EWM23965.1, cds6726 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM23965.1 vs. NCBI_GenBank
Match: gi|585105251|gb|EWM23965.1| (katanin p80 wd40 repeat-containing subunit b1 -like protein [Nannochloropsis gaditana]) HSP 1 Score: 1410.59 bits (3650), Expect = 0.000e+0 Identity = 681/681 (100.00%), Postives = 681/681 (100.00%), Query Frame = 0
Query: 1 MTLSMPCLAPPKKVIEFVAHAGQVNAVTLDRQMHSLVATGGDDNIINVWRIDNAANLASLKGDSSPVNCLASDPISLRFVAGGYESGAIKIFDVASGKVSRSLPGHAEGVTCINYDTGAGMLISGSLDTSFKVWDMRTKKCAMHHKGHQSEVTDAQISPDGRWCCSSGNDGIMNLWDMRNRETIYSFELETTQGQASPILHFSFHPTQSTLATYTKDYCIRLFNTDSFELLASPPRRPLDEKCLVGAMVFDGRGRLLTSTSSRMQILSDSTLETQGTIDAPWTNLQCLSWKDGEILGAAFDNNIVSLYSITLGTPAESMTPVSITHQKSNNATANGALSPASASLRLKNSTSPVTSLASLRSSHLSAVALPSVTAEQCARKRLSPSPALPKQSVSQVNNKDHVATQRAANLTNHGKENKKVSAHMDRDGRATINCAHGTKIACNEMIPIDFIARQDRADGEIIFGTMLHRKVLMTALSVRLENLQRLNELWRAGKVPETFGLLFRLHQATPEDQGRLTVLSDFLQTVDLLGCASEHGPLSLETAAPLLPVLNSLLSLDFEGPVLAGIKTLMALLDLLGTHVQQVLRTPLSGLDLTREERVERCRKFNEAISYSFKRLEEIRTSNTFKAASPAYLAVERAGRRLESYLAQAVADWEVWGGRSDQKSNNVQFSGKSLTRTRKR 681
MTLSMPCLAPPKKVIEFVAHAGQVNAVTLDRQMHSLVATGGDDNIINVWRIDNAANLASLKGDSSPVNCLASDPISLRFVAGGYESGAIKIFDVASGKVSRSLPGHAEGVTCINYDTGAGMLISGSLDTSFKVWDMRTKKCAMHHKGHQSEVTDAQISPDGRWCCSSGNDGIMNLWDMRNRETIYSFELETTQGQASPILHFSFHPTQSTLATYTKDYCIRLFNTDSFELLASPPRRPLDEKCLVGAMVFDGRGRLLTSTSSRMQILSDSTLETQGTIDAPWTNLQCLSWKDGEILGAAFDNNIVSLYSITLGTPAESMTPVSITHQKSNNATANGALSPASASLRLKNSTSPVTSLASLRSSHLSAVALPSVTAEQCARKRLSPSPALPKQSVSQVNNKDHVATQRAANLTNHGKENKKVSAHMDRDGRATINCAHGTKIACNEMIPIDFIARQDRADGEIIFGTMLHRKVLMTALSVRLENLQRLNELWRAGKVPETFGLLFRLHQATPEDQGRLTVLSDFLQTVDLLGCASEHGPLSLETAAPLLPVLNSLLSLDFEGPVLAGIKTLMALLDLLGTHVQQVLRTPLSGLDLTREERVERCRKFNEAISYSFKRLEEIRTSNTFKAASPAYLAVERAGRRLESYLAQAVADWEVWGGRSDQKSNNVQFSGKSLTRTRKR
Sbjct: 1 MTLSMPCLAPPKKVIEFVAHAGQVNAVTLDRQMHSLVATGGDDNIINVWRIDNAANLASLKGDSSPVNCLASDPISLRFVAGGYESGAIKIFDVASGKVSRSLPGHAEGVTCINYDTGAGMLISGSLDTSFKVWDMRTKKCAMHHKGHQSEVTDAQISPDGRWCCSSGNDGIMNLWDMRNRETIYSFELETTQGQASPILHFSFHPTQSTLATYTKDYCIRLFNTDSFELLASPPRRPLDEKCLVGAMVFDGRGRLLTSTSSRMQILSDSTLETQGTIDAPWTNLQCLSWKDGEILGAAFDNNIVSLYSITLGTPAESMTPVSITHQKSNNATANGALSPASASLRLKNSTSPVTSLASLRSSHLSAVALPSVTAEQCARKRLSPSPALPKQSVSQVNNKDHVATQRAANLTNHGKENKKVSAHMDRDGRATINCAHGTKIACNEMIPIDFIARQDRADGEIIFGTMLHRKVLMTALSVRLENLQRLNELWRAGKVPETFGLLFRLHQATPEDQGRLTVLSDFLQTVDLLGCASEHGPLSLETAAPLLPVLNSLLSLDFEGPVLAGIKTLMALLDLLGTHVQQVLRTPLSGLDLTREERVERCRKFNEAISYSFKRLEEIRTSNTFKAASPAYLAVERAGRRLESYLAQAVADWEVWGGRSDQKSNNVQFSGKSLTRTRKR 681
BLAST of EWM23965.1 vs. NCBI_GenBank
Match: gi|593792468|ref|XP_007159273.1| (hypothetical protein PHAVU_002G224100g [Phaseolus vulgaris] >gi|561032688|gb|ESW31267.1| hypothetical protein PHAVU_002G224100g [Phaseolus vulgaris]) HSP 1 Score: 197.593 bits (501), Expect = 6.690e-51 Identity = 172/652 (26.38%), Postives = 285/652 (43.71%), Query Frame = 0
Query: 13 KVIEFVAHAGQVNAVTLDRQMHSLVATGGDDNIINVWRIDNAANLASLKGDSSPVNCLASDPISLRFVAGGYESGAIKIFDVASGKVSRSLPGHAEGVTCINYDTGAGMLISGSLDTSFKVWDMRTKKCAMHHKGHQSEVTDAQISPDGRWCCSSGNDGIMNLWDMRNRETIYSFELETTQGQASPILHFSFHPTQSTLATYTKDYCIRLFNTDSFELLASPPRRPLDEKCLVGAMVFDGRGR-LLTSTSSRMQILSDSTLETQGTIDAPWTNLQCLSWKDGEILGAAFDNNIVSLY--SITLGTPA----ESMTPVSITHQ-----KSNNATANG-------ALSPASASLRLKN-------------STSPVTSLASLRSSHLSAVALPSVTAEQCARKRLSPSPALPKQSV--SQVNNKDHVATQRAAN-----LTNHGKENKKVSAHMDRDGRATI-NCAHGTKIACNEMIPIDFIARQDRA-DGEIIFGTMLHRKVLMTALSVRLENLQRLNELWRAGKVPETFGLLFRL-HQATPEDQGRLTVLSDFLQTVDLLGCASEHGPLSLETAAPLLPVLNSLLSLDFEGPVLAGIKTLMALLDLLGTHVQQVLRTPLS-GLDLTREERVERCRKFNEAISYSFKRLEEIR 621
K+ EFVAH+G VN + + R+ + L TGGDD +N+W I A +L SL G +S V + D + V G SG IK++D+ K+ R+L GH T + + SGSLDT+ +WD+R K C +K H ++ + SPDGRW S G D ++ +WD+ + ++ F+ I FHP + LAT + D ++ ++ ++FEL+ S E V ++ F GR L +++ S + +D WT L L DG++LG +F +N V ++ I+L P E+ S H+ + G ++SP + S +KN SPV + + +S +L E+ RK ++P+ + + N++++ + N T+ ++ + + D+ T+ N T N + +F + A DGEII G M ++ L RL LQ + W + + L +L Q+ D + V + T+DL C LLPVL L+ E V + L+ L+ + G ++ + P S G+DL E+R E + F +L++IR
Sbjct: 7 KLQEFVAHSGNVNCLKIGRKANRLFITGGDDYNVNLWMIGKATSLISLCGHTSTVESVTFDSAEV-LVLSGASSGVIKLWDLEEAKMLRTLTGHRSNCTAVEFHPFGEFFASGSLDTNLNIWDIRKKGCIHTYKDHSQGISTIKFSPDGRWVVSGGFDNVVKVWDLTGGKLLHDFKY-----HEGHIRSLDFHPLEFLLATGSADRTVKFWDLETFELIGSSRH----EVSGVRSITFHPDGRTLFAGLEDSLKVYSWEPVICHDAVDMGWTTLGDLCIHDGKLLGCSFYSNSVGVWVSDISLIKPYGGGLETEKKESTEHKLSLQGRQMEKIEYGVGTFGLCSVSPDNESKEIKNIYIDCNQSSSYSKVISPVKYVNGVATSQGRTRSL----VERFERKEITPTKEDQDNATPTTTFENRENILKEDQTNASPITTTSTSEKGEIIPFSEDKKNMPTVPNTTSETDKPTN-FLKAEFGRSSNSANDGEIIEGLMQIHDATVSNLRSRLTKLQVVRHFWESNDIKGAISALRKLADQSVQADVISVLVEKMEIFTLDLFSC--------------LLPVLTGLVDSKIERHVKVSLDMLLKLVVVFGPTIRSTISAPPSVGVDLHGEQR-------RECSNQCFMQLQKIR 622
BLAST of EWM23965.1 vs. NCBI_GenBank
Match: gi|302782379|ref|XP_002972963.1| (hypothetical protein SELMODRAFT_98102, partial [Selaginella moellendorffii] >gi|300159564|gb|EFJ26184.1| hypothetical protein SELMODRAFT_98102, partial [Selaginella moellendorffii]) HSP 1 Score: 187.193 bits (474), Expect = 9.002e-50 Identity = 106/301 (35.22%), Postives = 162/301 (53.82%), Query Frame = 0
Query: 13 KVIEFVAHAGQVNAVTLDRQMHSLVATGGDDNIINVWRIDNAANLASLKGDSSPVNCLASDPISLRFVAGGYESGAIKIFDVASGKVSRSLPGHAEGVTCINYDTGAGMLISGSLDTSFKVWDMRTKKCAMHHKGHQSEVTDAQISPDGRWCCSSGNDGIMNLWDMRNRETIYSFELETTQGQASPILHFSFHPTQSTLATYTKDYCIRLFNTDSFELLASPPRRPLDEKCLVGAMVFDGRGR-LLTSTSSRMQILSDSTLETQGTIDAPWTNLQCLSWKDGEILGAAFDNNIVSLYSITL 312
K+ EFVAH+ QVN + + R+ ++ TGGDD+ +N+W I + SL G SSPV + D VAG SGAIK++D+ K+ R+L GH T +++ SGSLD++ K+WD+R K C ++GH V + SPDGRW S G D + LWD+ + I+ F+ Q IL FHP + LAT + D + ++ ++FEL+ S P D V M+F GR LL + +++ S L IDA W+ L L+ +G++LG +F+ + V ++ + L
Sbjct: 7 KLQEFVAHSSQVNCLKIGRKTSRVLVTGGDDHKVNMWAIGKPNAILSLAGHSSPVESVTFDAAESHVVAGA-ASGAIKLWDLEEAKIVRTLTGHRSNCTAVDFHPFGEFFASGSLDSNLKIWDIRRKGCIHTYRGHCCGVNCLKFSPDGRWVVSGGEDKTVKLWDLTAGKLIHDFKYHDDQ-----ILSLDFHPHEFLLATGSDDKTAKFYDLETFELVGSSG--PEDSG--VRPMIFTPDGRTLLCALREGLKVYSWEPLRCHDVIDANWSRLADLNVHEGKLLGCSFNQSCVGVWVVDL 297
BLAST of EWM23965.1 vs. NCBI_GenBank
Match: gi|168031665|ref|XP_001768341.1| (predicted protein [Physcomitrella patens] >gi|162680519|gb|EDQ66955.1| predicted protein, partial [Physcomitrella patens]) HSP 1 Score: 183.341 bits (464), Expect = 1.126e-48 Identity = 100/308 (32.47%), Postives = 162/308 (52.60%), Query Frame = 0
Query: 16 EFVAHAGQVNAVTLDRQMHSLVATGGDDNIINVWRIDNAANLASLKGDSSPVNCLASDPISLRFVAGGYESGAIKIFDVASGKVSRSLPGHAEGVTCINYDTGAGMLISGSLDTSFKVWDMRTKKCAMHHKGHQSEVTDAQISPDGRWCCSSGNDGIMNLWDMRNRETIYSFELETTQGQASPILHFSFHPTQSTLATYTKDYCIRLFNTDSFELLASPPRRPLDEKCLVGAMVFDGRGR-LLTSTSSRMQILSDSTLETQGTIDAPWTNLQCLSWKDGEILGAAFDNNIVSLYSITLGTPAESMTPV 322
EFVAH+ VN + + ++ ++ TGG+D+ +N+W I + SL G +S V +A D + VAG SG IK++D+ K+ R+L GH +++ SGSLDT+ K+WD+R K C +KGH + + SPDGRW S G D ++ LWD+ + ++ F+ Q Q FHP + LAT + D ++ F+ ++FEL+ S + V AMVF+ GR +LT+ +++ S L +D W L LS +G++LG +F+ + V ++ + L + PV
Sbjct: 5 EFVAHSSNVNCLKIGKKSSRVLVTGGEDHKVNMWAIGKPNAILSLAGHTSAVESVAFDASEVVVVAGA-ASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRRKGCIHTYKGHTRGINSIKFSPDGRWVVSGGEDNVVKLWDLTAGKLMHDFKYHEGQVQC-----LDFHPHEFLLATGSADRTVKFFDLETFELIGSAG----PDSAGVRAMVFNPDGRTVLTAMQDSLKVFSWEPLRCHDMVDVGWHKLADLSIHEGKLLGCSFNQSCVGVWVVDLQVNGFLLLPV 302
BLAST of EWM23965.1 vs. NCBI_GenBank
Match: gi|1142652291|gb|AQK47277.1| (Katanin p80 WD40 repeat-containing subunit B1-like protein [Zea mays]) HSP 1 Score: 184.882 bits (468), Expect = 2.887e-48 Identity = 99/301 (32.89%), Postives = 161/301 (53.49%), Query Frame = 0
Query: 13 KVIEFVAHAGQVNAVTLDRQMHSLVATGGDDNIINVWRIDNAANLASLKGDSSPVNCLASDPISLRFVAGGYESGAIKIFDVASGKVSRSLPGHAEGVTCINYDTGAGMLISGSLDTSFKVWDMRTKKCAMHHKGHQSEVTDAQISPDGRWCCSSGNDGIMNLWDMRNRETIYSFELETTQGQASPILHFSFHPTQSTLATYTKDYCIRLFNTDSFELLASPPRRPLDEKCLVGAMVFDGRGR-LLTSTSSRMQILSDSTLETQGTIDAPWTNLQCLSWKDGEILGAAFDNNIVSLYSITL 312
K+ EFVAHA VN + + R+ ++ TGG+D+ +N+W I ++ SL G +S V + D + FVA G SG IK++D+ K+ R+L GH +++ SGSLDT+ K+WD+R K C +KGH V + +PDGRW S G D I+ LWD+ + ++ F+ Q Q FHP + LAT + D ++ ++ ++FEL+ S E V +M F+ GR LL +++ S + T+D W+ L L+ +G++LG +F+ + V ++ + L
Sbjct: 10 KLQEFVAHASNVNCLKIGRKTSRVLVTGGEDHKVNLWAIGKPNSILSLSGHTSAVESVGFDSTEV-FVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCMSVDFHPFGEFFASGSLDTNLKIWDIRRKNCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNIVKLWDLTAGKLLHEFKCHEGQIQC-----IDFHPHEFLLATGSADKTVKFWDLETFELIGSTG----PETTGVRSMTFNPDGRTLLCGLHESLKVFSWEPIRCHDTVDVGWSRLADLNVHEGKLLGCSFNQSCVGIWVVDL 300
BLAST of EWM23965.1 vs. NCBI_GenBank
Match: gi|1142652782|gb|ONM12104.1| (Katanin p80 WD40 repeat-containing subunit B1-like protein [Zea mays]) HSP 1 Score: 183.341 bits (464), Expect = 5.156e-48 Identity = 98/301 (32.56%), Postives = 161/301 (53.49%), Query Frame = 0
Query: 13 KVIEFVAHAGQVNAVTLDRQMHSLVATGGDDNIINVWRIDNAANLASLKGDSSPVNCLASDPISLRFVAGGYESGAIKIFDVASGKVSRSLPGHAEGVTCINYDTGAGMLISGSLDTSFKVWDMRTKKCAMHHKGHQSEVTDAQISPDGRWCCSSGNDGIMNLWDMRNRETIYSFELETTQGQASPILHFSFHPTQSTLATYTKDYCIRLFNTDSFELLASPPRRPLDEKCLVGAMVFDGRGR-LLTSTSSRMQILSDSTLETQGTIDAPWTNLQCLSWKDGEILGAAFDNNIVSLYSITL 312
K+ EFVAH+ VN + + R+ ++ TGG+D+ +N+W I ++ SL G +S V + D + FVA G SG IK++D+ K+ R+L GH +++ SGSLDT+ K+WD+R K C +KGH V + +PDGRW S G D I+ LWD+ + ++ F+ Q Q FHP + LAT + D ++ ++ ++FEL+ S E V +M F+ GR LL +++ S + T+D W+ L L+ +G++LG +F+ + V ++ + L
Sbjct: 10 KLQEFVAHSSNVNCLKIGRKTSRVLVTGGEDHKVNLWAIGKPNSILSLSGHTSAVESVGFDSTEV-FVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCMSVDFHPFGEFFASGSLDTNLKIWDIRRKNCIHTYKGHTRGVNTIRFTPDGRWVVSGGEDNIVKLWDLTAGKLLHEFKCHEGQIQC-----IDFHPHEFLLATGSADKTVKFWDLETFELIGSTG----PETTGVRSMTFNPDGRSLLCGLHESLKVFSWEPIRCHDTVDVGWSRLADLNVHEGKLLGCSFNQSCVGIWVVDL 300
BLAST of EWM23965.1 vs. NCBI_GenBank
Match: gi|635362413|emb|CCI10445.1| (unnamed protein product [Albugo candida]) HSP 1 Score: 188.348 bits (477), Expect = 6.422e-48 Identity = 170/619 (27.46%), Postives = 272/619 (43.94%), Query Frame = 0
Query: 17 FVAHAGQVNAVTLDRQMHSLVATGGDDNIINVWRIDN--AANLASLKGDSSPVNCLASDPISLRFVAGGYESGAIKIFDVASGKVSRSLPGHAEGVTCINYDTGAGMLISGSLDTSFKVWDMRTKKCAMHHKGHQSEVTDAQISPDGRWCCSSGNDGIMNLWDMRNRETIYSFELETTQGQASPILHFSFHPTQSTLATYTKDYCIRLFNTDSFELLASPPRRPLDEKCLVGAMVFDGRGRLLTSTS-------SRMQILSDSTL----ETQGT--IDAPWTNLQCLSWKDGEILGAAFDNNIVSLYSITLG--TPAESMTPVSITHQKSN-NATANGALS-PASASLRLKNSTSPVTSLASLRSSHLSAVALPS--VTAEQCARKRL-----SPSPALPKQSVSQVNNKD-HVATQRAANLTNHGKENKKVSAHMDRDGRATINCAHGTKIACNEMIPIDFIARQDRADGEIIFGTMLHRKVLMTALSVRLENLQRLNELWRAGKVPETFGLLFRLHQATPEDQGRLTVLSDFLQTVDLLGCASEHGPLSLETAAPLLPVLNSLLSLDFEGPVLAGIKTLMALLDLLGTHVQQVLRTPL---SGLDLTREERVERCRK 605
F+AH+ VN + + A+GGDD +N+WR+ NL SL G +S +N L DP + +AG ESG+IK FD+ +GKVSR+L GH TC+++ + SGSLDT K+WDMRTK C +GH+SE+T +PDGRW S +DG + +WD+ + + F + + I F+P + L + + D +R+++ F + P + +V G+ + S S Q L ET G +D+P + D +++GA+ + +S++ + L +P S + SN + T N AL S +LR+K+ + RS+ +A LP T E C R+RL S S AL + +NKD H+ V H ++D + E P+ + R E I + + RL+ ++++ +W G V ET G + +L + E +L D L+ D + + +E LLP++ ++ FE V G+ L+D + VQ+ + T +DL EER RC K
Sbjct: 6 FLAHSSTVNCFRFGPRSAQIAASGGDDQNVNIWRLREMETKNLMSLGGHASAINALVFDPNETKVIAGS-ESGSIKSFDLEAGKVSRTLKGHMSTCTCLDHHLYGDYIASGSLDTIVKIWDMRTKSCMQIFRGHRSEITKLTFTPDGRWLTSGDSDGSIRIWDLTAGKQLKEF-----RDHSGAITALEFNPEEFILVSASADKSVRIWDVQDFSFVGVTPSDTAITTSISHTLVEPYSGKFIACCSHDFIRLWSYEQALECHDCLPFHETNGVAHVDSPTDTIMT---HDSKLMGASMQDAFISIWILELAAFSPFRRERASSASSTTSNFDKTTNLALPIKPSRALRVKHEVDHAFRMR--RSADNNAQVLPEGPKTPEVC-RRRLPHAQSSESIALHALRIETNSNKDIHIP----------------VPPHSNQDPSPS-----------KEPTPM-LLLRVSNQSIEFIVELRSGMETNIKLFQSRLKCMKQILNIWSKGSVHETLGYIEKLPSSKRE-----PILVDILRLDDTVKFG-----VDIEACCILLPLITDMIQSKFEAYVAVGLSYAQKLVDGFRSIVQESIGTSQLRSREVDLAAEERARRCEK 574
BLAST of EWM23965.1 vs. NCBI_GenBank
Match: gi|1149787325|ref|XP_020155607.1| (katanin p80 WD40 repeat-containing subunit B1 homolog isoform X2 [Aegilops tauschii subsp. tauschii]) HSP 1 Score: 189.119 bits (479), Expect = 7.330e-48 Identity = 157/654 (24.01%), Postives = 286/654 (43.73%), Query Frame = 0
Query: 13 KVIEFVAHAGQVNAVTLDRQMHSLVATGGDDNIINVWRIDNAANLASLKGDSSPVNCLASDPISLRFVAGGYESGAIKIFDVASGKVSRSLPGHAEGVTCINYDTGAGMLISGSLDTSFKVWDMRTKKCAMHHKGHQSEVTDAQISPDGRWCCSSGNDGIMNLWDMRNRETIYSFELETTQGQASPILHFSFHPTQSTLATYTKDYCIRLFNTDSFELLASPPRRPLDEKCL----VGAMVFDGRGR-LLTSTSSRMQILSDSTLETQGTIDAPWTNLQCLSWKDGEILGAAFDNNIVSLYSITLGTPAESMTPVSITHQKSN-NATANG----------ALSPASASLRLKNSTSPVTSLASLRSSHLSAVALPSVTAEQCARKRLSPSPALPKQSVSQVNNKDHVA--TQRAANLTNHGKE---NKKVSAHMDRDGR-----ATINCAHGTKIAC-----NEMIPIDFIARQDRADGE---------IIFGTMLHRKVLMTALSVRLENLQRLNELWRAGKVPETFGLLFRL--HQATPEDQGRLTVLSDFLQTVDLLGCASEHGPLSLETAAPLLPVLNSLLSLDFEGPVLAGIKTLMALLDLLGTHVQQVL-RTPLSGLDLTREERVERCRKFNEAISYSFKRLEEIRTS 623
K+ EFVAHA V ++ + TGG+D +N+W + + + SL G +SPV L+ D + + G +G IKI+D+ KV R+ GH ++ SGS DT+ K+WDMR K+C ++GH + + +PDGRW S G D + +WD+ + ++ F L PI FHP + LAT + D ++ ++ ++FEL+ S E + V +M F+ G+ L +++LS + +D W+ L L+ ++G++LG +++ + V ++ + L P ++ ++ N T NG L S S R + + +P ++L S ++P +A RKRLS +P + +++ + ++ + N T+H K N + + R ++ + + GT C +E P RQ GE +I M + + + + RL L+ + W+ + + + R+ H T + +++L ++L+ +LP+ ++LL ++ + + T++ L+ + L TP +DL E R+ERC S F+ LE+I S
Sbjct: 8 KLQEFVAHASDVTCAKFGKRTSRTLITGGEDQKVNLWAVGKPSAVLSLSGHTSPVESLSFDSSEV-MIGAGAATGTIKIWDIKEAKVVRTFTGHRSNCASLDSHPFGEFFASGSSDTNMKIWDMRKKRCIHTYQGHTGRIDVLRFTPDGRWIVSGGADSSVKIWDLTAGKLLHDFRL-----HEGPINCLDFHPHEFLLATGSADKTVKFWDLETFELIGSSGPENYREYYMPASVVRSMTFNSDGKALFCGLHENLKVLSWEPIICHDAVDVGWSTLADLNVQEGKLLGCSYNQSCVGIWVVDL----MKFDPYTVGSAEAFWNGTGNGPLQADNSISSMLGSLSISRRPEANETPSSTLLKRPMSMSKETSVPVSSA---VRKRLSKAPGINNLRLTRAESAPLLSPRVRLKPNSTDHQKRHIANVRFKVDLSTSARMIAGLSSCSLSGGTGHLCASYERSEYAPTSDGLRQSSFAGERSASANDDDLIADLMQNHQEFIHGVKSRLTKLELVYRCWQNNDIKGSVSAMRRMSDHAVTAD-------------IINVLIMEKSTKYITLDICTSVLPLASNLLESGYDRHLNVALATILNLVKSFRASIFSTLSSTPPVCVDLEAEHRLERC-------SICFQELEKINAS 628
BLAST of EWM23965.1 vs. NCBI_GenBank
Match: gi|1142652772|gb|ONM12094.1| (Katanin p80 WD40 repeat-containing subunit B1-like protein [Zea mays]) HSP 1 Score: 183.341 bits (464), Expect = 9.964e-48 Identity = 98/301 (32.56%), Postives = 161/301 (53.49%), Query Frame = 0
Query: 13 KVIEFVAHAGQVNAVTLDRQMHSLVATGGDDNIINVWRIDNAANLASLKGDSSPVNCLASDPISLRFVAGGYESGAIKIFDVASGKVSRSLPGHAEGVTCINYDTGAGMLISGSLDTSFKVWDMRTKKCAMHHKGHQSEVTDAQISPDGRWCCSSGNDGIMNLWDMRNRETIYSFELETTQGQASPILHFSFHPTQSTLATYTKDYCIRLFNTDSFELLASPPRRPLDEKCLVGAMVFDGRGR-LLTSTSSRMQILSDSTLETQGTIDAPWTNLQCLSWKDGEILGAAFDNNIVSLYSITL 312
K+ EFVAH+ VN + + R+ ++ TGG+D+ +N+W I ++ SL G +S V + D + FVA G SG IK++D+ K+ R+L GH +++ SGSLDT+ K+WD+R K C +KGH V + +PDGRW S G D I+ LWD+ + ++ F+ Q Q FHP + LAT + D ++ ++ ++FEL+ S E V +M F+ GR LL +++ S + T+D W+ L L+ +G++LG +F+ + V ++ + L
Sbjct: 10 KLQEFVAHSSNVNCLKIGRKTSRVLVTGGEDHKVNLWAIGKPNSILSLSGHTSAVESVGFDSTEV-FVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCMSVDFHPFGEFFASGSLDTNLKIWDIRRKNCIHTYKGHTRGVNTIRFTPDGRWVVSGGEDNIVKLWDLTAGKLLHEFKCHEGQIQC-----IDFHPHEFLLATGSADKTVKFWDLETFELIGSTG----PETTGVRSMTFNPDGRSLLCGLHESLKVFSWEPIRCHDTVDVGWSRLADLNVHEGKLLGCSFNQSCVGIWVVDL 300
BLAST of EWM23965.1 vs. NCBI_GenBank
Match: gi|743826494|ref|XP_010933311.1| (PREDICTED: katanin p80 WD40 repeat-containing subunit B1 homolog isoform X5 [Elaeis guineensis]) HSP 1 Score: 186.422 bits (472), Expect = 4.709e-47 Identity = 177/648 (27.31%), Postives = 300/648 (46.30%), Query Frame = 0
Query: 13 KVIEFVAHAGQVNAVTLDRQMHSLVATGGDDNIINVWRIDNAANLASLKGDSSPVNCLASDPISLRFVAGGYESGAIKIFDVASGKVSRSLPGHAEGVTCINYDTGAGMLISGSLDTSFKVWDMRTKKCAMHHKGHQSEVTDAQISPDGRWCCSSGNDGIMNLWDMRNRETIYSFELETTQGQASPILHFSFHPTQSTLATYTKDYCIRLFNTDSFELLASPPRRPLDEKCLVGAMVFDGRGR-LLTSTSSRMQILSDSTLETQGTIDAPWTNLQCLSWKDGEILGAAFDNNIVSLY--SITLGTP-AESMTPVSITH--QKSNNATANGALSPASASLRLKNSTSPVTSLASLRSS--HLSAVALPSVTAEQCARKRLSPSPALPKQ---SVSQV----NNKDHVAT-QRAANLTNHGKENKKVSAHMDRDGRATINCAHGTKIACNEMIPIDFIARQDR---ADGEIIFGTMLHRKVLMTALSVRLENLQRLNELWRAGKVPETFGLLFRL--HQATPEDQGRLTVLSDFLQTVDLLGCASEHGPLSLETAAPLLPVLNSLLSLDFEGPVLAGIKTLMALLDLLGTHVQQVLR-TPLSGLDLTREERVERCRK-FNEAISYSFKRLEEIRTSNTFKAASPAYLAVE 637
K+ EFVAH VN + + R+ ++ TGG+D+ +N+W I + SL G +S V ++ D S +A G SG IK++D+ KV R+L GH I++ + SGS DT+ K+WD+R K C +KGH V + +PDGRW S G D I+ LWD+ + ++ F+ Q Q FHP + LAT + D ++ ++ ++FE++ S + E V +M F+ GR L +++LS + +D W+ L L+ +G+++G +++ + V ++ I+ P A S S H +SN + + +S + S++ TS+ S+++S LS AE+ K L+ P + KQ S ++V + VA+ +R + N+ E K S ++ ++I+ T C ARQ+ +D + I M K +T+ RL LQ + +LW V + ++ H + + L +SD + T+DL LE+ ++ S+ E L+ L+ + G + L P G+DL EER+E+C+ F E F++++ I S T + S A A E
Sbjct: 9 KLQEFVAHDSNVNCLKIGRKTSRVLVTGGEDHKVNLWAIGKPNTILSLSGHTSAVESVSLDS-SEVLLAAGAASGTIKLWDLGEAKVVRTLTGHRSNCISIDFHPFGEFIASGSSDTNLKIWDIRRKGCIHTYKGHTRGVNSIRFTPDGRWLVSGGEDNIVKLWDLTAGKLLHDFKCHEGQIQC-----IDFHPHEFLLATGSADKTVKFWDLETFEMIGS----SVPETSSVHSMTFNPDGRTLFCGLHESLKVLSWEPIRCHDVVDGGWSRLSDLNVHEGKLIGCSYNQSCVGVWVADISRIEPYARSSAARSNGHSGSESNAGSIQSLKTISSIKTAMGRSSASQTSVNSIKTSTGRLSVSQNSQTIAEET--KPLTYDPRVIKQRDASSTEVLKGGRRRSLVASWERREHSPNY--EGPKSSNSLENMSASSISF---TSRGCLSS------ARQETLSASDEDAIADLMEWHKQFLTSAQSRLTKLQVVCQLWDRNDVKGVINAMEKMSDHAVSADLVSILMEMSDAI-TLDLCTYLLPLLTGLLESK------IDRHTSISLE--------MLLKLIKIFGPVIHSALSAVPSVGVDLQVEERLEKCKTCFIE-----FEKVKRILPSLTRRGGSIARSAQE 613 The following BLAST results are available for this feature:
BLAST of EWM23965.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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