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Properties
| Property Name | Value |
|---|
| Product | holliday junction resolvase |
| Orig transcript id | gnl|cribi|Naga_100027g49.161.mrna |
| Orig protein id | gnl|cribi|Naga_100027g49.161 |
| Gbkey | mRNA |
| Note | encoded by transcript variant 2; alternatively spliced |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002469.1 | supercontig | CM002469.1:389576..391978 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna6740 ID=rna6740|Name=rna6740|organism=Nannochloropsis gaditana|type=mRNA|length=1694bp
AAGGCCAGCGCCGATTGTTTGCTGTGTGACTCTCTCGAGGGCTTCAAACG
CTCAAAGAAATAAGTGAAGGCGATTAATAGCACGCACTTGTGGGAATAGC
GCCGTGGTGAGAGTCGCGCGGTGGTCAACTAGCATGTCGTAATTGGAATG
TTTTGCTCATACGGGGAAAGTATCCTTTGATCCGCCATTCACGTCTGTCT
TTTTACTTCATTCATATCCCTGTATGCATTTGTCCATTCCTTTTCACAAG
GCGCGTTGATTCTATCAGGCTAGTAGATTAAAGGACTCTAGTTGGTCACT
CTTTTGACTGCGTCCAGCCATGACCTCTGGGCGCGAGTTCAAATCTCATC
GGGCAAAACTACCAAATTTCGAGCCTGGCAAGTCTCTTTATGACCTTGGT
ACTTTCAGTGGACGCCTCAAACACTTCCTGCGTGTTCTGGACCCCAGGAC
GCTTTTTATTTCAGCGCAATATCTAAAAAGATGTGAGAATATGGTAAAAG
ACTGGCAGGTGGGGAGTTACTCCAAAAATCAAGAGTTGTGGGATTGCCAG
TCAACCCTCGAAGCGTGCACTCACCCTTTGTCAAAATCCACGATTCCAAT
ACCGTTCCGGATGGCTGCATTTGTGCCTGTTAATGTCCCCATCGTCTTTA
TTATGATGCAAGCCACTTCTCCTGGTGGTGTGCTTTTCGTCCATTTGCTA
AACCAGACGTACAACTCCGCTGTCAACTTTAGCAACAGATCCAGCGGGGG
AGCAGCTGATACCAATCAAGTTTTGCAGTCATACCTGCTGGCGGTTGCAA
CGTCATGCTCTTTAGCCTTGGGCCTGGGCAAACTTGCAAGAAAAATACCC
GCCGCTTCACCTGCACTTTTTAGTTACATCGCTGTTTCCGCAGCCGGTAC
GAGTAACATCATATTTTCGCGGCAAAATGAATTGAGAGAGGGCGCATCGA
TTTCGGATAGCAGCGGTCAGTACCATGGACGGTCGCTGATCGCGGGTAAA
AATGTAGTGATACAGACAGCTATCTCTCGTGGTGTAATTTTCCCCTTACC
CGTTCTGATCTTGCCGCACCTTATAATGCGAGGACTGGCAAAGCTTACCC
TTCTCCCGACGTCCCCGCGGTTTCGACTAGCCGTTGAACTGACGGCTATA
ACGGGATCATTAGCAGGGGCGCTACCTGTGTGCATGGCTCTTTTCCCGCA
GACAGCGTCCTACAAAGCCACAGACCTGGAGCCAAAATTTCATAATTTGA
GAGATGTACAAGGTCGGCCCATTTTGATCTTCTATGCAAATAAGGGATTG
TGAAAAACATAGTGATTTCAGGCTTGAATACAAGGCTGGTGTACACTGTA
CGAACCCCTTTTTTTTTCAACTTTTGGCATGCCTTCGTTGGCTCATATGA
AGGGCAAGCTAAGCGTGCACATGCGGCAAAGCGGCTCGGATTCTGAATGC
TTCTGTGTGATGCCGTTTGAATGATTCACCTATCAACTGAGGAATAGCTG
GCTTGAACAGTGATCTGATGTGTCCTTAAGCTTTCTCAGTAGCACCACGC
TTACGTTTTCGGGAGTCTCTACGAGTCTTGTGATGCGGACCTGTCCTTCA
TAGGTCGATTTAAAATGATGCCCACACGACGAATGCGATAAGTGTGACAA
GGAAGTTGCGTCGAATACAATTGCGCATAGTTATACGCCTTTTC back to topprotein sequence of rna6740 >rna6740-protein ID=rna6740-protein|Name=rna6740|organism=Nannochloropsis gaditana|type=polypeptide|length=325bp
MPYAICCLHIFLVCLLFFSVISPGFPFWVPRHPRSCRHELRLTYERLWEP
SSPPSQTAASLDRNLSTAVLDLLGSRTLGLDWGHKKIGVALTAGFSQRPL
GTIINVAGHSNNATRHRPTIDQLLGILRAEGAIRIVIGYPLFRDGTLSPQ
ANATKVFARMVADRALETGVMASDRTPFVYLWDERLTSQAAKVNIKTKSF
LHSSDDVDSQAACLILEDFYRHKGYKAEVVWPNPSILGEKTTMGATNGTP
PAERRPLSGRRRNDDVVFSPNVAFTSRANFSYDEWRRAELLRYGREFPVV
SPSHSKDSENGAGTGKKKKKRKKKK back to topmRNA from alignment at CM002469.1:389576..391978+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna6740 ID=rna6740|Name=rna6740|organism=Nannochloropsis gaditana|type=mRNA|length=2403bp|location=Sequence derived from alignment at CM002469.1:389576..391978+ (Nannochloropsis gaditana)
AAAATGAGTGGATGTCTGCCTTTTGATTCCTGGAAGGTGATTACGGCGTA
GTTTTCTTTCAACTGGAGAATTATATGGGATGAAATGTCATCAACTGTGG
AATAAAAGATGTATGATTCCATTTTAATGCGTAATAAATTTGCACTTATA
CGAAATGTTGccattttggcgcgaaggaaCTTGCTTCCTTGTACGCCTCG
TTTCCTGTTAGTGCTGTCAGCTAACCGGCCGATGGATATTTCCCCTACTC
TTACACTTCTGCTGATTAAATAAATTCTTACGGCCATCAACTCAAATGAT
GTGCAGGGCCGGAGATTGAGGAAGAGATTTGGAGCATCAACAATGGGCGT
TTAATCTGCAGGAGACTTGACCATATCTGCTTATGCCTTATGCCATATGC
TGTCTGCATATTTTCTTGGTCTgcctgctcttcttctcagTTATAAGCCC
AGGGTTTCCATTCTGGGTTCCCCGACACCCGCGTTCTTGTCGCCATGAGC
TTCGTTTAACTTATGAAAGACTTTGGGAGCCgtcatctcccccttcccaa
aCGGCAGCTTCATTGGATCGAAACCTCTCAACGGCTGTGTTGGACTTGTT
GGGCAGCCGTACATTGGGACTTGATTGGGGTCACAAGAAGATTGGTGTAG
CATTGACAGCGGGCTTCAGCCAACGACCTCTGGGTACAATCATCAACGTA
GCGGGTCACAGCAACAACGCAACACGACATCGCCCCACCATTGATCAATT
GTTGGGTATCTTGCGTGCAGAAGGGGCCATTCGAATTGTGATAGGATATC
CACTCTTCCGCGACGGAACTTTAAGCCCTCAGGCAAACGCGACTAAGGTA
TTTGCCCGTATGGTCGCAGATCGCGCCTTGGAAACGGGTGTTATGGCGTC
GGATAGAACCCCATTTGTGTATTTATGGGACGAGCGCTTGACCTCGCAGG
CCGCAAAAGTGAACATAAAGACAAAATCGTTCTTGCACAGCTCTGATGAC
GTGGATTCTCAAGCAGCTTGTCTTATCTTGGAAGACTTTTACAGACATAA
AGGTTACAAAGCGGAGGTAGTGTGGCCAAATCCCTCAATCTTAGGCGAGA
AAACCACCATGGGAGCGACAAATGGGACTCCGCCAGCTGAAAGACGTCCT
TTATCAGGGAGACGCAGAAATGATGACGTTGTCTTTTCACCCAATGTCGC
ATTCACAAGTCGAGCCAATTTCTCGTACGACGAATGGAGACGGGCTGAAC
TTTTGCGCTACGGCCGAGAGTTTCCTGTTGTGTCCCCATCCCATTCTAAA
GACAGCGAAAATGGTGCAGGTAccggaaagaagaaaaagaagaggaagaa
aaagaaataatTGCGTTTTTCTTGCGACACCAGGTGGAGGTGCGGTAGTG
GCAGAGGTGTAAAGCAGGATAAAAGGAACCTGCGGGAAGGTCTCTCCGCT
TTGCTCTAATGAATTGCACATCCTTTGGAAGCAATTATAATAAATGTTAC
CATGTTACCTGGGACTCCTGAATGTTGACGGATTTGTGTATGTGTTGTTT
TGTGAGTATAGATTCTATGATAACCTTTCGTGaggaaaaaatcaaaaacA
TGCAGATCTGGATCACTCTTCTTTCCGAATTATATCCCTCAGCTTCACGT
GGAAGCGGCTTTACAATCTGATACGTGTGTGTCTTGGAAAGATGCTCCGA
GGGTTTTGCATGGACAGGTCAGATTGTTGACATAAATACGTTGGGTGTAT
TTGGTAATGAAGCGCTGCAGATACGCATCTAGGCGGTGATTTAATTAATT
GCATCATCACCCTTCATTCAATGTTAGATCTCTGTTACAGGAAGCCTTGC
CCTGCGCCCTGATTACTTCATGACGGACATCCTGTTCTGTGTGAAGCAAA
GTCTTCCATCAGGGTATCCCACGCACAAGAGGAAAAGACTTCACCATCTA
TCAGacaaaaggagagagagaggtaaCGGAAACAACGTCATTGGGATAAG
AAATGGCGTTGCCCAAAAAAATATCTCTGGCCCCGCCCATACTTTTACAC
ACCAGATGGGTAGTGGCTCTGGGTGAAGCAGAGGGTATGTGGCCGTCATA
ATTGATTGATTCTCTGTTTTGACTGGGATTCGAGGAGCGTCTCGAAGCTT
GTTACACTGTTTTTTTCCAATGAGCTTTAGACCGGTCAAAAGCCAACGAA
GCTGTTTGGCGTGGCCCATCACGCTTGTCGATTTTTGTACGACCACGTGG
GTAAAAAGATGATTAAAGTCCGAGGCTTTCCATCATGTTGCTGATTAAAG
ACAGATACTATTTAATTTTTTGGATACCGTACGTGTGTGCAATTCATGCC
CCTCTGGTTCTGTAGAATGAACAGGATCATACTGTTAAAATAGTTACGTG
TTG back to topCoding sequence (CDS) from alignment at CM002469.1:389576..391978+ >rna6740 ID=rna6740|Name=rna6740|organism=Nannochloropsis gaditana|type=CDS|length=978bp|location=Sequence derived from alignment at CM002469.1:389576..391978+ (Nannochloropsis gaditana)
ATGCCTTATGCCATATGCTGTCTGCATATTTTCTTGGTCTgcctgctctt
cttctcagTTATAAGCCCAGGGTTTCCATTCTGGGTTCCCCGACACCCGC
GTTCTTGTCGCCATGAGCTTCGTTTAACTTATGAAAGACTTTGGGAGCCg
tcatctcccccttcccaaaCGGCAGCTTCATTGGATCGAAACCTCTCAAC
GGCTGTGTTGGACTTGTTGGGCAGCCGTACATTGGGACTTGATTGGGGTC
ACAAGAAGATTGGTGTAGCATTGACAGCGGGCTTCAGCCAACGACCTCTG
GGTACAATCATCAACGTAGCGGGTCACAGCAACAACGCAACACGACATCG
CCCCACCATTGATCAATTGTTGGGTATCTTGCGTGCAGAAGGGGCCATTC
GAATTGTGATAGGATATCCACTCTTCCGCGACGGAACTTTAAGCCCTCAG
GCAAACGCGACTAAGGTATTTGCCCGTATGGTCGCAGATCGCGCCTTGGA
AACGGGTGTTATGGCGTCGGATAGAACCCCATTTGTGTATTTATGGGACG
AGCGCTTGACCTCGCAGGCCGCAAAAGTGAACATAAAGACAAAATCGTTC
TTGCACAGCTCTGATGACGTGGATTCTCAAGCAGCTTGTCTTATCTTGGA
AGACTTTTACAGACATAAAGGTTACAAAGCGGAGGTAGTGTGGCCAAATC
CCTCAATCTTAGGCGAGAAAACCACCATGGGAGCGACAAATGGGACTCCG
CCAGCTGAAAGACGTCCTTTATCAGGGAGACGCAGAAATGATGACGTTGT
CTTTTCACCCAATGTCGCATTCACAAGTCGAGCCAATTTCTCGTACGACG
AATGGAGACGGGCTGAACTTTTGCGCTACGGCCGAGAGTTTCCTGTTGTG
TCCCCATCCCATTCTAAAGACAGCGAAAATGGTGCAGGTAccggaaagaa
gaaaaagaagaggaagaaaaagaaataa back to top
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