EWM23983.1, cds6724 (CDS) Nannochloropsis gaditana

Overview
NameEWM23983.1
Unique Namecds6724
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002469.1:389958..390935 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM23983.1
Productholliday junction resolvase
Orig transcript idgnl|cribi|Naga_100027g49.161.mrna
GbkeyCDS
Noteencoded by transcript variant 2; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002469.1supercontigCM002469.1:389958..390935 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006259DNA metabolic process
GO:0009058biosynthetic process
GO:0016043cellular component organization
GO:0031564transcription antitermination
GO:0006310DNA recombination
GO:0006139nucleobase-containing compound metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
Vocabulary: INTERPRO
TermDefinition
IPR012337RNaseH-like_dom
IPR005227YqgF
IPR006641YqgF/RNaseH-like_dom
Homology
BLAST of EWM23983.1 vs. NCBI_GenBank
Match: gi|585105268|gb|EWM23982.1| (holliday junction resolvase [Nannochloropsis gaditana] >gi|585105269|gb|EWM23983.1| holliday junction resolvase [Nannochloropsis gaditana])

HSP 1 Score: 673.315 bits (1736), Expect = 0.000e+0
Identity = 325/325 (100.00%), Postives = 325/325 (100.00%), Query Frame = 0
Query:    1 MPYAICCLHIFLVCLLFFSVISPGFPFWVPRHPRSCRHELRLTYERLWEPSSPPSQTAASLDRNLSTAVLDLLGSRTLGLDWGHKKIGVALTAGFSQRPLGTIINVAGHSNNATRHRPTIDQLLGILRAEGAIRIVIGYPLFRDGTLSPQANATKVFARMVADRALETGVMASDRTPFVYLWDERLTSQAAKVNIKTKSFLHSSDDVDSQAACLILEDFYRHKGYKAEVVWPNPSILGEKTTMGATNGTPPAERRPLSGRRRNDDVVFSPNVAFTSRANFSYDEWRRAELLRYGREFPVVSPSHSKDSENGAGTGKKKKKRKKKK 325
            MPYAICCLHIFLVCLLFFSVISPGFPFWVPRHPRSCRHELRLTYERLWEPSSPPSQTAASLDRNLSTAVLDLLGSRTLGLDWGHKKIGVALTAGFSQRPLGTIINVAGHSNNATRHRPTIDQLLGILRAEGAIRIVIGYPLFRDGTLSPQANATKVFARMVADRALETGVMASDRTPFVYLWDERLTSQAAKVNIKTKSFLHSSDDVDSQAACLILEDFYRHKGYKAEVVWPNPSILGEKTTMGATNGTPPAERRPLSGRRRNDDVVFSPNVAFTSRANFSYDEWRRAELLRYGREFPVVSPSHSKDSENGAGTGKKKKKRKKKK
Sbjct:    1 MPYAICCLHIFLVCLLFFSVISPGFPFWVPRHPRSCRHELRLTYERLWEPSSPPSQTAASLDRNLSTAVLDLLGSRTLGLDWGHKKIGVALTAGFSQRPLGTIINVAGHSNNATRHRPTIDQLLGILRAEGAIRIVIGYPLFRDGTLSPQANATKVFARMVADRALETGVMASDRTPFVYLWDERLTSQAAKVNIKTKSFLHSSDDVDSQAACLILEDFYRHKGYKAEVVWPNPSILGEKTTMGATNGTPPAERRPLSGRRRNDDVVFSPNVAFTSRANFSYDEWRRAELLRYGREFPVVSPSHSKDSENGAGTGKKKKKRKKKK 325          
BLAST of EWM23983.1 vs. NCBI_GenBank
Match: gi|544213784|ref|XP_005537039.1| (hypothetical protein, conserved [Cyanidioschyzon merolae strain 10D] >gi|449017601|dbj|BAM81003.1| hypothetical protein, conserved [Cyanidioschyzon merolae strain 10D])

HSP 1 Score: 95.1301 bits (235), Expect = 1.765e-19
Identity = 58/187 (31.02%), Postives = 98/187 (52.41%), Query Frame = 0
Query:   65 LSTAVLDLLGSRTLGLDWGHKKIGVALTAGFSQRPLGTI-------------INVAGHSNNATRHRPT-----IDQLLGILRAEGAIRIVIGYPLFRDGTLSPQANATKVFARMVADRALETGVMASDRTPFVYLWDERLTSQAAKVNIKT---KSFLHSSDDVDSQAACLILEDFYRHKGYKAEVV 230
            LS   +  +G R+LG+D+G +++GVA++ GF+ RPLG +             + + G+ N     + T     I+ +L +   E   +IV+G PL  DG  S Q+  T+VFA  +A   +          P VYLWDE  ++Q A+  ++    +S       +D+++AC+IL +FY ++G  AE+V
Sbjct:   22 LSAENIAQIGRRSLGIDYGFRRVGVAVSVGFAPRPLGCLPNAHRVATGPQNKVKIEGNRNRGQGRKSTVPDRLIEDVLDLALQEAVDQIVVGLPLHSDGLESDQSRETRVFAEKLAKATV---------LP-VYLWDECFSTQEARAVLEANAIRSRRRIERQIDAESACVILREFYEYRGACAELV 198          
BLAST of EWM23983.1 vs. NCBI_GenBank
Match: gi|219112769|ref|XP_002178136.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217411021|gb|EEC50950.1| predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 90.5077 bits (223), Expect = 3.739e-18
Identity = 60/174 (34.48%), Postives = 98/174 (56.32%), Query Frame = 0
Query:   72 LLGSRTLGLDWGHKKIGVALTAGFSQRPLGTIINVAGHSNNATRHRPTIDQLLGILRAEGAIRIVIGYPLFRDGTLSPQANATKVFARMVADRALET---GVMASDRTPFVYLWDERLTSQAAKVNIKTKS---FLHSSDDVDSQAACLILEDFYRHKGYKAEVVWPNPSILGE 239
            LLG +++G+D+G  + GVA+T G+  +PL  + ++     NAT      D ++  +R E A RIV+G PL ++GT++ Q N T VF   +A ++L+    GV        V L+DER TS+AA     +++    L+ +  +D+ AAC+ILE++Y   G  A+     P I+ E
Sbjct:   15 LLGVKSIGVDYGLVRTGVAVTVGYDPKPLTILKDL-----NATE---VCDAVIRCVRLEQASRIVVGLPLHKNGTIAEQTNLTLVFVAELAQKSLQELGPGVK-------VELFDERYTSKAAAARAHSRNPHQPLYGT--LDADAACIILENYYNDNGLGAQPAHLRPDIVEE 171          
BLAST of EWM23983.1 vs. NCBI_GenBank
Match: gi|1210529085|dbj|GAX12231.1| (putative holliday junction resolvase [Fistulifera solaris])

HSP 1 Score: 83.5741 bits (205), Expect = 1.071e-14
Identity = 60/171 (35.09%), Postives = 100/171 (58.48%), Query Frame = 0
Query:   72 LLGSRTLGLDWGHKKIGVALTAGFSQRPLGTIINVAGHSNNATRHRPTIDQLLGILRAEGAIRIVIGYPLFRDGTLSPQANATKVFARMVADRAL-ETGVMASDRTPFVYLWDERLTSQAA-KVNIKTKSFLHSSDDVDSQAACLILEDFYRHK-GYKAEVVWPNPSILGE 239
            LLG++++G+D+G  K GVA+T G+  +P+  + ++     N T+    +  ++ I + E A +IV+G PL ++GT++ Q N T  F   +A   L E G     + P V LWDER TS+AA  +   +KS L+ +  +D  AAC+IL+ +Y+ +    A+VV  +P+I  E
Sbjct:   86 LLGTKSIGVDYGLVKTGVAMTVGYEPKPITILRDL-----NRTQ---VVQNIVRIAQLERASQIVVGLPLHKNGTVAEQTNLTMDFCYELAACVLRELG----PQVPIV-LWDERYTSKAALALGGGSKSSLYGT--LDDSAACIILDCYYKSEYSEDAQVVQLDPAIREE 241          
BLAST of EWM23983.1 vs. NCBI_GenBank
Match: gi|731361086|ref|XP_010692166.1| (PREDICTED: uncharacterized protein LOC104905348 [Beta vulgaris subsp. vulgaris] >gi|870847680|gb|KMT00028.1| hypothetical protein BVRB_1g018570 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 82.0333 bits (201), Expect = 1.818e-14
Identity = 60/173 (34.68%), Postives = 82/173 (47.40%), Query Frame = 0
Query:   74 GSRTLGLDWGHKKIGVALTAGFSQRPLGTIINVAGHSNNATRHRPTIDQLLGILRAEGAIRIVIGYPLFRDGTLSPQANATKVFARMVADRALETGVMASDRTPFVYLWDERLTSQAAKVNIKTKSFLHSSDD--VDSQAACLILEDFYRHKGYKAEVVWPNPSILGEKTTMG 244
            G  +LG+DWG    G+AL+ GFS RPL T++N+ G             +L+ I   E     +IG P   DG  +PQ+N  +  A  +A RA E G         VYL DE  TS  A   +       S  D  +D+ AA ++LE +Y   G + E+VWP    L EK   G
Sbjct:   84 GGFSLGVDWGLSHTGLALSKGFSSRPL-TVLNLRGDKLEL--------RLIEIAEKEEVDEFIIGLPKSSDGNETPQSNKVRSVAGRLAVRAAERGWR-------VYLQDEYGTSVEAIHRMINTGVNKSGRDGKIDAYAAMMVLERYYSKFGEETELVWPKNLELQEKIRKG 240          
BLAST of EWM23983.1 vs. NCBI_GenBank
Match: gi|934116915|gb|KPL89549.1| (hypothetical protein SE16_03780 [Ardenticatena maritima])

HSP 1 Score: 78.1814 bits (191), Expect = 5.501e-14
Identity = 49/159 (30.82%), Postives = 81/159 (50.94%), Query Frame = 0
Query:   77 TLGLDWGHKKIGVALTAGFSQRPLGTIINVAGHSNNATRHRPTIDQLLGILRAEGAIRIVIGYPLFRDGTLSPQANATKVFARMVADRALETGVMASDRTPFVYLWDERLTSQAAKVNIKTKSFLHSS--DDVDSQAACLILEDFYRHKGYKAEVVWPN 233
             L +D+G +++GVA   G + RP+  + + +  S         I +L+ + RAE A +I++G PL  DG+   QA   + FA           V+A+     VYLWDER TS+ A+  +        +  + +D+ AA ++LE ++ H+G  AE V P 
Sbjct:    6 VLAVDYGKRRVGVAAGVGMAPRPVAVLPHGSLES--------LIARLVELARAEQAAKIIVGLPLNTDGSEGEQAAQCRAFAE----------VLAAQTDIPVYLWDERYTSKDAQQQMIAAGTTQKARREKLDAVAAAVMLEHYFEHQGVGAERVIPK 146          
BLAST of EWM23983.1 vs. NCBI_GenBank
Match: gi|1176547291|ref|WP_082374282.1| (Holliday junction resolvase RuvX [Ardenticatena maritima])

HSP 1 Score: 78.5666 bits (192), Expect = 7.664e-14
Identity = 49/159 (30.82%), Postives = 81/159 (50.94%), Query Frame = 0
Query:   77 TLGLDWGHKKIGVALTAGFSQRPLGTIINVAGHSNNATRHRPTIDQLLGILRAEGAIRIVIGYPLFRDGTLSPQANATKVFARMVADRALETGVMASDRTPFVYLWDERLTSQAAKVNIKTKSFLHSS--DDVDSQAACLILEDFYRHKGYKAEVVWPN 233
             L +D+G +++GVA   G + RP+  + + +  S         I +L+ + RAE A +I++G PL  DG+   QA   + FA           V+A+     VYLWDER TS+ A+  +        +  + +D+ AA ++LE ++ H+G  AE V P 
Sbjct:   33 VLAVDYGKRRVGVAAGVGMAPRPVAVLPHGSLES--------LIARLVELARAEQAAKIIVGLPLNTDGSEGEQAAQCRAFAE----------VLAAQTDIPVYLWDERYTSKDAQQQMIAAGTTQKARREKLDAVAAAVMLEHYFEHQGVGAERVIPK 173          
BLAST of EWM23983.1 vs. NCBI_GenBank
Match: gi|913354088|dbj|GAP63387.1| (putative holliday junction resolvase [Ardenticatena maritima])

HSP 1 Score: 77.0258 bits (188), Expect = 1.152e-13
Identity = 48/156 (30.77%), Postives = 80/156 (51.28%), Query Frame = 0
Query:   80 LDWGHKKIGVALTAGFSQRPLGTIINVAGHSNNATRHRPTIDQLLGILRAEGAIRIVIGYPLFRDGTLSPQANATKVFARMVADRALETGVMASDRTPFVYLWDERLTSQAAKVNIKTKSFLHSS--DDVDSQAACLILEDFYRHKGYKAEVVWPN 233
            +D+G +++GVA   G + RP+  + + +  S         I +L+ + RAE A +I++G PL  DG+   QA   + FA           V+A+     VYLWDER TS+ A+  +        +  + +D+ AA ++LE ++ H+G  AE V P 
Sbjct:    1 MDYGKRRVGVAAGVGMAPRPVAVLPHGSLES--------LIARLVELARAEQAAKIIVGLPLNTDGSEGEQAAQCRAFAE----------VLAAQTDIPVYLWDERYTSKDAQQQMIAAGTTQKARREKLDAVAAAVMLEHYFEHQGVGAERVIPK 138          
BLAST of EWM23983.1 vs. NCBI_GenBank
Match: gi|1210519896|dbj|GAX21325.1| (putative holliday junction resolvase [Fistulifera solaris])

HSP 1 Score: 80.1073 bits (196), Expect = 1.171e-13
Identity = 66/228 (28.95%), Postives = 116/228 (50.88%), Query Frame = 0
Query:   21 ISPGFPFWVPRHPRSCRHEL------RLTYERLWEPSSPPSQTAASLDRNLSTAVLDLLGSRTLGLDWGHKKIGVALTAGFSQRPLGTIINVAGHSNNATRHRPTIDQLLGILRAEGAIRIVIGYPLFRDGTLSPQANATKVFARMVADRAL-ETGVMASDRTPFVYLWDERLTSQAA-KVNIKTKSFLHSSDDVDSQAACLILEDFYRHK-GYKAEVVWPNPSILGE 239
            +SP     +   P S R ++       L  +R  + ++  +Q++  L           LG++++G+D+G  K GVA+T G+  +P+  + ++     N T+    +  ++ I   E A +IV+G PL ++GT++ Q N T  F   +A   L E G     + P V LWDER TS+AA  +   +K+ L+ +  +D  AAC+IL+ +Y+ +    A +V  +P I  E
Sbjct:   28 VSPNHIHRLDESPSSIRQQMNRFNEEELDSDRFIDAAAAVTQSSCRL-----------LGTKSIGVDYGLVKTGVAMTVGYEPKPVTILRDM-----NRTQ---VVQNIVRIAELERASQIVVGLPLHKNGTVAEQTNLTMDFCYELAVCVLRELG----PQVPIV-LWDERYTSKAALALGGGSKTSLYGT--LDDSAACIILDCYYKSEYSEDAHIVQLDPDIREE 229          
BLAST of EWM23983.1 vs. NCBI_GenBank
Match: gi|299473370|emb|CBN77768.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 80.1073 bits (196), Expect = 1.559e-13
Identity = 64/190 (33.68%), Postives = 91/190 (47.89%), Query Frame = 0
Query:   50 PSSPPSQTAASLDRNLSTAVLDLLGSRTLGLDWGHKKIGVALTAGFSQRPLGTIINVAGHSNNATRHRPTIDQLLGILRAEGAIRIVIGYPLFRDGTLSPQANATKVFARMVADRALETGVMASDRTPFVYLWDERLTS-QAAKVNIKTKSFLHSSDDVDSQAACLILEDFYRHKGY-KAEVVWPNPSIL 237
            P  P S TA       S         RTL +D+G +++G+A+  G S R +  + NV G      R      Q+L   R EG   IV+G PL R+GT +      + FA ++AD        AS  T  V+LWDER +S QAA +       + S  ++DS AA LIL+ F+   G   AE V P+  ++
Sbjct:   53 PPKPSSTTAVKTTDTRSQETKTRPSRRTLCVDYGTRRVGLAIGVGISPRAVPGVTNV-GSDLEVAR------QVLVRARGEGIRDIVVGLPLERNGTETEMCEIVRGFASVLADVG-----AASRPTAGVFLWDERFSSAQAAAMLDPYGGGMSSKVEIDSLAASLILKHFFEEGGTNNAEKVKPSTGVV 230          
The following BLAST results are available for this feature:
BLAST of EWM23983.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585105268|gb|EWM23982.1|0.000e+0100.00holliday junction resolvase [Nannochloropsis gadit... [more]
gi|544213784|ref|XP_005537039.1|1.765e-1931.02hypothetical protein, conserved [Cyanidioschyzon m... [more]
gi|219112769|ref|XP_002178136.1|3.739e-1834.48predicted protein [Phaeodactylum tricornutum CCAP ... [more]
gi|1210529085|dbj|GAX12231.1|1.071e-1435.09putative holliday junction resolvase [Fistulifera ... [more]
gi|731361086|ref|XP_010692166.1|1.818e-1434.68PREDICTED: uncharacterized protein LOC104905348 [B... [more]
gi|934116915|gb|KPL89549.1|5.501e-1430.82hypothetical protein SE16_03780 [Ardenticatena mar... [more]
gi|1176547291|ref|WP_082374282.1|7.664e-1430.82Holliday junction resolvase RuvX [Ardenticatena ma... [more]
gi|913354088|dbj|GAP63387.1|1.152e-1330.77putative holliday junction resolvase [Ardenticaten... [more]
gi|1210519896|dbj|GAX21325.1|1.171e-1328.95putative holliday junction resolvase [Fistulifera ... [more]
gi|299473370|emb|CBN77768.1|1.559e-1333.68conserved unknown protein [Ectocarpus siliculosus][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6740rna6740Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications