EWM23983.1, cds6724 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM23983.1 vs. NCBI_GenBank
Match: gi|585105268|gb|EWM23982.1| (holliday junction resolvase [Nannochloropsis gaditana] >gi|585105269|gb|EWM23983.1| holliday junction resolvase [Nannochloropsis gaditana]) HSP 1 Score: 673.315 bits (1736), Expect = 0.000e+0 Identity = 325/325 (100.00%), Postives = 325/325 (100.00%), Query Frame = 0
Query: 1 MPYAICCLHIFLVCLLFFSVISPGFPFWVPRHPRSCRHELRLTYERLWEPSSPPSQTAASLDRNLSTAVLDLLGSRTLGLDWGHKKIGVALTAGFSQRPLGTIINVAGHSNNATRHRPTIDQLLGILRAEGAIRIVIGYPLFRDGTLSPQANATKVFARMVADRALETGVMASDRTPFVYLWDERLTSQAAKVNIKTKSFLHSSDDVDSQAACLILEDFYRHKGYKAEVVWPNPSILGEKTTMGATNGTPPAERRPLSGRRRNDDVVFSPNVAFTSRANFSYDEWRRAELLRYGREFPVVSPSHSKDSENGAGTGKKKKKRKKKK 325
MPYAICCLHIFLVCLLFFSVISPGFPFWVPRHPRSCRHELRLTYERLWEPSSPPSQTAASLDRNLSTAVLDLLGSRTLGLDWGHKKIGVALTAGFSQRPLGTIINVAGHSNNATRHRPTIDQLLGILRAEGAIRIVIGYPLFRDGTLSPQANATKVFARMVADRALETGVMASDRTPFVYLWDERLTSQAAKVNIKTKSFLHSSDDVDSQAACLILEDFYRHKGYKAEVVWPNPSILGEKTTMGATNGTPPAERRPLSGRRRNDDVVFSPNVAFTSRANFSYDEWRRAELLRYGREFPVVSPSHSKDSENGAGTGKKKKKRKKKK
Sbjct: 1 MPYAICCLHIFLVCLLFFSVISPGFPFWVPRHPRSCRHELRLTYERLWEPSSPPSQTAASLDRNLSTAVLDLLGSRTLGLDWGHKKIGVALTAGFSQRPLGTIINVAGHSNNATRHRPTIDQLLGILRAEGAIRIVIGYPLFRDGTLSPQANATKVFARMVADRALETGVMASDRTPFVYLWDERLTSQAAKVNIKTKSFLHSSDDVDSQAACLILEDFYRHKGYKAEVVWPNPSILGEKTTMGATNGTPPAERRPLSGRRRNDDVVFSPNVAFTSRANFSYDEWRRAELLRYGREFPVVSPSHSKDSENGAGTGKKKKKRKKKK 325
BLAST of EWM23983.1 vs. NCBI_GenBank
Match: gi|544213784|ref|XP_005537039.1| (hypothetical protein, conserved [Cyanidioschyzon merolae strain 10D] >gi|449017601|dbj|BAM81003.1| hypothetical protein, conserved [Cyanidioschyzon merolae strain 10D]) HSP 1 Score: 95.1301 bits (235), Expect = 1.765e-19 Identity = 58/187 (31.02%), Postives = 98/187 (52.41%), Query Frame = 0
Query: 65 LSTAVLDLLGSRTLGLDWGHKKIGVALTAGFSQRPLGTI-------------INVAGHSNNATRHRPT-----IDQLLGILRAEGAIRIVIGYPLFRDGTLSPQANATKVFARMVADRALETGVMASDRTPFVYLWDERLTSQAAKVNIKT---KSFLHSSDDVDSQAACLILEDFYRHKGYKAEVV 230
LS + +G R+LG+D+G +++GVA++ GF+ RPLG + + + G+ N + T I+ +L + E +IV+G PL DG S Q+ T+VFA +A + P VYLWDE ++Q A+ ++ +S +D+++AC+IL +FY ++G AE+V
Sbjct: 22 LSAENIAQIGRRSLGIDYGFRRVGVAVSVGFAPRPLGCLPNAHRVATGPQNKVKIEGNRNRGQGRKSTVPDRLIEDVLDLALQEAVDQIVVGLPLHSDGLESDQSRETRVFAEKLAKATV---------LP-VYLWDECFSTQEARAVLEANAIRSRRRIERQIDAESACVILREFYEYRGACAELV 198
BLAST of EWM23983.1 vs. NCBI_GenBank
Match: gi|219112769|ref|XP_002178136.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217411021|gb|EEC50950.1| predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 90.5077 bits (223), Expect = 3.739e-18 Identity = 60/174 (34.48%), Postives = 98/174 (56.32%), Query Frame = 0
Query: 72 LLGSRTLGLDWGHKKIGVALTAGFSQRPLGTIINVAGHSNNATRHRPTIDQLLGILRAEGAIRIVIGYPLFRDGTLSPQANATKVFARMVADRALET---GVMASDRTPFVYLWDERLTSQAAKVNIKTKS---FLHSSDDVDSQAACLILEDFYRHKGYKAEVVWPNPSILGE 239
LLG +++G+D+G + GVA+T G+ +PL + ++ NAT D ++ +R E A RIV+G PL ++GT++ Q N T VF +A ++L+ GV V L+DER TS+AA +++ L+ + +D+ AAC+ILE++Y G A+ P I+ E
Sbjct: 15 LLGVKSIGVDYGLVRTGVAVTVGYDPKPLTILKDL-----NATE---VCDAVIRCVRLEQASRIVVGLPLHKNGTIAEQTNLTLVFVAELAQKSLQELGPGVK-------VELFDERYTSKAAAARAHSRNPHQPLYGT--LDADAACIILENYYNDNGLGAQPAHLRPDIVEE 171
BLAST of EWM23983.1 vs. NCBI_GenBank
Match: gi|1210529085|dbj|GAX12231.1| (putative holliday junction resolvase [Fistulifera solaris]) HSP 1 Score: 83.5741 bits (205), Expect = 1.071e-14 Identity = 60/171 (35.09%), Postives = 100/171 (58.48%), Query Frame = 0
Query: 72 LLGSRTLGLDWGHKKIGVALTAGFSQRPLGTIINVAGHSNNATRHRPTIDQLLGILRAEGAIRIVIGYPLFRDGTLSPQANATKVFARMVADRAL-ETGVMASDRTPFVYLWDERLTSQAA-KVNIKTKSFLHSSDDVDSQAACLILEDFYRHK-GYKAEVVWPNPSILGE 239
LLG++++G+D+G K GVA+T G+ +P+ + ++ N T+ + ++ I + E A +IV+G PL ++GT++ Q N T F +A L E G + P V LWDER TS+AA + +KS L+ + +D AAC+IL+ +Y+ + A+VV +P+I E
Sbjct: 86 LLGTKSIGVDYGLVKTGVAMTVGYEPKPITILRDL-----NRTQ---VVQNIVRIAQLERASQIVVGLPLHKNGTVAEQTNLTMDFCYELAACVLRELG----PQVPIV-LWDERYTSKAALALGGGSKSSLYGT--LDDSAACIILDCYYKSEYSEDAQVVQLDPAIREE 241
BLAST of EWM23983.1 vs. NCBI_GenBank
Match: gi|731361086|ref|XP_010692166.1| (PREDICTED: uncharacterized protein LOC104905348 [Beta vulgaris subsp. vulgaris] >gi|870847680|gb|KMT00028.1| hypothetical protein BVRB_1g018570 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 82.0333 bits (201), Expect = 1.818e-14 Identity = 60/173 (34.68%), Postives = 82/173 (47.40%), Query Frame = 0
Query: 74 GSRTLGLDWGHKKIGVALTAGFSQRPLGTIINVAGHSNNATRHRPTIDQLLGILRAEGAIRIVIGYPLFRDGTLSPQANATKVFARMVADRALETGVMASDRTPFVYLWDERLTSQAAKVNIKTKSFLHSSDD--VDSQAACLILEDFYRHKGYKAEVVWPNPSILGEKTTMG 244
G +LG+DWG G+AL+ GFS RPL T++N+ G +L+ I E +IG P DG +PQ+N + A +A RA E G VYL DE TS A + S D +D+ AA ++LE +Y G + E+VWP L EK G
Sbjct: 84 GGFSLGVDWGLSHTGLALSKGFSSRPL-TVLNLRGDKLEL--------RLIEIAEKEEVDEFIIGLPKSSDGNETPQSNKVRSVAGRLAVRAAERGWR-------VYLQDEYGTSVEAIHRMINTGVNKSGRDGKIDAYAAMMVLERYYSKFGEETELVWPKNLELQEKIRKG 240
BLAST of EWM23983.1 vs. NCBI_GenBank
Match: gi|934116915|gb|KPL89549.1| (hypothetical protein SE16_03780 [Ardenticatena maritima]) HSP 1 Score: 78.1814 bits (191), Expect = 5.501e-14 Identity = 49/159 (30.82%), Postives = 81/159 (50.94%), Query Frame = 0
Query: 77 TLGLDWGHKKIGVALTAGFSQRPLGTIINVAGHSNNATRHRPTIDQLLGILRAEGAIRIVIGYPLFRDGTLSPQANATKVFARMVADRALETGVMASDRTPFVYLWDERLTSQAAKVNIKTKSFLHSS--DDVDSQAACLILEDFYRHKGYKAEVVWPN 233
L +D+G +++GVA G + RP+ + + + S I +L+ + RAE A +I++G PL DG+ QA + FA V+A+ VYLWDER TS+ A+ + + + +D+ AA ++LE ++ H+G AE V P
Sbjct: 6 VLAVDYGKRRVGVAAGVGMAPRPVAVLPHGSLES--------LIARLVELARAEQAAKIIVGLPLNTDGSEGEQAAQCRAFAE----------VLAAQTDIPVYLWDERYTSKDAQQQMIAAGTTQKARREKLDAVAAAVMLEHYFEHQGVGAERVIPK 146
BLAST of EWM23983.1 vs. NCBI_GenBank
Match: gi|1176547291|ref|WP_082374282.1| (Holliday junction resolvase RuvX [Ardenticatena maritima]) HSP 1 Score: 78.5666 bits (192), Expect = 7.664e-14 Identity = 49/159 (30.82%), Postives = 81/159 (50.94%), Query Frame = 0
Query: 77 TLGLDWGHKKIGVALTAGFSQRPLGTIINVAGHSNNATRHRPTIDQLLGILRAEGAIRIVIGYPLFRDGTLSPQANATKVFARMVADRALETGVMASDRTPFVYLWDERLTSQAAKVNIKTKSFLHSS--DDVDSQAACLILEDFYRHKGYKAEVVWPN 233
L +D+G +++GVA G + RP+ + + + S I +L+ + RAE A +I++G PL DG+ QA + FA V+A+ VYLWDER TS+ A+ + + + +D+ AA ++LE ++ H+G AE V P
Sbjct: 33 VLAVDYGKRRVGVAAGVGMAPRPVAVLPHGSLES--------LIARLVELARAEQAAKIIVGLPLNTDGSEGEQAAQCRAFAE----------VLAAQTDIPVYLWDERYTSKDAQQQMIAAGTTQKARREKLDAVAAAVMLEHYFEHQGVGAERVIPK 173
BLAST of EWM23983.1 vs. NCBI_GenBank
Match: gi|913354088|dbj|GAP63387.1| (putative holliday junction resolvase [Ardenticatena maritima]) HSP 1 Score: 77.0258 bits (188), Expect = 1.152e-13 Identity = 48/156 (30.77%), Postives = 80/156 (51.28%), Query Frame = 0
Query: 80 LDWGHKKIGVALTAGFSQRPLGTIINVAGHSNNATRHRPTIDQLLGILRAEGAIRIVIGYPLFRDGTLSPQANATKVFARMVADRALETGVMASDRTPFVYLWDERLTSQAAKVNIKTKSFLHSS--DDVDSQAACLILEDFYRHKGYKAEVVWPN 233
+D+G +++GVA G + RP+ + + + S I +L+ + RAE A +I++G PL DG+ QA + FA V+A+ VYLWDER TS+ A+ + + + +D+ AA ++LE ++ H+G AE V P
Sbjct: 1 MDYGKRRVGVAAGVGMAPRPVAVLPHGSLES--------LIARLVELARAEQAAKIIVGLPLNTDGSEGEQAAQCRAFAE----------VLAAQTDIPVYLWDERYTSKDAQQQMIAAGTTQKARREKLDAVAAAVMLEHYFEHQGVGAERVIPK 138
BLAST of EWM23983.1 vs. NCBI_GenBank
Match: gi|1210519896|dbj|GAX21325.1| (putative holliday junction resolvase [Fistulifera solaris]) HSP 1 Score: 80.1073 bits (196), Expect = 1.171e-13 Identity = 66/228 (28.95%), Postives = 116/228 (50.88%), Query Frame = 0
Query: 21 ISPGFPFWVPRHPRSCRHEL------RLTYERLWEPSSPPSQTAASLDRNLSTAVLDLLGSRTLGLDWGHKKIGVALTAGFSQRPLGTIINVAGHSNNATRHRPTIDQLLGILRAEGAIRIVIGYPLFRDGTLSPQANATKVFARMVADRAL-ETGVMASDRTPFVYLWDERLTSQAA-KVNIKTKSFLHSSDDVDSQAACLILEDFYRHK-GYKAEVVWPNPSILGE 239
+SP + P S R ++ L +R + ++ +Q++ L LG++++G+D+G K GVA+T G+ +P+ + ++ N T+ + ++ I E A +IV+G PL ++GT++ Q N T F +A L E G + P V LWDER TS+AA + +K+ L+ + +D AAC+IL+ +Y+ + A +V +P I E
Sbjct: 28 VSPNHIHRLDESPSSIRQQMNRFNEEELDSDRFIDAAAAVTQSSCRL-----------LGTKSIGVDYGLVKTGVAMTVGYEPKPVTILRDM-----NRTQ---VVQNIVRIAELERASQIVVGLPLHKNGTVAEQTNLTMDFCYELAVCVLRELG----PQVPIV-LWDERYTSKAALALGGGSKTSLYGT--LDDSAACIILDCYYKSEYSEDAHIVQLDPDIREE 229
BLAST of EWM23983.1 vs. NCBI_GenBank
Match: gi|299473370|emb|CBN77768.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 80.1073 bits (196), Expect = 1.559e-13 Identity = 64/190 (33.68%), Postives = 91/190 (47.89%), Query Frame = 0
Query: 50 PSSPPSQTAASLDRNLSTAVLDLLGSRTLGLDWGHKKIGVALTAGFSQRPLGTIINVAGHSNNATRHRPTIDQLLGILRAEGAIRIVIGYPLFRDGTLSPQANATKVFARMVADRALETGVMASDRTPFVYLWDERLTS-QAAKVNIKTKSFLHSSDDVDSQAACLILEDFYRHKGY-KAEVVWPNPSIL 237
P P S TA S RTL +D+G +++G+A+ G S R + + NV G R Q+L R EG IV+G PL R+GT + + FA ++AD AS T V+LWDER +S QAA + + S ++DS AA LIL+ F+ G AE V P+ ++
Sbjct: 53 PPKPSSTTAVKTTDTRSQETKTRPSRRTLCVDYGTRRVGLAIGVGISPRAVPGVTNV-GSDLEVAR------QVLVRARGEGIRDIVVGLPLERNGTETEMCEIVRGFASVLADVG-----AASRPTAGVFLWDERFSSAQAAAMLDPYGGGMSSKVEIDSLAASLILKHFFEEGGTNNAEKVKPSTGVV 230 The following BLAST results are available for this feature:
BLAST of EWM23983.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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