rna674, rna674 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna674
Unique Name	rna674
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1968
Alignment location	CM002456.1:136283..139026 -

Link to JBrowse

Properties


Property Name	Value
Product	major intrinsic protein
Orig transcript id	gnl\|cribi\|Naga_100379g5.1020.mrna
Orig protein id	gnl\|cribi\|Naga_100379g5.1020
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002456.1	supercontig	CM002456.1:136283..139026 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100379g5	gene647	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM29997.1	cds674	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna674	rna674-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002456.1:136283..139026-
coding sequence from alignment at CM002456.1:136283..139026-

mRNA sequence

>rna674 ID=rna674|Name=rna674|organism=Nannochloropsis gaditana|type=mRNA|length=1968bp
ATGGCTCGGGATCCGAAGCTCATTTATTACATTAAAAACCTGCTTTTGGA
ACGGGGGTCGGATAACCGTCCTCCCTCGGAAGAAAGTATCATGGAACGAC
TGGTAGTTGACCACCCTTTCTCCTCTTCGTCCCCGCCTCCCCTCCTGCCC
GTGGAACGTCCCACCGCCCGCTTCACCGACCTGGCTGGCATCGACGCCGT
CCTGCAAGATGTGCGGGAGCTGATCGAGTACCCCCTCAAATACCCGGAGG
TATACGCGTATCTTGGGGTTGAACCTCCCCGTGGGATCCTTCTGCACGGG
CCGCCGGGGTGTGGGAAAACCTTGTTGGCGAACGCCGTGGCAGGGGAGCT
GGGCGTGGCGTTTTTGAAGGTGTCGGCGCCCGAGGTGGTGAGTGGGATGT
CGGGAGAATCCGAGCAAAAAATCCGGGAGCTCTTCGCGACGGCCCGTCAG
GCCGCGCCGGCCCTGGTCTTTATCGACGAAGTGGACGCGATCACCCCCAA
GAGGGAGACGGCGTCCCGGGGCATGGAACGTCGGATTGTGGCCCAGCTTT
TGACGTGCATGGATGCCCTTTCCCTGGAGGAGACGGGGGGCAAACCCGTC
TTGGTCATTGGCGCCACGAACCGCCCGGATGCCCTCGACGCGGCTTTGCG
GCGGGCGGGCCGGTTCGACCGGGAGATTTCCCTCGGAGTGCCAGATTTAG
AGGCCCGACGGAGGATTTTGGAGGTGATGACTAAGAAAATGCGGCTGAGC
GGGGACTTTGATTTGGGAGAAATTGCGCGGAGGACACCGGGATATGTCGG
GGCCGATCTAGCCAGCTTGACGAAGGAAGCGGCGGTGCTTGCCATCAACC
GGATTTTCCGCAGCATCGTGGCGGACACGGGAGGAGGCAAGACCAAGGGA
AAGGAGGGGGAGGTCCGGGAGGGCAGCGACAAGGAAGGATATGACACGAT
ACCTTCGGAGCCCCTGACTCGGCCTTACCCTCCTAATGCCTCGGGCCTTA
CTACATTGACGGACGCGTATGCTTTACCTGCCATGGACACTGATCCCCTG
GAATCGAGCGATCTATCCTCTGCGAAAGTGGTCCCCGTGGCGCTCCCGCT
GCCCGCCTCCCCCGCTCCCACGGCTCCGCCGTCCCTCCCTCCCTCCCTCC
CGCCCGCCCTCCTTGCCTCCCTCGCCATCACCATGCCGGACTTCTTCTCG
GCCCTGAAAAAGGTCCAACCGTCGGCCAAACGCGAAGGCTTCGCCGCCGT
CCCCGACGTGAGTTGGCAGGACGTGGGGGCGCTGGCGCCTGTGCGCGAGG
AGCTGTCCATGTCCGTCTTGGAGCCCATCGCCCATCCGGAAATCTTCCTC
TCCCTGGGATTGACTGTCCCTGCCGGCGTCCTCCTCTTTGGGCCTCCCGG
GTGCGGGAAGACGCTGCTGGCGAAGGCCATCGCCCATGAGAGCGGGGCCA
ATTTTATCTCGGTCAAAGGTCCGGAGCTCTTGGACAAATACGTCGGCGAG
TCGGAGCGGGCGGTGCGGCAGGTCTTCACTCGGGCGCGGGCCTCCGCACC
TTGCATTGTGTTTTTCGACGAATTGGACGCCTTATGTCCGAAACGAGGGA
TGGGCGGAGGGGGGGAAGGAGGCGGGGGCAGTGGGGTGAGCGAGCGGGTG
GTGAACCAGCTCTTGACGGAGATGGACGGATTGGAAGGGCGTCGGCACGT
CTTTGTGATCGCGGCCACGAACAGACCGGAGCTGATCGACCCCGCCATGC
TCCGTCCAGGGAGGCTAGACAAGCTCCTGTACGTGCCCCTGCCGGGACCG
GAGGACCGGGCGGCGATTCTGAAAGCGGTCTCTCGGGACATGGCGGTGGA
TGCTGCGGAGGTGGATCTAGAAGCCCTTGGGAGGGATCACAGGGCAGAGG
GCTACAGCGGGGCAGACATGGCCGCCTTAGTTCGCGAAGCAGGGGTGAAC
AGGGAAAGCCGTTGGTGA

protein sequence of rna674

>rna674-protein ID=rna674-protein|Name=rna674|organism=Nannochloropsis gaditana|type=polypeptide|length=496bp
MLSLVRDPASGGVVDIIMPRTSSAPHQVEDESKQPLMPAQDNKVKDNVIE
SQAMSEEETASAGHSNAERNKSHLSEEHGDKKVSEGHRKHRRYLTAGAQC
CSQTFTILQNLLAVPMTEALGTLTLTLVVGLLSRPAAGVDSLTAAIGVAA
VLLAMINTGAPISGAHYNPAVTFALLLIGRVSPFRALVYIASQTVGAIGG
AYLARGLAASDQLADPFLPEGVTGELALVEISFTYALVMVVIHTAFARAQ
QPNAYAGVAICATLVTGASLGAVMNPAVSAGLYVAARHKDEGEGGGAGGG
GGGAVGPLDVANGRRFNRGLCILRGQCSRSLVPVWKGVGRSTQEETLPGR
ESAEGRRERGPRSPSSRGDLLPALSGYLPTCLCADTSPGIMPCQGLCDGV
PGSFPPHPSSRPQQQLLHPSLPPYLGRFQRSFIGRPCLCRGLRQRRPLQP
SRYPRGFSFPASEEKNSPGPGLRNGATPRRSVRGGAGSVRARSRPL

mRNA from alignment at CM002456.1:136283..139026-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna674 ID=rna674|Name=rna674|organism=Nannochloropsis gaditana|type=mRNA|length=2744bp|location=Sequence derived from alignment at CM002456.1:136283..139026- (Nannochloropsis gaditana)
ACTTTATAAAAGTGGCATAGTTTTCAATGCATAGCTGTGCAGTCTTCACG
CTCAAACCTTACTGTGACCTCCCTGGTACAATATCTTTCTTATGCTTTCC
TTGGTCAGGGATCCGGCTTCCGGGGGTGTTGTGGATATCATTATGCCGCG
TACATCCTCAGCACCTCACCAAGTAGAGGACGAGTCGAAGCAGCCATTGA
TGCCTGCCCAGGATAACAAGGTTAAAGACAATGTCATAGAGTCGCAGGCC
ATGTCAGAAGAGGAAACTGCGTCGGCTGGTCATAGCAACGCTGAAAGAAA
TAAAAGTCATTTATCAGAAGAGCACGGTGACAAGAAGGTCTCAGAGGGGC
ATCGCAAGCATCGCCGATACCTCACAGCGGGTGCGCAATGCTGCTCTCAA
ACATTTACGATCCTGCAAAATCTTCTAGCTGTTCCCATGACGGAAGCTCT
TGGTACCCTCACCCTTACGCTGGTAGTTGGTCTGCTCTCCCGTCCCGCCG
CAGGCGTAGACAGCCTTACGGCCGCCATTGGAGTCGCCGCCGTCTTATTG
GCCATGATCAACACAGGCGCTCCGATATCGGGCGCGCATTACAACCCGGC
GGTGACCTTCGCATTGCTTCTCATCGGACGAGTCTCCCCTTTCCGGGCCC
TGGTTTACATAGCCAGCCAAACCGTCGGGGCCATTGGGGGGGCCTACCTG
GCCCGAGGTCTGGCTGCCTCTGATCAACTAGCAGATCCATTCTTGCCGGA
GGGAGTTACCGGGGAGCTAGCCCTGGTCGAGATCAGCTTTACATACGCCT
TGGTCATGGTGGTGATCCACACCGCTTTTGCCCGAGCACAGCAACCCAAT
GCCTATGCGGGCGTGGCGATATGTGCGACGTTGGTGACAGGGGCCTCTCT
GGGGGCGGTCATGAATCCGGCGGTGTCTGCTGGGCTTTATGTGGCTGCCA
GGCACAAGGACGAGGGGGAGGGAGGGGGGGCAGGGGGAGGGGGAGGCGGG
GCTGTGGGTCCGTTGGATGTTGCCAATGGCAGGCGGTTTAATCGCGGCTT
GTGCATTTTACGTGGTCAATGCAGCAGAAGCCTCGTGCCCGTATGGAAGG
GCGTCGGCCGGTCCACACAGGAGGAGACCCTCCCAGGGAGAGAGAGCGCA
GAGGGAAGGAGGGAGAGAGGACCGAGAAGCCCTTCTTCCCGAGGCGACCT
CCTTCCCGCCCTATCCGGCTACCTCCCCACCTGCCTATGCGCGGACACTT
CTCCGGGTATCATGCCGTGCCAGGGCCTATGTGACGGAGTTCCAGGGAGC
TTTCCTCCTCACCCTAGTTCTCGCCCTCAGCAGCAGCTCCTCCACCCCTC
CCTCCCCCCTTACCTCGGCCGTTTCCAGCGGTCTTTTATTGGCCGGCCTT
GTCTTTGCCGGGGCCTACGTCAGCGGCGGCCACTTCAACCCAGCCGTTAC
CCTCGGGGTTTTTCTTTTCCGGCCTCGGAGGAAAAAAATTCCCCGGGCCC
TGGCCTACGTAACGGTGCAACTCCTCGCCGCTCTGTTCGCGGGGGGGCTG
GCTCGGTCCGCGCTCGGTCGCGGCCGTTGTAAGAAGGCCCTCCCTCACCG
CGGGGTCTCCCACGGATACCCAGGCGCGTGGGGCGCGGAAGCCGTGTTCA
CCACCCTCTTGGTCTTGACCATCCTCTCCCAGCGGTCCCCCGGGACTCAG
CAACAGGCATACTTTGGACTGGCGGTCGGGGCTGTCTTGACGGGCGGCTT
GCTCGCCTCCGCCTCCATTTCGGGGGGAGGGTTGAATCCCGCCGTCGTCA
CGGGCCTGTATGCTTGGAGTGCGGACAAGGAGCAGGGGAGGGGGCTTTGG
GTCTATTGGCTAGGCCCGATGTGTGGTTCTATAGTCGCGGTGTTGAGTGC
TTGGGCCCTGGGTACGAGCGGGCGGAGTTTACGGGAGGAAAAGGAGGGCA
GGCGGGAGGGAGCCACCGAAAAAAAGGGTGGAGACATGGAAGAAGAGAAG
GAAGACAATGAGGGGGAGGGAGGGAAGGTCGAGGGCGGGGAGGCGTCGAT
GGAAGAGGGGTGGGAAGGAAGCGTGGAGGATCGTGAGGGAAAAACAAAGC
AGTTGGGAGAGTCGCAATGACTTGATGTGAACAGCGCGCATGGACGGAAT
ATCATACAATCGTTGAGAGGGAACTTTGTGTGGACGAACGCGTAAGACCA
ATGTGATGAGATCATAACCGTGGGAGTGTCAGAAAAAGTGCAGCATATTA
CAATGGTTTGTACATAGGTCATGCACGATTTGTTGGTCGCAAATAAAAAT
GCGGAAAAGGAGCTTCTCCAGCATCGCAAAGAGCCACATTAGGTCATCCG
ATTTCATAAATTTCTTAAATCAGGGTTGAGAACTATTTTCCAAGTTCAAC
GAATGGCAGCACAGGCTGCAGTGTTTTGAACAGGCACTCCCTCAAAAAAT
TAAATATTCCACTTTTGCCGTAGAAGGTGATTTTATCATCAACGTAGTTG
TGTCAGAAAACACATTTTAACGGTTCACCGCCAGGGTTGAAAAGAAACTG
CACCATTACCACCTTGCGGAGGGGCTTGAGTTGTACTCACGCCGAAGCTT
CATACTGATATGGACAAACTGATATATTGATGTTCAGGAATTGTAATTAA
TATCTGAAGACATGTCAGGGGTCGAGGCTTTGTCAGAAATTCGCCGCCGC
ACGCTTGATAACCTCCTGTCGAACGTGTCTCAGAAAATCCCTCC

Coding sequence (CDS) from alignment at CM002456.1:136283..139026-

>rna674 ID=rna674|Name=rna674|organism=Nannochloropsis gaditana|type=CDS|length=1491bp|location=Sequence derived from alignment at CM002456.1:136283..139026- (Nannochloropsis gaditana)
ATGCTTTCCTTGGTCAGGGATCCGGCTTCCGGGGGTGTTGTGGATATCAT
TATGCCGCGTACATCCTCAGCACCTCACCAAGTAGAGGACGAGTCGAAGC
AGCCATTGATGCCTGCCCAGGATAACAAGGTTAAAGACAATGTCATAGAG
TCGCAGGCCATGTCAGAAGAGGAAACTGCGTCGGCTGGTCATAGCAACGC
TGAAAGAAATAAAAGTCATTTATCAGAAGAGCACGGTGACAAGAAGGTCT
CAGAGGGGCATCGCAAGCATCGCCGATACCTCACAGCGGGTGCGCAATGC
TGCTCTCAAACATTTACGATCCTGCAAAATCTTCTAGCTGTTCCCATGAC
GGAAGCTCTTGGTACCCTCACCCTTACGCTGGTAGTTGGTCTGCTCTCCC
GTCCCGCCGCAGGCGTAGACAGCCTTACGGCCGCCATTGGAGTCGCCGCC
GTCTTATTGGCCATGATCAACACAGGCGCTCCGATATCGGGCGCGCATTA
CAACCCGGCGGTGACCTTCGCATTGCTTCTCATCGGACGAGTCTCCCCTT
TCCGGGCCCTGGTTTACATAGCCAGCCAAACCGTCGGGGCCATTGGGGGG
GCCTACCTGGCCCGAGGTCTGGCTGCCTCTGATCAACTAGCAGATCCATT
CTTGCCGGAGGGAGTTACCGGGGAGCTAGCCCTGGTCGAGATCAGCTTTA
CATACGCCTTGGTCATGGTGGTGATCCACACCGCTTTTGCCCGAGCACAG
CAACCCAATGCCTATGCGGGCGTGGCGATATGTGCGACGTTGGTGACAGG
GGCCTCTCTGGGGGCGGTCATGAATCCGGCGGTGTCTGCTGGGCTTTATG
TGGCTGCCAGGCACAAGGACGAGGGGGAGGGAGGGGGGGCAGGGGGAGGG
GGAGGCGGGGCTGTGGGTCCGTTGGATGTTGCCAATGGCAGGCGGTTTAA
TCGCGGCTTGTGCATTTTACGTGGTCAATGCAGCAGAAGCCTCGTGCCCG
TATGGAAGGGCGTCGGCCGGTCCACACAGGAGGAGACCCTCCCAGGGAGA
GAGAGCGCAGAGGGAAGGAGGGAGAGAGGACCGAGAAGCCCTTCTTCCCG
AGGCGACCTCCTTCCCGCCCTATCCGGCTACCTCCCCACCTGCCTATGCG
CGGACACTTCTCCGGGTATCATGCCGTGCCAGGGCCTATGTGACGGAGTT
CCAGGGAGCTTTCCTCCTCACCCTAGTTCTCGCCCTCAGCAGCAGCTCCT
CCACCCCTCCCTCCCCCCTTACCTCGGCCGTTTCCAGCGGTCTTTTATTG
GCCGGCCTTGTCTTTGCCGGGGCCTACGTCAGCGGCGGCCACTTCAACCC
AGCCGTTACCCTCGGGGTTTTTCTTTTCCGGCCTCGGAGGAAAAAAATTC
CCCGGGCCCTGGCCTACGTAACGGTGCAACTCCTCGCCGCTCTGTTCGCG
GGGGGGCTGGCTCGGTCCGCGCTCGGTCGCGGCCGTTGTAA

Synonyms

Publications