EWM29997.1, cds674 (CDS) Nannochloropsis gaditana

Overview
NameEWM29997.1
Unique Namecds674
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002456.1:137445..138935 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM29997.1
Productmajor intrinsic protein
Orig transcript idgnl|cribi|Naga_100379g5.1020.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002456.1supercontigCM002456.1:137445..138935 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0006810transport
Vocabulary: Molecular Function
TermDefinition
GO:0005215transporter activity
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR022357MIP_CS
IPR023271Aquaporin-like
IPR000425MIP
Homology
BLAST of EWM29997.1 vs. NCBI_GenBank
Match: gi|585112607|gb|EWM29997.1| (major intrinsic protein [Nannochloropsis gaditana])

HSP 1 Score: 996.497 bits (2575), Expect = 0.000e+0
Identity = 496/496 (100.00%), Postives = 496/496 (100.00%), Query Frame = 0
Query:    1 MLSLVRDPASGGVVDIIMPRTSSAPHQVEDESKQPLMPAQDNKVKDNVIESQAMSEEETASAGHSNAERNKSHLSEEHGDKKVSEGHRKHRRYLTAGAQCCSQTFTILQNLLAVPMTEALGTLTLTLVVGLLSRPAAGVDSLTAAIGVAAVLLAMINTGAPISGAHYNPAVTFALLLIGRVSPFRALVYIASQTVGAIGGAYLARGLAASDQLADPFLPEGVTGELALVEISFTYALVMVVIHTAFARAQQPNAYAGVAICATLVTGASLGAVMNPAVSAGLYVAARHKDEGEGGGAGGGGGGAVGPLDVANGRRFNRGLCILRGQCSRSLVPVWKGVGRSTQEETLPGRESAEGRRERGPRSPSSRGDLLPALSGYLPTCLCADTSPGIMPCQGLCDGVPGSFPPHPSSRPQQQLLHPSLPPYLGRFQRSFIGRPCLCRGLRQRRPLQPSRYPRGFSFPASEEKNSPGPGLRNGATPRRSVRGGAGSVRARSRPL 496
            MLSLVRDPASGGVVDIIMPRTSSAPHQVEDESKQPLMPAQDNKVKDNVIESQAMSEEETASAGHSNAERNKSHLSEEHGDKKVSEGHRKHRRYLTAGAQCCSQTFTILQNLLAVPMTEALGTLTLTLVVGLLSRPAAGVDSLTAAIGVAAVLLAMINTGAPISGAHYNPAVTFALLLIGRVSPFRALVYIASQTVGAIGGAYLARGLAASDQLADPFLPEGVTGELALVEISFTYALVMVVIHTAFARAQQPNAYAGVAICATLVTGASLGAVMNPAVSAGLYVAARHKDEGEGGGAGGGGGGAVGPLDVANGRRFNRGLCILRGQCSRSLVPVWKGVGRSTQEETLPGRESAEGRRERGPRSPSSRGDLLPALSGYLPTCLCADTSPGIMPCQGLCDGVPGSFPPHPSSRPQQQLLHPSLPPYLGRFQRSFIGRPCLCRGLRQRRPLQPSRYPRGFSFPASEEKNSPGPGLRNGATPRRSVRGGAGSVRARSRPL
Sbjct:    1 MLSLVRDPASGGVVDIIMPRTSSAPHQVEDESKQPLMPAQDNKVKDNVIESQAMSEEETASAGHSNAERNKSHLSEEHGDKKVSEGHRKHRRYLTAGAQCCSQTFTILQNLLAVPMTEALGTLTLTLVVGLLSRPAAGVDSLTAAIGVAAVLLAMINTGAPISGAHYNPAVTFALLLIGRVSPFRALVYIASQTVGAIGGAYLARGLAASDQLADPFLPEGVTGELALVEISFTYALVMVVIHTAFARAQQPNAYAGVAICATLVTGASLGAVMNPAVSAGLYVAARHKDEGEGGGAGGGGGGAVGPLDVANGRRFNRGLCILRGQCSRSLVPVWKGVGRSTQEETLPGRESAEGRRERGPRSPSSRGDLLPALSGYLPTCLCADTSPGIMPCQGLCDGVPGSFPPHPSSRPQQQLLHPSLPPYLGRFQRSFIGRPCLCRGLRQRRPLQPSRYPRGFSFPASEEKNSPGPGLRNGATPRRSVRGGAGSVRARSRPL 496          
BLAST of EWM29997.1 vs. NCBI_GenBank
Match: gi|553185707|ref|XP_005854294.1| (major intrinsic protein, partial [Nannochloropsis gaditana CCMP526] >gi|422294765|gb|EKU22065.1| major intrinsic protein, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 552.747 bits (1423), Expect = 0.000e+0
Identity = 276/276 (100.00%), Postives = 276/276 (100.00%), Query Frame = 0
Query:    6 RDPASGGVVDIIMPRTSSAPHQVEDESKQPLMPAQDNKVKDNVIESQAMSEEETASAGHSNAERNKSHLSEEHGDKKVSEGHRKHRRYLTAGAQCCSQTFTILQNLLAVPMTEALGTLTLTLVVGLLSRPAAGVDSLTAAIGVAAVLLAMINTGAPISGAHYNPAVTFALLLIGRVSPFRALVYIASQTVGAIGGAYLARGLAASDQLADPFLPEGVTGELALVEISFTYALVMVVIHTAFARAQQPNAYAGVAICATLVTGASLGAVMNPAVSAG 281
            RDPASGGVVDIIMPRTSSAPHQVEDESKQPLMPAQDNKVKDNVIESQAMSEEETASAGHSNAERNKSHLSEEHGDKKVSEGHRKHRRYLTAGAQCCSQTFTILQNLLAVPMTEALGTLTLTLVVGLLSRPAAGVDSLTAAIGVAAVLLAMINTGAPISGAHYNPAVTFALLLIGRVSPFRALVYIASQTVGAIGGAYLARGLAASDQLADPFLPEGVTGELALVEISFTYALVMVVIHTAFARAQQPNAYAGVAICATLVTGASLGAVMNPAVSAG
Sbjct:    1 RDPASGGVVDIIMPRTSSAPHQVEDESKQPLMPAQDNKVKDNVIESQAMSEEETASAGHSNAERNKSHLSEEHGDKKVSEGHRKHRRYLTAGAQCCSQTFTILQNLLAVPMTEALGTLTLTLVVGLLSRPAAGVDSLTAAIGVAAVLLAMINTGAPISGAHYNPAVTFALLLIGRVSPFRALVYIASQTVGAIGGAYLARGLAASDQLADPFLPEGVTGELALVEISFTYALVMVVIHTAFARAQQPNAYAGVAICATLVTGASLGAVMNPAVSAG 276          
BLAST of EWM29997.1 vs. NCBI_GenBank
Match: gi|585109838|gb|EWM27571.1| (major intrinsic protein [Nannochloropsis gaditana])

HSP 1 Score: 104.375 bits (259), Expect = 2.090e-20
Identity = 68/182 (37.36%), Postives = 106/182 (58.24%), Query Frame = 0
Query:  116 MTEALGTLTLTLVVGLLSRPAAGVDSLTAAIGVAAVLLAMINTGAPISGAHYNPAVTFALLLIGRVSPFRALVYIASQTVGAIGGAYLARGLAASDQLADPFLPEGV-----TGELALV--EISFTYALVMVVIHTAFARAQQPNAYAGVAICATLVTGASLGAVMNPAVSAGLYVAARHKD 290
            + E LGT  +T+  GLL +  A +     A+GVAAVL+ +I+ GA +SGA+YNP+++ ALLL+G++ P + L YI+ Q VGA+ G  L + L          LP+G       G +A    E  F++AL++  + T  +++Q  N++ G AI   +  G + GA MNPAV+ GL+  A H+ 
Sbjct:   70 IMETLGTTIITVTAGLLGK--ADMSPGLKALGVAAVLMPLIHAGARVSGANYNPSISVALLLLGKMPPAQCLFYISCQLVGALIGGVLTKVL----------LPQGAMDPSSVGTIATCVPEALFSFALILTALQTTVSKSQSRNSFFGSAISIVVFLGVAFGAGMNPAVAGGLFAGAGHQK 239          
BLAST of EWM29997.1 vs. NCBI_GenBank
Match: gi|821340966|gb|AKH32540.1| (Glycerol uptake facilitator protein [candidate division SR1 bacterium Aalborg_AAW-1])

HSP 1 Score: 86.6557 bits (213), Expect = 6.471e-16
Identity = 64/171 (37.43%), Postives = 92/171 (53.80%), Query Frame = 0
Query:  116 MTEALGTLTLTLVVGLLSRPAAGVDSLTAAIGVAAVLLAMINTGAPISGAHYNPAVTFALLLIGRVSPFRALVYIASQTVGAIGGAYLARGLAASDQLADPFLPEGVTGELALVEISFTYALVMVVIHTAFARAQQPNAYAGVAI-----CATLVTGASLGAVMNPAVSAG 281
            +TEALGT  L LV+GL+   A    S  A + +  VL+ M+  G  ISGAHYNPAVT  L L  ++S  +A  YI +Q +GA   A+++  L     + +   P   +    + E+ FT+ALV VV++ A  +A + N+Y G+AI      A    G   G   NPAV+ G
Sbjct:    5 VTEALGTFFLVLVIGLVVAQA----SEFAPLAIGTVLMVMVYAGGHISGAHYNPAVTVGLALSDKISWNKAGGYILAQLIGAFLAAWVSYMLVGQALVVE---PTAASRTSIVAELIFTFALVYVVLNVAATKATEGNSYYGLAIGFTVMAAAFAVGGISGGAFNPAVAFG 168          
BLAST of EWM29997.1 vs. NCBI_GenBank
Match: gi|1071447193|ref|WP_069871961.1| (porin [Streptomyces sp. SPMA113])

HSP 1 Score: 86.2705 bits (212), Expect = 1.416e-15
Identity = 66/175 (37.71%), Postives = 95/175 (54.29%), Query Frame = 0
Query:  116 MTEALGTLTLTLVVGLLSRPAAGVDSLTAA----IGVAAVLLAMINTGAPISGAHYNPAVTFALLLIGRVSPFRALVYIASQTVGAIGGAYLARGLAASDQLADPFLPEGVTGELALVEISFTYALVMVVIHTAFARAQQPNAYAGVAICATLVTGASL-----GAVMNPAVSAG 281
            + E +GTL L L +      AA V  LT A    + +  VL+ M+  G  +SGAHYNPAVT A+LL GR++   A  Y+ +Q VG   GA +AR +   D++    L     G   LVE+ FT+AL  VV++ A + +   N++ G+AI  T++ GA       G   NPAV+ G
Sbjct:    5 VAEFIGTLFLVLTI------AAAV--LTKAPLAPLAIGGVLMVMVYAGGHVSGAHYNPAVTLAVLLRGRITAADAATYVVAQFVGGAVGALIARWVVDPDKVTALSLSGRQLGAALLVEVLFTFALAYVVLNVATSSSHPDNSFYGLAIGFTVLAGAIAVGGISGGAFNPAVAVG 171          
BLAST of EWM29997.1 vs. NCBI_GenBank
Match: gi|1052422201|emb|SCF68560.1| (aquaporin Z [Streptomyces sp. MnatMP-M27])

HSP 1 Score: 86.2705 bits (212), Expect = 1.472e-15
Identity = 66/175 (37.71%), Postives = 95/175 (54.29%), Query Frame = 0
Query:  116 MTEALGTLTLTLVVGLLSRPAAGVDSLTAA----IGVAAVLLAMINTGAPISGAHYNPAVTFALLLIGRVSPFRALVYIASQTVGAIGGAYLARGLAASDQLADPFLPEGVTGELALVEISFTYALVMVVIHTAFARAQQPNAYAGVAICATLVTGASL-----GAVMNPAVSAG 281
            + E +GTL L L +      AA V  LT A    + +  VL+ M+  G  +SGAHYNPAVT A+LL GR++   A  Y+ +Q VG   GA +AR +   D++    L     G   LVE+ FT+AL  VV++ A + +   N++ G+AI  T++ GA       G   NPAV+ G
Sbjct:    5 VAEFIGTLFLVLTI------AAAV--LTKAPLAPLAIGGVLMVMVYAGGHVSGAHYNPAVTLAVLLRGRITATDAATYVVAQFVGGAVGALIARWVVDPDKVTALSLAGRQLGAALLVEVLFTFALAYVVLNVATSSSHPDNSFYGLAIGFTVLAGAIAVGGISGGAFNPAVAVG 171          
BLAST of EWM29997.1 vs. NCBI_GenBank
Match: gi|584454748|emb|CDM59652.1| (Glycerol uptake facilitator or related permease [Rhizobium favelukesii])

HSP 1 Score: 85.5001 bits (210), Expect = 1.813e-15
Identity = 68/170 (40.00%), Postives = 90/170 (52.94%), Query Frame = 0
Query:  117 TEALGTLTLTLVVGLLSRPAAGVDSLTAAIGVAAVLLAMINTGAPISGAHYNPAVTFALLLIGRVSPFRALVYIASQTVGAIGGAYLARGLAASDQLADPFLPEGVTGELALVEISFTYALVMVVIHTAFARAQQPNAYAGVAICATLVTGASL-----GAVMNPAVSAG 281
             E +GT  L L +G     AA    + A + + +VL+ MI  G  ISGAHYNPAVT  + L GR      L Y  +Q +GA+  A++  GLA       PF+   V G   L E  FT+ALV VV++ A A A   N+Y G+AI  T++ GA       GA  NPAV+ G
Sbjct:    6 VEFIGTFFLVLTIGCTGMAAA--PGVIAPLAIGSVLMVMIYAGGHISGAHYNPAVTLGVYLRGRFPAADVLPYWGAQLLGAVVAAWIV-GLALKGAPVSPFVAP-VLGAF-LAEFLFTFALVYVVLNVATADATDGNSYFGLAIGFTVLAGAFAVGQVSGAAFNPAVAIG 170          
BLAST of EWM29997.1 vs. NCBI_GenBank
Match: gi|739206727|ref|WP_037070115.1| (porin [Rhizobium favelukesii])

HSP 1 Score: 85.1149 bits (209), Expect = 2.160e-15
Identity = 68/170 (40.00%), Postives = 90/170 (52.94%), Query Frame = 0
Query:  117 TEALGTLTLTLVVGLLSRPAAGVDSLTAAIGVAAVLLAMINTGAPISGAHYNPAVTFALLLIGRVSPFRALVYIASQTVGAIGGAYLARGLAASDQLADPFLPEGVTGELALVEISFTYALVMVVIHTAFARAQQPNAYAGVAICATLVTGASL-----GAVMNPAVSAG 281
             E +GT  L L +G     AA    + A + + +VL+ MI  G  ISGAHYNPAVT  + L GR      L Y  +Q +GA+  A++  GLA       PF+   V G   L E  FT+ALV VV++ A A A   N+Y G+AI  T++ GA       GA  NPAV+ G
Sbjct:    7 VEFIGTFFLVLTIGCTGMAAA--PGVIAPLAIGSVLMVMIYAGGHISGAHYNPAVTLGVYLRGRFPAADVLPYWGAQLLGAVVAAWIV-GLALKGAPVSPFVAP-VLGAF-LAEFLFTFALVYVVLNVATADATDGNSYFGLAIGFTVLAGAFAVGQVSGAAFNPAVAIG 171          
BLAST of EWM29997.1 vs. NCBI_GenBank
Match: gi|1072229655|gb|OEU14389.1| (aquaporin-like protein [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 87.0409 bits (214), Expect = 3.174e-15
Identity = 59/177 (33.33%), Postives = 92/177 (51.98%), Query Frame = 0
Query:  118 EALGTLTLTLVVGLLSRPAAGVDSLT--AAIGVAAVLLAMINTGAPISGAHYNPAVTFALLLIGRVSPFRALVYIASQTVGAIGGAYLARGLAASDQLADPFLPEG---VTGELALVEISFTYALVMVVIHTAFARAQQPNAYAGVAICATLVTGAS-----LGAVMNPAVSAGLYV 284
            E  G L +TL V L +R   G D+    A I + A++ AM+ +   +SGAH+NP+VT A+ + G++S    + Y A Q  GA+ GA +A  +    Q    F  +     TG+  L+E  +TYAL   V++TA   +   N + G+AI   L+ G +      GA +NPA +   +V
Sbjct:   40 EFFGALIITLTVALTNRSDDGFDATNQMAPIAIGAMVTAMLYSYGHVSGAHFNPSVTMAVFIRGKISLLTLIPYFAFQVAGAVAGATIAARVVGGVQYLPAFELDHDAVSTGDAFLLEFLYTYALCTTVLNTATTASLHGNQFYGIAIGFVLIAGITSIGPVTGAALNPAFATAFHV 216          
BLAST of EWM29997.1 vs. NCBI_GenBank
Match: gi|1084010476|gb|OGK18027.1| (hypothetical protein A2779_04755 [Candidatus Roizmanbacteria bacterium RIFCSPHIGHO2_01_FULL_40_98] >gi|1084020498|gb|OGK27406.1| hypothetical protein A3C31_05080 [Candidatus Roizmanbacteria bacterium RIFCSPHIGHO2_02_FULL_40_53] >gi|1084024011|gb|OGK30745.1| hypothetical protein A2W49_01960 [Candidatus Roizmanbacteria bacterium RIFCSPHIGHO2_12_41_18] >gi|1084030122|gb|OGK36494.1| hypothetical protein A3E69_02705 [Candidatus Roizmanbacteria bacterium RIFCSPHIGHO2_12_FULL_40_130] >gi|1084044958|gb|OGK50616.1| hypothetical protein A3B50_02435 [Candidatus Roizmanbacteria bacterium RIFCSPLOWO2_01_FULL_40_42] >gi|1084053655|gb|OGK58787.1| hypothetical protein A3H84_02195 [Candidatus Roizmanbacteria bacterium RIFCSPLOWO2_02_FULL_40_13] >gi|1084056098|gb|OGK61106.1| hypothetical protein A3G67_04395 [Candidatus Roizmanbacteria bacterium RIFCSPLOWO2_12_FULL_40_12])

HSP 1 Score: 83.5741 bits (205), Expect = 6.396e-15
Identity = 64/171 (37.43%), Postives = 89/171 (52.05%), Query Frame = 0
Query:  116 MTEALGTLTLTLVVGLLSRPAAGVDSLTAAIGVAAVLLAMINTGAPISGAHYNPAVTFALLLIGRVSPFRALVYIASQTVGAIGGAYLARGLAASDQLADPFLPEGVTGELALVEISFTYALVMVVIHTAFARAQQPNAYAGVAICATLVTGASLGAVM-----NPAVSAG 281
            + E +GT  L LV+ L   P A        IGVA  L+A++  G  ISG HYNPAVT A+L+  ++      VYI SQ +GAI  +     L  +  +  P L    +  L L E+ FT+ALV VV++ A +    PN + G+AI  T++ GA  G  +     NPAV  G
Sbjct:    5 LVEMIGTFFLVLVIALTGNPLA--------IGVA--LMALVYAGGHISGGHYNPAVTLAVLMQKKIRQKEVGVYIFSQLIGAILASLAVIYLKGTPLVVSPALTTTYSQAL-LTEVLFTFALVTVVLNVAVSEKNTPNDFYGLAIGFTVMAGAFAGGAISGGAYNPAVGVG 164          
The following BLAST results are available for this feature:
BLAST of EWM29997.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585112607|gb|EWM29997.1|0.000e+0100.00major intrinsic protein [Nannochloropsis gaditana][more]
gi|553185707|ref|XP_005854294.1|0.000e+0100.00major intrinsic protein, partial [Nannochloropsis ... [more]
gi|585109838|gb|EWM27571.1|2.090e-2037.36major intrinsic protein [Nannochloropsis gaditana][more]
gi|821340966|gb|AKH32540.1|6.471e-1637.43Glycerol uptake facilitator protein [candidate div... [more]
gi|1071447193|ref|WP_069871961.1|1.416e-1537.71porin [Streptomyces sp. SPMA113][more]
gi|1052422201|emb|SCF68560.1|1.472e-1537.71aquaporin Z [Streptomyces sp. MnatMP-M27][more]
gi|584454748|emb|CDM59652.1|1.813e-1540.00Glycerol uptake facilitator or related permease [R... [more]
gi|739206727|ref|WP_037070115.1|2.160e-1540.00porin [Rhizobium favelukesii][more]
gi|1072229655|gb|OEU14389.1|3.174e-1533.33aquaporin-like protein [Fragilariopsis cylindrus C... [more]
gi|1084010476|gb|OGK18027.1|6.396e-1537.43hypothetical protein A2779_04755 [Candidatus Roizm... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna674rna674Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications