EWM29997.1, cds674 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM29997.1 vs. NCBI_GenBank
Match: gi|585112607|gb|EWM29997.1| (major intrinsic protein [Nannochloropsis gaditana]) HSP 1 Score: 996.497 bits (2575), Expect = 0.000e+0 Identity = 496/496 (100.00%), Postives = 496/496 (100.00%), Query Frame = 0 Query: 1 MLSLVRDPASGGVVDIIMPRTSSAPHQVEDESKQPLMPAQDNKVKDNVIESQAMSEEETASAGHSNAERNKSHLSEEHGDKKVSEGHRKHRRYLTAGAQCCSQTFTILQNLLAVPMTEALGTLTLTLVVGLLSRPAAGVDSLTAAIGVAAVLLAMINTGAPISGAHYNPAVTFALLLIGRVSPFRALVYIASQTVGAIGGAYLARGLAASDQLADPFLPEGVTGELALVEISFTYALVMVVIHTAFARAQQPNAYAGVAICATLVTGASLGAVMNPAVSAGLYVAARHKDEGEGGGAGGGGGGAVGPLDVANGRRFNRGLCILRGQCSRSLVPVWKGVGRSTQEETLPGRESAEGRRERGPRSPSSRGDLLPALSGYLPTCLCADTSPGIMPCQGLCDGVPGSFPPHPSSRPQQQLLHPSLPPYLGRFQRSFIGRPCLCRGLRQRRPLQPSRYPRGFSFPASEEKNSPGPGLRNGATPRRSVRGGAGSVRARSRPL 496 MLSLVRDPASGGVVDIIMPRTSSAPHQVEDESKQPLMPAQDNKVKDNVIESQAMSEEETASAGHSNAERNKSHLSEEHGDKKVSEGHRKHRRYLTAGAQCCSQTFTILQNLLAVPMTEALGTLTLTLVVGLLSRPAAGVDSLTAAIGVAAVLLAMINTGAPISGAHYNPAVTFALLLIGRVSPFRALVYIASQTVGAIGGAYLARGLAASDQLADPFLPEGVTGELALVEISFTYALVMVVIHTAFARAQQPNAYAGVAICATLVTGASLGAVMNPAVSAGLYVAARHKDEGEGGGAGGGGGGAVGPLDVANGRRFNRGLCILRGQCSRSLVPVWKGVGRSTQEETLPGRESAEGRRERGPRSPSSRGDLLPALSGYLPTCLCADTSPGIMPCQGLCDGVPGSFPPHPSSRPQQQLLHPSLPPYLGRFQRSFIGRPCLCRGLRQRRPLQPSRYPRGFSFPASEEKNSPGPGLRNGATPRRSVRGGAGSVRARSRPL Sbjct: 1 MLSLVRDPASGGVVDIIMPRTSSAPHQVEDESKQPLMPAQDNKVKDNVIESQAMSEEETASAGHSNAERNKSHLSEEHGDKKVSEGHRKHRRYLTAGAQCCSQTFTILQNLLAVPMTEALGTLTLTLVVGLLSRPAAGVDSLTAAIGVAAVLLAMINTGAPISGAHYNPAVTFALLLIGRVSPFRALVYIASQTVGAIGGAYLARGLAASDQLADPFLPEGVTGELALVEISFTYALVMVVIHTAFARAQQPNAYAGVAICATLVTGASLGAVMNPAVSAGLYVAARHKDEGEGGGAGGGGGGAVGPLDVANGRRFNRGLCILRGQCSRSLVPVWKGVGRSTQEETLPGRESAEGRRERGPRSPSSRGDLLPALSGYLPTCLCADTSPGIMPCQGLCDGVPGSFPPHPSSRPQQQLLHPSLPPYLGRFQRSFIGRPCLCRGLRQRRPLQPSRYPRGFSFPASEEKNSPGPGLRNGATPRRSVRGGAGSVRARSRPL 496
BLAST of EWM29997.1 vs. NCBI_GenBank
Match: gi|553185707|ref|XP_005854294.1| (major intrinsic protein, partial [Nannochloropsis gaditana CCMP526] >gi|422294765|gb|EKU22065.1| major intrinsic protein, partial [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 552.747 bits (1423), Expect = 0.000e+0 Identity = 276/276 (100.00%), Postives = 276/276 (100.00%), Query Frame = 0 Query: 6 RDPASGGVVDIIMPRTSSAPHQVEDESKQPLMPAQDNKVKDNVIESQAMSEEETASAGHSNAERNKSHLSEEHGDKKVSEGHRKHRRYLTAGAQCCSQTFTILQNLLAVPMTEALGTLTLTLVVGLLSRPAAGVDSLTAAIGVAAVLLAMINTGAPISGAHYNPAVTFALLLIGRVSPFRALVYIASQTVGAIGGAYLARGLAASDQLADPFLPEGVTGELALVEISFTYALVMVVIHTAFARAQQPNAYAGVAICATLVTGASLGAVMNPAVSAG 281 RDPASGGVVDIIMPRTSSAPHQVEDESKQPLMPAQDNKVKDNVIESQAMSEEETASAGHSNAERNKSHLSEEHGDKKVSEGHRKHRRYLTAGAQCCSQTFTILQNLLAVPMTEALGTLTLTLVVGLLSRPAAGVDSLTAAIGVAAVLLAMINTGAPISGAHYNPAVTFALLLIGRVSPFRALVYIASQTVGAIGGAYLARGLAASDQLADPFLPEGVTGELALVEISFTYALVMVVIHTAFARAQQPNAYAGVAICATLVTGASLGAVMNPAVSAG Sbjct: 1 RDPASGGVVDIIMPRTSSAPHQVEDESKQPLMPAQDNKVKDNVIESQAMSEEETASAGHSNAERNKSHLSEEHGDKKVSEGHRKHRRYLTAGAQCCSQTFTILQNLLAVPMTEALGTLTLTLVVGLLSRPAAGVDSLTAAIGVAAVLLAMINTGAPISGAHYNPAVTFALLLIGRVSPFRALVYIASQTVGAIGGAYLARGLAASDQLADPFLPEGVTGELALVEISFTYALVMVVIHTAFARAQQPNAYAGVAICATLVTGASLGAVMNPAVSAG 276
BLAST of EWM29997.1 vs. NCBI_GenBank
Match: gi|585109838|gb|EWM27571.1| (major intrinsic protein [Nannochloropsis gaditana]) HSP 1 Score: 104.375 bits (259), Expect = 2.090e-20 Identity = 68/182 (37.36%), Postives = 106/182 (58.24%), Query Frame = 0 Query: 116 MTEALGTLTLTLVVGLLSRPAAGVDSLTAAIGVAAVLLAMINTGAPISGAHYNPAVTFALLLIGRVSPFRALVYIASQTVGAIGGAYLARGLAASDQLADPFLPEGV-----TGELALV--EISFTYALVMVVIHTAFARAQQPNAYAGVAICATLVTGASLGAVMNPAVSAGLYVAARHKD 290 + E LGT +T+ GLL + A + A+GVAAVL+ +I+ GA +SGA+YNP+++ ALLL+G++ P + L YI+ Q VGA+ G L + L LP+G G +A E F++AL++ + T +++Q N++ G AI + G + GA MNPAV+ GL+ A H+ Sbjct: 70 IMETLGTTIITVTAGLLGK--ADMSPGLKALGVAAVLMPLIHAGARVSGANYNPSISVALLLLGKMPPAQCLFYISCQLVGALIGGVLTKVL----------LPQGAMDPSSVGTIATCVPEALFSFALILTALQTTVSKSQSRNSFFGSAISIVVFLGVAFGAGMNPAVAGGLFAGAGHQK 239
BLAST of EWM29997.1 vs. NCBI_GenBank
Match: gi|821340966|gb|AKH32540.1| (Glycerol uptake facilitator protein [candidate division SR1 bacterium Aalborg_AAW-1]) HSP 1 Score: 86.6557 bits (213), Expect = 6.471e-16 Identity = 64/171 (37.43%), Postives = 92/171 (53.80%), Query Frame = 0 Query: 116 MTEALGTLTLTLVVGLLSRPAAGVDSLTAAIGVAAVLLAMINTGAPISGAHYNPAVTFALLLIGRVSPFRALVYIASQTVGAIGGAYLARGLAASDQLADPFLPEGVTGELALVEISFTYALVMVVIHTAFARAQQPNAYAGVAI-----CATLVTGASLGAVMNPAVSAG 281 +TEALGT L LV+GL+ A S A + + VL+ M+ G ISGAHYNPAVT L L ++S +A YI +Q +GA A+++ L + + P + + E+ FT+ALV VV++ A +A + N+Y G+AI A G G NPAV+ G Sbjct: 5 VTEALGTFFLVLVIGLVVAQA----SEFAPLAIGTVLMVMVYAGGHISGAHYNPAVTVGLALSDKISWNKAGGYILAQLIGAFLAAWVSYMLVGQALVVE---PTAASRTSIVAELIFTFALVYVVLNVAATKATEGNSYYGLAIGFTVMAAAFAVGGISGGAFNPAVAFG 168
BLAST of EWM29997.1 vs. NCBI_GenBank
Match: gi|1071447193|ref|WP_069871961.1| (porin [Streptomyces sp. SPMA113]) HSP 1 Score: 86.2705 bits (212), Expect = 1.416e-15 Identity = 66/175 (37.71%), Postives = 95/175 (54.29%), Query Frame = 0 Query: 116 MTEALGTLTLTLVVGLLSRPAAGVDSLTAA----IGVAAVLLAMINTGAPISGAHYNPAVTFALLLIGRVSPFRALVYIASQTVGAIGGAYLARGLAASDQLADPFLPEGVTGELALVEISFTYALVMVVIHTAFARAQQPNAYAGVAICATLVTGASL-----GAVMNPAVSAG 281 + E +GTL L L + AA V LT A + + VL+ M+ G +SGAHYNPAVT A+LL GR++ A Y+ +Q VG GA +AR + D++ L G LVE+ FT+AL VV++ A + + N++ G+AI T++ GA G NPAV+ G Sbjct: 5 VAEFIGTLFLVLTI------AAAV--LTKAPLAPLAIGGVLMVMVYAGGHVSGAHYNPAVTLAVLLRGRITAADAATYVVAQFVGGAVGALIARWVVDPDKVTALSLSGRQLGAALLVEVLFTFALAYVVLNVATSSSHPDNSFYGLAIGFTVLAGAIAVGGISGGAFNPAVAVG 171
BLAST of EWM29997.1 vs. NCBI_GenBank
Match: gi|1052422201|emb|SCF68560.1| (aquaporin Z [Streptomyces sp. MnatMP-M27]) HSP 1 Score: 86.2705 bits (212), Expect = 1.472e-15 Identity = 66/175 (37.71%), Postives = 95/175 (54.29%), Query Frame = 0 Query: 116 MTEALGTLTLTLVVGLLSRPAAGVDSLTAA----IGVAAVLLAMINTGAPISGAHYNPAVTFALLLIGRVSPFRALVYIASQTVGAIGGAYLARGLAASDQLADPFLPEGVTGELALVEISFTYALVMVVIHTAFARAQQPNAYAGVAICATLVTGASL-----GAVMNPAVSAG 281 + E +GTL L L + AA V LT A + + VL+ M+ G +SGAHYNPAVT A+LL GR++ A Y+ +Q VG GA +AR + D++ L G LVE+ FT+AL VV++ A + + N++ G+AI T++ GA G NPAV+ G Sbjct: 5 VAEFIGTLFLVLTI------AAAV--LTKAPLAPLAIGGVLMVMVYAGGHVSGAHYNPAVTLAVLLRGRITATDAATYVVAQFVGGAVGALIARWVVDPDKVTALSLAGRQLGAALLVEVLFTFALAYVVLNVATSSSHPDNSFYGLAIGFTVLAGAIAVGGISGGAFNPAVAVG 171
BLAST of EWM29997.1 vs. NCBI_GenBank
Match: gi|584454748|emb|CDM59652.1| (Glycerol uptake facilitator or related permease [Rhizobium favelukesii]) HSP 1 Score: 85.5001 bits (210), Expect = 1.813e-15 Identity = 68/170 (40.00%), Postives = 90/170 (52.94%), Query Frame = 0 Query: 117 TEALGTLTLTLVVGLLSRPAAGVDSLTAAIGVAAVLLAMINTGAPISGAHYNPAVTFALLLIGRVSPFRALVYIASQTVGAIGGAYLARGLAASDQLADPFLPEGVTGELALVEISFTYALVMVVIHTAFARAQQPNAYAGVAICATLVTGASL-----GAVMNPAVSAG 281 E +GT L L +G AA + A + + +VL+ MI G ISGAHYNPAVT + L GR L Y +Q +GA+ A++ GLA PF+ V G L E FT+ALV VV++ A A A N+Y G+AI T++ GA GA NPAV+ G Sbjct: 6 VEFIGTFFLVLTIGCTGMAAA--PGVIAPLAIGSVLMVMIYAGGHISGAHYNPAVTLGVYLRGRFPAADVLPYWGAQLLGAVVAAWIV-GLALKGAPVSPFVAP-VLGAF-LAEFLFTFALVYVVLNVATADATDGNSYFGLAIGFTVLAGAFAVGQVSGAAFNPAVAIG 170
BLAST of EWM29997.1 vs. NCBI_GenBank
Match: gi|739206727|ref|WP_037070115.1| (porin [Rhizobium favelukesii]) HSP 1 Score: 85.1149 bits (209), Expect = 2.160e-15 Identity = 68/170 (40.00%), Postives = 90/170 (52.94%), Query Frame = 0 Query: 117 TEALGTLTLTLVVGLLSRPAAGVDSLTAAIGVAAVLLAMINTGAPISGAHYNPAVTFALLLIGRVSPFRALVYIASQTVGAIGGAYLARGLAASDQLADPFLPEGVTGELALVEISFTYALVMVVIHTAFARAQQPNAYAGVAICATLVTGASL-----GAVMNPAVSAG 281 E +GT L L +G AA + A + + +VL+ MI G ISGAHYNPAVT + L GR L Y +Q +GA+ A++ GLA PF+ V G L E FT+ALV VV++ A A A N+Y G+AI T++ GA GA NPAV+ G Sbjct: 7 VEFIGTFFLVLTIGCTGMAAA--PGVIAPLAIGSVLMVMIYAGGHISGAHYNPAVTLGVYLRGRFPAADVLPYWGAQLLGAVVAAWIV-GLALKGAPVSPFVAP-VLGAF-LAEFLFTFALVYVVLNVATADATDGNSYFGLAIGFTVLAGAFAVGQVSGAAFNPAVAIG 171
BLAST of EWM29997.1 vs. NCBI_GenBank
Match: gi|1072229655|gb|OEU14389.1| (aquaporin-like protein [Fragilariopsis cylindrus CCMP1102]) HSP 1 Score: 87.0409 bits (214), Expect = 3.174e-15 Identity = 59/177 (33.33%), Postives = 92/177 (51.98%), Query Frame = 0 Query: 118 EALGTLTLTLVVGLLSRPAAGVDSLT--AAIGVAAVLLAMINTGAPISGAHYNPAVTFALLLIGRVSPFRALVYIASQTVGAIGGAYLARGLAASDQLADPFLPEG---VTGELALVEISFTYALVMVVIHTAFARAQQPNAYAGVAICATLVTGAS-----LGAVMNPAVSAGLYV 284 E G L +TL V L +R G D+ A I + A++ AM+ + +SGAH+NP+VT A+ + G++S + Y A Q GA+ GA +A + Q F + TG+ L+E +TYAL V++TA + N + G+AI L+ G + GA +NPA + +V Sbjct: 40 EFFGALIITLTVALTNRSDDGFDATNQMAPIAIGAMVTAMLYSYGHVSGAHFNPSVTMAVFIRGKISLLTLIPYFAFQVAGAVAGATIAARVVGGVQYLPAFELDHDAVSTGDAFLLEFLYTYALCTTVLNTATTASLHGNQFYGIAIGFVLIAGITSIGPVTGAALNPAFATAFHV 216
BLAST of EWM29997.1 vs. NCBI_GenBank
Match: gi|1084010476|gb|OGK18027.1| (hypothetical protein A2779_04755 [Candidatus Roizmanbacteria bacterium RIFCSPHIGHO2_01_FULL_40_98] >gi|1084020498|gb|OGK27406.1| hypothetical protein A3C31_05080 [Candidatus Roizmanbacteria bacterium RIFCSPHIGHO2_02_FULL_40_53] >gi|1084024011|gb|OGK30745.1| hypothetical protein A2W49_01960 [Candidatus Roizmanbacteria bacterium RIFCSPHIGHO2_12_41_18] >gi|1084030122|gb|OGK36494.1| hypothetical protein A3E69_02705 [Candidatus Roizmanbacteria bacterium RIFCSPHIGHO2_12_FULL_40_130] >gi|1084044958|gb|OGK50616.1| hypothetical protein A3B50_02435 [Candidatus Roizmanbacteria bacterium RIFCSPLOWO2_01_FULL_40_42] >gi|1084053655|gb|OGK58787.1| hypothetical protein A3H84_02195 [Candidatus Roizmanbacteria bacterium RIFCSPLOWO2_02_FULL_40_13] >gi|1084056098|gb|OGK61106.1| hypothetical protein A3G67_04395 [Candidatus Roizmanbacteria bacterium RIFCSPLOWO2_12_FULL_40_12]) HSP 1 Score: 83.5741 bits (205), Expect = 6.396e-15 Identity = 64/171 (37.43%), Postives = 89/171 (52.05%), Query Frame = 0 Query: 116 MTEALGTLTLTLVVGLLSRPAAGVDSLTAAIGVAAVLLAMINTGAPISGAHYNPAVTFALLLIGRVSPFRALVYIASQTVGAIGGAYLARGLAASDQLADPFLPEGVTGELALVEISFTYALVMVVIHTAFARAQQPNAYAGVAICATLVTGASLGAVM-----NPAVSAG 281 + E +GT L LV+ L P A IGVA L+A++ G ISG HYNPAVT A+L+ ++ VYI SQ +GAI + L + + P L + L L E+ FT+ALV VV++ A + PN + G+AI T++ GA G + NPAV G Sbjct: 5 LVEMIGTFFLVLVIALTGNPLA--------IGVA--LMALVYAGGHISGGHYNPAVTLAVLMQKKIRQKEVGVYIFSQLIGAILASLAVIYLKGTPLVVSPALTTTYSQAL-LTEVLFTFALVTVVLNVAVSEKNTPNDFYGLAIGFTVMAGAFAGGAISGGAYNPAVGVG 164 The following BLAST results are available for this feature:
BLAST of EWM29997.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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