rna6727, rna6727 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna6727
Unique Name	rna6727
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	3015
Alignment location	CM002469.1:357022..358302 +

Link to JBrowse

Properties


Property Name	Value
Product	ribosomal protein l14
Orig transcript id	gnl\|cribi\|Naga_100027g34.142.mrna
Orig protein id	gnl\|cribi\|Naga_100027g34.142
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002469.1	supercontig	CM002469.1:357022..358302 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100027g34	gene6504	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna6727	rna6727-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM23964.1	cds6711	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002469.1:357022..358302+
coding sequence from alignment at CM002469.1:357022..358302+

mRNA sequence

>rna6727 ID=rna6727|Name=rna6727|organism=Nannochloropsis gaditana|type=mRNA|length=3015bp
GGCCTTTGCGGGCACGTGCAACCCCTGATTATGCGCACACGTGTGTATCT
ACAGTTAAGGCATATTTTAGAACACTCTGCGCTACCCGCGGACTCCACTT
CGTCGTGACTTAGAGCTGCATTATGCTCCAAGGCAATGGACTCTCGCAAC
GTTGCAGACTTGCGATGGCTAGCCCGCCTATTCCCCTCCGCATTATCTTC
AATAGATGAAAATCAAGAGAAACGCGAGGTACTTTGTCTGATTACCTTGC
TGCAATCGGCGGATCCGCTCGTGGGCCACACGGCGACGTCCCTGCTTGTG
GAGGCCCTGCGGCAGGCCAAGTCCGGTTCCTCCAAAGCTCTGGTGCTTGA
TGCCTTATGGCATCTCCCGGACCAGGATCGCTGGGCGGCTTTGGAGCGAA
AGCGACTCACAAATCTTCTGGAAGCATATCGGCGTATTGTAGAAGAGGTA
TGCTGTGGACACGGGGATCGGGAACAAGGGCTGGAGGCGCCGAACGAAAG
AAAAGCGACCGCTACTTGCCGTAAGGATAAGGCAACGGGAGACTACGTGC
GCCGCGTTGTAACGCAGGCGTTGCCCACCTTGCATGAAGCAGCTGTGCAG
TCCTTTGCAGCGTCTGTCACACAAGATGGTGGTTTGCGCGATGAAGCGGA
GTTGCCTTTAGTCTGGGTTTCAAGGCTAGGCTCGACGCTGCTGCAGAGCT
ACGAGACGGAGGGGAATACGGGGTACAACGACAACCACGCCGTCCAAGAG
CCTTTCACGAATAGAAAAAGCACATATGAAGTGGAGAAACGTCAACTGAA
CAAGTTATTGGCGTCGTTATGCCAAAGGTGTTGGCTGGCAACAGAGGGCG
TTGCGTACGCCCTGGAATCGCGTCGACACCTGCTAGAGCTCGCGCTCTTG
CTCCTGCACAGTGTAAGTGCATCTGGAGCAGAGAACGTTGATGCTCTTAA
AGAGGAATGTCAGACTGTTGAGTATTTGATAGGCTTGTGTGATGCACATT
GGCATGACATCGAGGTGAGTGAGTGCGACAAGCAGGAAGCGAAAGAGGGG
AAGCCCCCTGCATGCTCATTGGTCCGTCCCGTGCGACCTAGCGATTTGTT
TGTAAGCAGCATGGCCCTCTGGACCGGATGTGTGAAGCACATTGTCTTGG
GGCGAAAGAGGTGCAATGGCTCACTGCCAGAATGGGAGGCTCTCTCCTTG
CGTCTGCTTGGCAGCCCTTTCTGCCGAAGCCATGTGTTCGCACTCACCCA
GGAGGGACAGAGACGGGTGCTAGTGAGCTGTCTAGCTGAGTACGACGACA
AACTCATGAGTGTACTGCGTGACATGCTGCTCGTGCACTGGAGCCTCTCC
ATCCTCCGAGAGGCCCCGTCAGAGGGGAAGAGGTTAGTGGGTTCGTTTCT
GGCTGCCTCCGAGCCCATTGCCCTCCTGCACACCCTCCTCGATCGCCTGC
CCAATGAGAGCGCGGAACAGCTTTTTTTGGAATTCTTCCTGTCTGACGAG
ACCTGCGCTCTAGAGTATTTGTTGAGTCTGGCCAAATTTATGATTTGGCA
GCAGCAGGAGCGCAGGGAGGCATGGAGACATGGGGAATCTAGTCCCTTAA
AGAAGAGTGGAGTTCCTCACAAGTCTCCGGAAGCAACGGTGAGAGCGTTT
TTGCAGCGACTGAGACAGCGGCTGGAGGACTGGGCCGCGAAACGCCTCTT
TCCCTTTGACCCGGCCGTCCTTGTGGCAAGGTTGCGGCGACTTGAGCATT
CTTAGTTCTTTTTTCCGGTGCAACGAAGCACAACGCCCACATGAAACTAT
ACATATAAAGAAACGACGCAGGCGTAGAACTTGACACCATCCAATATAAT
TGATTTGGTGTATTTACCGCCGTACATATGGAATACATCGTGTGCAGAAC
GCAAGAATCTACCTATTTCTGAGCCTCTCCAATAGCCTGCGTTGTAGGGC
CACCGACAGAAGCACTACTCCGGGCCCGAGGATCATCCCCATGAAGAGAT
CTGCCAGGTCAACCCGACGAAGGCGTTGCCACAGGGACGGGACGGGTAGT
GACCGAAGAGGCGGGGGAGGAAGGCCGTAAGGCTGGTCGCTCTCAGAGAT
GAAGGTGTAGTGGGCCTGGGCGACTAAAGGAACGAAAGTCGCCTCCAAAT
CTGGTTGAGCTGGATCTCGCACTACTTTCCGCACTTCAAAGCAGGTCGAA
ATCGGGGTGGAGGGCTCTGTGGCCTCGGCGCTTTCTCTCCCCTGCCGGGC
CCGCGGCGAGGCCTTTACAAGCTGCACCTCTCTGTAGCGGGTGTGCAAAA
GGTTGGCCACCACCATATGCACGCCGTACCGCGCCACCGCCCCCTGCGCT
TTTTCCAAGAGCACGTCTGTGTCCGTTTCCAGCTTGAAGGACACGACAAA
TGCGTGCGGGGCCCACTCTCGCCGGAGAAGAGAAAGACACTTAGGCACAG
CGCGCAGGTTCAGCGTCAGTCCATCCCACTCCTCAGCCTTCCCCTTCACA
TCTGCTTGCTTCCTCTGCCGGTGCTTCCCGGTGGACTGGATCTTGTGGTC
GGCCATCTCGGAAGCCGGAACGTAGAAGTCACTCACCGCACAGGCCAAAA
AGAACAGGGCATTCTGTCTAAAGGGAGCAAGGCAGCGAGCGGCAGATTGT
AGGATGAGAAGATAGTCTGTCACTGTCTCGTAAGAAACCTGCAGCAGCGT
ACCCTCCTCTCGCGCCTCTTGATACGCCTCAAGCGCCGCGCACAAGGAGG
CGGCCGCTCCTCCTTTGGCGTTCAGAACCAAGGCCCCGGTTTTCTCTCTC
ACGCGCAAGGCATCCATCAGAGCTCCGTCTACGTGCTCCGCGACCTCCGT
CTGGAACGTCCTGGAGAAAGGACAAGATGTCCCTGGACGATGCAAAAAAA
TGACTGCATAGCCCAGTCGCAGGAAGTATTCCGCCGAAGCCGCCCCGCGC
TTGCCTGTGCTGAAATTTTCTATGGATCGCACAGTATTGCGCTCCAAAGG
CGCAGCGGTGCCTCC

protein sequence of rna6727

>rna6727-protein ID=rna6727-protein|Name=rna6727|organism=Nannochloropsis gaditana|type=polypeptide|length=192bp
MLTLQLSATALWRLGVSSAIRIPASSSQPLCCLRVLACPPSCPLYTTTSH
RYSYSFSEASVKMVKLFTRFVEIGRVVLVNYGPDYGKLATIIDVVDGNKI
LVDGPDSGVLRQVIPLKRVSLTDLKVKIPRNAREKTLKKAWATEKIVARW
EQTTWCKKLVAKAKRAALTDFDRFKLMVARKEKSAIIKKHVK

mRNA from alignment at CM002469.1:357022..358302+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna6727 ID=rna6727|Name=rna6727|organism=Nannochloropsis gaditana|type=mRNA|length=1281bp|location=Sequence derived from alignment at CM002469.1:357022..358302+ (Nannochloropsis gaditana)
TTTCCCTGCTTATACCCAACCCTTCGTGGTACTCAACTGCTACCTACGAC
GAAAATAAAGTTCTTGGTAGCGCATGGGATGCTGACCCTGCAGTTGAGTG
CGACGGCTCTGTGGCGACTCGGTGTGTCCTCCGCCATCAGAATCCCGGCT
TCGTCGTCGCAGCCGCTTTGTTGTCTCCGTGTCCTCGCTTGTCCTCCGTC
ATGCCCACTCTATACGACCACCTCGCACAGGTACTCTTATAGTTTTTCTG
AGGCCTCAGTCAAGATGGTTAAGGTAAGAGAGTCAGAGAAATGCTTCCAG
GAAGGAGACTCGTCTAAGAAGAGAAGACATGCTCTCGTTGAAAGGAGTCT
GTGTTGGAAGGGGTAGAAGGCTGTACCATTGTAACAAGACAAGGTTTTTA
AGAAATTTTCCTACCCATTACACAATATAGTTATTCACACGCTTTGTAGA
GATCGGTCGGGTGGTGCTGGTAAATTATGGTCCTGACTACGGGAAGCTAG
CGACAATCATCGACGTTGTGGACGGCAACAAGGTGAGCGCTGCCTTCTCG
TCTATTGGATGTCAGAAGATGGGGTCTTGTGAATTTTCTCTTTTCTGTGT
GTGACGTCTTCTTGATGTTGCGGTTGAGATAAAATCCGCTCCATGACGGA
CCGGGGTGTGAAGGGGAGGCTAGCAGGGACCTCGGGTGTCCAAGCGGGAA
GCTAGTAGCAGCGGTGACCAGGCAAAGAAGTGGTCAATTATTTTAATGAG
ATGTATTCTCAAATTCACATGTAACCATTATAATCACTCGACCATTAGAT
ATTGGTGGATGGGCCGGACTCTGGTGTTTTGCGGCAAGTCATTCCTCTGA
AGCGGGTGTCTCTGACTGATTTGAAGGTGAAGATTCCGCGAAACGCCCGC
GAGAAGACCCTAAAGAAAGCCTGGGCAACGGAGAAGATTGTAGCACGGTG
GGAGCAAACCACGTGGTGCAAGAAACTTGTGGCAAAGGCGAAGCGCGCTG
CCCTCACGGACTTCGACCGTTTCAAACTGATGGTAGCTCGCAAGGAGAAA
TCTGCTATCATCAAGAAACACGTGAAGTAAAATCGAAAGCATTGTAGTGG
AAAGCGGATTAATGGAGGCACGTCGGAGGAGGCACTACAGCTGCTAAGCT
TGGGGTTCAGAGGCTCTGAAAGGGACTGACCGCTACCGTCTCGCCGTTCT
CGGAGCCAGGAGTTTCGAATAGGGGCTGTccgggggagagaagggccaaa
agaaaaagcaaccCTTTTGCACAAAAAATTG

Coding sequence (CDS) from alignment at CM002469.1:357022..358302+

>rna6727 ID=rna6727|Name=rna6727|organism=Nannochloropsis gaditana|type=CDS|length=1737bp|location=Sequence derived from alignment at CM002469.1:357022..358302+ (Nannochloropsis gaditana)
ATGCTGACCCTGCAGTTGAGTGCGACGGCTCTGTGGCGACTCGGTGTGTC
CTCCGCCATCAGAATCCCGGCTTCGTCGTCGCAGCCGCTTTGTTGTCTCC
GTGTCCTCGCTTGTCCTCCGTCATGCCCACTCTATACGACCACCTCGCAC
AGGTACTCTTATAGTTTTTCTGAGGCCTCAGTCAAGATGGTTAAGTTATT
CACACGCTTTGTAGAGATCGGTCGGGTGGTGCTGGTAAATTATGGTCCTG
ACTACGGGAAGCTAGCGACAATCATCGACGTTGTGGACGGCAACAAGATA
TTGGTGGATGGGCCGGACTCTGGTGTTTTGCGGCAAGTCATTCCTCTGAA
GCGGGTGTCTCTGACTGATTTGAAGGTGAAGATTCCGCGAAACGCCCGCG
AGAAGACCCTAAAGAAAGCCTGGGCAACGGAGAAGATTGTAGCACGGTGG
GAGCAAACCACGTGGTGCAAGAAACTTGTGGCAAAGGCGAAGCGCGCTGC
CCTCACGGACTTCGACCGTTTCAAACTGATGGTAGCTCGCAAGGAGAAAT
CTGCTATCATCAAGAAACACGTGAAGTAAATGCTGACCCTGCAGTTGAGT
GCGACGGCTCTGTGGCGACTCGGTGTGTCCTCCGCCATCAGAATCCCGGC
TTCGTCGTCGCAGCCGCTTTGTTGTCTCCGTGTCCTCGCTTGTCCTCCGT
CATGCCCACTCTATACGACCACCTCGCACAGGTACTCTTATAGTTTTTCT
GAGGCCTCAGTCAAGATGGTTAAGTTATTCACACGCTTTGTAGAGATCGG
TCGGGTGGTGCTGGTAAATTATGGTCCTGACTACGGGAAGCTAGCGACAA
TCATCGACGTTGTGGACGGCAACAAGATATTGGTGGATGGGCCGGACTCT
GGTGTTTTGCGGCAAGTCATTCCTCTGAAGCGGGTGTCTCTGACTGATTT
GAAGGTGAAGATTCCGCGAAACGCCCGCGAGAAGACCCTAAAGAAAGCCT
GGGCAACGGAGAAGATTGTAGCACGGTGGGAGCAAACCACGTGGTGCAAG
AAACTTGTGGCAAAGGCGAAGCGCGCTGCCCTCACGGACTTCGACCGTTT
CAAACTGATGGTAGCTCGCAAGGAGAAATCTGCTATCATCAAGAAACACG
TGAAGTAAATGCTGACCCTGCAGTTGAGTGCGACGGCTCTGTGGCGACTC
GGTGTGTCCTCCGCCATCAGAATCCCGGCTTCGTCGTCGCAGCCGCTTTG
TTGTCTCCGTGTCCTCGCTTGTCCTCCGTCATGCCCACTCTATACGACCA
CCTCGCACAGGTACTCTTATAGTTTTTCTGAGGCCTCAGTCAAGATGGTT
AAGTTATTCACACGCTTTGTAGAGATCGGTCGGGTGGTGCTGGTAAATTA
TGGTCCTGACTACGGGAAGCTAGCGACAATCATCGACGTTGTGGACGGCA
ACAAGATATTGGTGGATGGGCCGGACTCTGGTGTTTTGCGGCAAGTCATT
CCTCTGAAGCGGGTGTCTCTGACTGATTTGAAGGTGAAGATTCCGCGAAA
CGCCCGCGAGAAGACCCTAAAGAAAGCCTGGGCAACGGAGAAGATTGTAG
CACGGTGGGAGCAAACCACGTGGTGCAAGAAACTTGTGGCAAAGGCGAAG
CGCGCTGCCCTCACGGACTTCGACCGTTTCAAACTGATGGTAGCTCGCAA
GGAGAAATCTGCTATCATCAAGAAACACGTGAAGTAA

Synonyms

Publications