EWM23964.1, cds6711 (CDS) Nannochloropsis gaditana

Overview
NameEWM23964.1
Unique Namecds6711
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002469.1:357100..357294 +
Alignment locationCM002469.1:357452..357553 +
Alignment locationCM002469.1:357820..358101 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM23964.1
Productribosomal protein l14
Orig transcript idgnl|cribi|Naga_100027g34.142.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002469.1supercontigCM002469.1:357100..357294 +
CM002469.1supercontigCM002469.1:357452..357553 +
CM002469.1supercontigCM002469.1:357820..358101 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0005829cytosol
GO:0005840ribosome
GO:0005622intracellular
Vocabulary: Molecular Function
TermDefinition
GO:0005198structural molecule activity
GO:0003723RNA binding
GO:0003735structural constituent of ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: INTERPRO
TermDefinition
IPR008991Translation_prot_SH3-like
IPR014722Rib_L2_dom2
IPR002784Ribosomal_L14
Homology
BLAST of EWM23964.1 vs. NCBI_GenBank
Match: gi|585105250|gb|EWM23964.1| (ribosomal protein l14 [Nannochloropsis gaditana])

HSP 1 Score: 390.193 bits (1001), Expect = 2.735e-137
Identity = 192/192 (100.00%), Postives = 192/192 (100.00%), Query Frame = 0
Query:    1 MLTLQLSATALWRLGVSSAIRIPASSSQPLCCLRVLACPPSCPLYTTTSHRYSYSFSEASVKMVKLFTRFVEIGRVVLVNYGPDYGKLATIIDVVDGNKILVDGPDSGVLRQVIPLKRVSLTDLKVKIPRNAREKTLKKAWATEKIVARWEQTTWCKKLVAKAKRAALTDFDRFKLMVARKEKSAIIKKHVK 192
            MLTLQLSATALWRLGVSSAIRIPASSSQPLCCLRVLACPPSCPLYTTTSHRYSYSFSEASVKMVKLFTRFVEIGRVVLVNYGPDYGKLATIIDVVDGNKILVDGPDSGVLRQVIPLKRVSLTDLKVKIPRNAREKTLKKAWATEKIVARWEQTTWCKKLVAKAKRAALTDFDRFKLMVARKEKSAIIKKHVK
Sbjct:    1 MLTLQLSATALWRLGVSSAIRIPASSSQPLCCLRVLACPPSCPLYTTTSHRYSYSFSEASVKMVKLFTRFVEIGRVVLVNYGPDYGKLATIIDVVDGNKILVDGPDSGVLRQVIPLKRVSLTDLKVKIPRNAREKTLKKAWATEKIVARWEQTTWCKKLVAKAKRAALTDFDRFKLMVARKEKSAIIKKHVK 192          
BLAST of EWM23964.1 vs. NCBI_GenBank
Match: gi|953487758|emb|CEG48586.1| (60s ribosomal protein [Plasmopara halstedii])

HSP 1 Score: 169.474 bits (428), Expect = 1.605e-50
Identity = 90/146 (61.64%), Postives = 105/146 (71.92%), Query Frame = 0
Query:   57 SEASVKMVKL---------FTRFVEIGRVVLVNYGPDYGKLATIIDVVDGNKILVDGPDS--GVLRQVIPLKRVSLTDLKVKIPRNAREKTLKKAWATEKIVARWEQTTWCKKLVAKAKRAALTDFDRFKLMVARKEKSAIIKKHV 191
              ASV +V+L         FTRFV IGRVVL+NYGPD GK+ATIIDVVD NK LVDGP S  GV R VI  KR+SLTDL V IPR AREKTLKKA A    +A+WE +TW KK+  K  RA L DF+RFK M+ARK+K+++IKK V
Sbjct:   13 GHASVLLVRLAFYLSSAMTFTRFVSIGRVVLINYGPDAGKIATIIDVVDENKALVDGPFSVTGVNRHVINFKRLSLTDLTVDIPRQAREKTLKKALAKADTLAKWEASTWSKKIQNKKTRAELNDFERFKSMIARKQKNSLIKKAV 158          
BLAST of EWM23964.1 vs. NCBI_GenBank
Match: gi|1210516316|dbj|GAX24814.1| (large subunit ribosomal protein L14e [Fistulifera solaris] >gi|1210523260|dbj|GAX17897.1| large subunit ribosomal protein L14e [Fistulifera solaris])

HSP 1 Score: 168.318 bits (425), Expect = 1.676e-50
Identity = 80/126 (63.49%), Postives = 100/126 (79.37%), Query Frame = 0
Query:   67 FTRFVEIGRVVLVNYGPDYGKLATIIDVVDGNKILVDGPDSGVLRQVIPLKRVSLTDLKVKIPRNAREKTLKKAWATEKIVARWEQTTWCKKLVAKAKRAALTDFDRFKLMVARKEKSAIIKKHVK 192
            F RF+E+GR+VL+NYGP+ GKLAT+IDVVD NK L+DGP +G  RQVI   R++LTDL VKI RNAR KTL KAW     +A WE+++W KKL+AK KRA+L DFDRFK+MVARK+K  II+K +K
Sbjct:    3 FQRFMEVGRIVLINYGPEAGKLATVIDVVDQNKCLIDGPQTG--RQVISFTRIALTDLTVKIQRNARPKTLAKAWEEAGTLAAWEKSSWAKKLIAKKKRASLNDFDRFKVMVARKQKREIIEKKMK 126          
BLAST of EWM23964.1 vs. NCBI_GenBank
Match: gi|223995201|ref|XP_002287284.1| (RL14, ribosomal protein 14 60S large ribosomal subunit [Thalassiosira pseudonana CCMP1335] >gi|220976400|gb|EED94727.1| RL14, ribosomal protein 14 60S large ribosomal subunit [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 167.548 bits (423), Expect = 4.216e-50
Identity = 81/128 (63.28%), Postives = 103/128 (80.47%), Query Frame = 0
Query:   67 FTRFVEIGRVVLVNYGPDYGKLATIIDVVDGNKILVDGPD--SGVLRQVIPLKRVSLTDLKVKIPRNAREKTLKKAWATEKIVARWEQTTWCKKLVAKAKRAALTDFDRFKLMVARKEKSAIIKKHVK 192
            F+R+VE+GRVVL+ YGPD GKLAT+IDVVD NK LV GP+  +GV RQVIP +R++LTDL VKI R+AR K LK AWA    +A+WE ++W KKL  K+KRAAL+DFDRFK+MVA+K+KS II + +K
Sbjct:    3 FSRYVEVGRVVLITYGPDAGKLATVIDVVDQNKCLVQGPEEITGVKRQVIPYRRIALTDLTVKIQRSARAKQLKAAWAEGDTLAKWEGSSWAKKLDGKSKRAALSDFDRFKVMVAKKQKSRIIAQKIK 130          
BLAST of EWM23964.1 vs. NCBI_GenBank
Match: gi|676389913|ref|XP_009038235.1| (hypothetical protein AURANDRAFT_28296, partial [Aureococcus anophagefferens] >gi|323451117|gb|EGB06995.1| hypothetical protein AURANDRAFT_28296, partial [Aureococcus anophagefferens])

HSP 1 Score: 167.162 bits (422), Expect = 4.719e-50
Identity = 87/128 (67.97%), Postives = 107/128 (83.59%), Query Frame = 0
Query:   67 FTRFVEIGRVVLVNYGPDYGKLATIIDVVDGNKILVDGP--DSGVLRQVIPLKRVSLTDLKVKIPRNAREKTLKKAWATEKIVARWEQTTWCKKLVAKAKRAALTDFDRFKLMVARKEKSAIIKKHVK 192
            F+RFVE+GRVVL+NYGPD GKLATIID+VDGNK LVDGP   +GV RQVIP KRV+LTD+ VKIP+NAR+KTL KAW    ++A+W+ ++W KKL AK KRA+LTDF RF+LMVARK++SAI+   VK
Sbjct:    1 FSRFVEVGRVVLINYGPDEGKLATIIDIVDGNKCLVDGPATKTGVARQVIPFKRVALTDIVVKIPKNARQKTLNKAWDEADVLAKWDASSWAKKLAAKKKRASLTDFQRFQLMVARKQRSAIVAAKVK 128          
BLAST of EWM23964.1 vs. NCBI_GenBank
Match: gi|219113413|ref|XP_002186290.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|209583140|gb|ACI65760.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 166.777 bits (421), Expect = 8.869e-50
Identity = 79/127 (62.20%), Postives = 101/127 (79.53%), Query Frame = 0
Query:   67 FTRFVEIGRVVLVNYGPDYGKLATIIDVVDGNKILVDGPDS--GVLRQVIPLKRVSLTDLKVKIPRNAREKTLKKAWATEKIVARWEQTTWCKKLVAKAKRAALTDFDRFKLMVARKEKSAIIKKHV 191
            F R+VE+GRVVL+NYGP+ GKLATIID+VD NK L+DGP+S  GV RQVI  KR++LTDLKV I RNAR+K+L KAW     + +WE ++W KKL A+  RA L+DFDRFK+MVA+K+K+AII K +
Sbjct:    3 FHRYVELGRVVLINYGPEAGKLATIIDIVDQNKCLIDGPESITGVTRQVISYKRLALTDLKVDIQRNARQKSLLKAWTEADTMNKWESSSWAKKLTARKTRAGLSDFDRFKVMVAKKQKTAIIAKKM 129          
BLAST of EWM23964.1 vs. NCBI_GenBank
Match: gi|675206205|ref|XP_008911987.1| (hypothetical protein PPTG_15525 [Phytophthora parasitica INRA-310] >gi|566009201|gb|ETI32112.1| hypothetical protein F443_20997 [Phytophthora parasitica P1569] >gi|567946691|gb|ETK72497.1| hypothetical protein L915_20399 [Phytophthora parasitica] >gi|567975405|gb|ETL25955.1| hypothetical protein L916_20259 [Phytophthora parasitica] >gi|568004852|gb|ETL79162.1| hypothetical protein L917_20132 [Phytophthora parasitica] >gi|568039870|gb|ETM37344.1| hypothetical protein L914_16090 [Phytophthora parasitica] >gi|568087905|gb|ETN02772.1| hypothetical protein PPTG_15525 [Phytophthora parasitica INRA-310] >gi|570312906|gb|ETO60854.1| hypothetical protein F444_21001 [Phytophthora parasitica P1976] >gi|570936708|gb|ETP01965.1| hypothetical protein F441_20864 [Phytophthora parasitica CJ01A1] >gi|570967003|gb|ETP30122.1| hypothetical protein F442_20805 [Phytophthora parasitica P10297] >gi|970625782|gb|KUF73668.1| 60S ribosomal protein L14-2 [Phytophthora nicotianae])

HSP 1 Score: 166.392 bits (420), Expect = 1.148e-49
Identity = 84/122 (68.85%), Postives = 94/122 (77.05%), Query Frame = 0
Query:   67 FTRFVEIGRVVLVNYGPDYGKLATIIDVVDGNKILVDGPDS--GVLRQVIPLKRVSLTDLKVKIPRNAREKTLKKAWATEKIVARWEQTTWCKKLVAKAKRAALTDFDRFKLMVARKEKSAI 186
            FTRFV IGRVVL+NYGPD GK+ATIIDVVD NK LVDGP S  GV R VI  KR+SLTDL V IPR AREKTLKKA A    +A+WE +TW KKL  K  RA L DFDRFK M+ARK+KS++
Sbjct:    3 FTRFVSIGRVVLINYGPDAGKIATIIDVVDENKALVDGPFSVTGVNRHVINFKRLSLTDLTVDIPRQAREKTLKKALAKADTLAKWESSTWAKKLQNKKTRAELNDFDRFKAMIARKQKSSL 124          
BLAST of EWM23964.1 vs. NCBI_GenBank
Match: gi|325186380|emb|CCA20885.1| (60S ribosomal protein L14 putative [Albugo laibachii Nc14])

HSP 1 Score: 163.696 bits (413), Expect = 1.463e-48
Identity = 81/127 (63.78%), Postives = 95/127 (74.80%), Query Frame = 0
Query:   67 FTRFVEIGRVVLVNYGPDYGKLATIIDVVDGNKILVDGPDS--GVLRQVIPLKRVSLTDLKVKIPRNAREKTLKKAWATEKIVARWEQTTWCKKLVAKAKRAALTDFDRFKLMVARKEKSAIIKKHV 191
            FTRFV IGRV LVNYGPD GK+ATIIDV+D NK L+DGP+S  GV RQVIP KR++LTDL V++PR  REKTLK+A     IV +W  T W KKL  K  RA   DFDRFK M+ARK+KS +IKK +
Sbjct:    3 FTRFVTIGRVALVNYGPDCGKIATIIDVLDENKALIDGPESVTGVRRQVIPFKRLALTDLVVQVPRQPREKTLKQALQKGSIVEKWNNTAWAKKLSKKVTRAQCNDFDRFKTMIARKQKSTLIKKSL 129          
BLAST of EWM23964.1 vs. NCBI_GenBank
Match: gi|635363534|emb|CCI47933.1| (unnamed protein product [Albugo candida])

HSP 1 Score: 162.925 bits (411), Expect = 2.756e-48
Identity = 80/127 (62.99%), Postives = 95/127 (74.80%), Query Frame = 0
Query:   67 FTRFVEIGRVVLVNYGPDYGKLATIIDVVDGNKILVDGPDS--GVLRQVIPLKRVSLTDLKVKIPRNAREKTLKKAWATEKIVARWEQTTWCKKLVAKAKRAALTDFDRFKLMVARKEKSAIIKKHV 191
            FTRFV IGRV LVNYGPD GK+ATIIDV+D NK L+DGP+S  GV RQVIP KR++LTDL V++PR  REKTLK+A     IV +W  T W KKL  K  RA   DFDRFK M+ARK+KS ++KK +
Sbjct:    3 FTRFVTIGRVALVNYGPDCGKIATIIDVLDENKALIDGPESVTGVRRQVIPFKRLALTDLVVQVPRQPREKTLKQALQKGSIVEKWNNTAWAKKLSKKVTRAQCNDFDRFKTMIARKQKSTLVKKSL 129          
BLAST of EWM23964.1 vs. NCBI_GenBank
Match: gi|1173956708|gb|OQS03429.1| (60S ribosomal protein L14 [Thraustotheca clavata])

HSP 1 Score: 162.925 bits (411), Expect = 3.211e-48
Identity = 82/127 (64.57%), Postives = 96/127 (75.59%), Query Frame = 0
Query:   67 FTRFVEIGRVVLVNYGPDYGKLATIIDVVDGNKILVDGPDS--GVLRQVIPLKRVSLTDLKVKIPRNAREKTLKKAWATEKIVARWEQTTWCKKLVAKAKRAALTDFDRFKLMVARKEKSAIIKKHV 191
            F+RFV IGRV L+NYGPD GKLATIIDVVD NK LV+GP S  GV R VI  KR++LTDL VKIPR ARE TLKKA     I+ +W  T W KK+ AK  RA L+DFDRFK M+ARK+KS++IKK +
Sbjct:    3 FSRFVTIGRVALINYGPDAGKLATIIDVVDENKCLVEGPYSVTGVNRHVISFKRLALTDLTVKIPRQAREATLKKALVKADILNKWAATAWSKKIQAKKTRAGLSDFDRFKAMIARKQKSSLIKKQL 129          
The following BLAST results are available for this feature:
BLAST of EWM23964.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585105250|gb|EWM23964.1|2.735e-137100.00ribosomal protein l14 [Nannochloropsis gaditana][more]
gi|953487758|emb|CEG48586.1|1.605e-5061.6460s ribosomal protein [Plasmopara halstedii][more]
gi|1210516316|dbj|GAX24814.1|1.676e-5063.49large subunit ribosomal protein L14e [Fistulifera ... [more]
gi|223995201|ref|XP_002287284.1|4.216e-5063.28RL14, ribosomal protein 14 60S large ribosomal sub... [more]
gi|676389913|ref|XP_009038235.1|4.719e-5067.97hypothetical protein AURANDRAFT_28296, partial [Au... [more]
gi|219113413|ref|XP_002186290.1|8.869e-5062.20predicted protein [Phaeodactylum tricornutum CCAP ... [more]
gi|675206205|ref|XP_008911987.1|1.148e-4968.85hypothetical protein PPTG_15525 [Phytophthora para... [more]
gi|325186380|emb|CCA20885.1|1.463e-4863.7860S ribosomal protein L14 putative [Albugo laibach... [more]
gi|635363534|emb|CCI47933.1|2.756e-4862.99unnamed protein product [Albugo candida][more]
gi|1173956708|gb|OQS03429.1|3.211e-4864.5760S ribosomal protein L14 [Thraustotheca clavata][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6727rna6727Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications