EWM23964.1, cds6711 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM23964.1 vs. NCBI_GenBank
Match: gi|585105250|gb|EWM23964.1| (ribosomal protein l14 [Nannochloropsis gaditana]) HSP 1 Score: 390.193 bits (1001), Expect = 2.735e-137 Identity = 192/192 (100.00%), Postives = 192/192 (100.00%), Query Frame = 0
Query: 1 MLTLQLSATALWRLGVSSAIRIPASSSQPLCCLRVLACPPSCPLYTTTSHRYSYSFSEASVKMVKLFTRFVEIGRVVLVNYGPDYGKLATIIDVVDGNKILVDGPDSGVLRQVIPLKRVSLTDLKVKIPRNAREKTLKKAWATEKIVARWEQTTWCKKLVAKAKRAALTDFDRFKLMVARKEKSAIIKKHVK 192
MLTLQLSATALWRLGVSSAIRIPASSSQPLCCLRVLACPPSCPLYTTTSHRYSYSFSEASVKMVKLFTRFVEIGRVVLVNYGPDYGKLATIIDVVDGNKILVDGPDSGVLRQVIPLKRVSLTDLKVKIPRNAREKTLKKAWATEKIVARWEQTTWCKKLVAKAKRAALTDFDRFKLMVARKEKSAIIKKHVK
Sbjct: 1 MLTLQLSATALWRLGVSSAIRIPASSSQPLCCLRVLACPPSCPLYTTTSHRYSYSFSEASVKMVKLFTRFVEIGRVVLVNYGPDYGKLATIIDVVDGNKILVDGPDSGVLRQVIPLKRVSLTDLKVKIPRNAREKTLKKAWATEKIVARWEQTTWCKKLVAKAKRAALTDFDRFKLMVARKEKSAIIKKHVK 192
BLAST of EWM23964.1 vs. NCBI_GenBank
Match: gi|953487758|emb|CEG48586.1| (60s ribosomal protein [Plasmopara halstedii]) HSP 1 Score: 169.474 bits (428), Expect = 1.605e-50 Identity = 90/146 (61.64%), Postives = 105/146 (71.92%), Query Frame = 0
Query: 57 SEASVKMVKL---------FTRFVEIGRVVLVNYGPDYGKLATIIDVVDGNKILVDGPDS--GVLRQVIPLKRVSLTDLKVKIPRNAREKTLKKAWATEKIVARWEQTTWCKKLVAKAKRAALTDFDRFKLMVARKEKSAIIKKHV 191
ASV +V+L FTRFV IGRVVL+NYGPD GK+ATIIDVVD NK LVDGP S GV R VI KR+SLTDL V IPR AREKTLKKA A +A+WE +TW KK+ K RA L DF+RFK M+ARK+K+++IKK V
Sbjct: 13 GHASVLLVRLAFYLSSAMTFTRFVSIGRVVLINYGPDAGKIATIIDVVDENKALVDGPFSVTGVNRHVINFKRLSLTDLTVDIPRQAREKTLKKALAKADTLAKWEASTWSKKIQNKKTRAELNDFERFKSMIARKQKNSLIKKAV 158
BLAST of EWM23964.1 vs. NCBI_GenBank
Match: gi|1210516316|dbj|GAX24814.1| (large subunit ribosomal protein L14e [Fistulifera solaris] >gi|1210523260|dbj|GAX17897.1| large subunit ribosomal protein L14e [Fistulifera solaris]) HSP 1 Score: 168.318 bits (425), Expect = 1.676e-50 Identity = 80/126 (63.49%), Postives = 100/126 (79.37%), Query Frame = 0
Query: 67 FTRFVEIGRVVLVNYGPDYGKLATIIDVVDGNKILVDGPDSGVLRQVIPLKRVSLTDLKVKIPRNAREKTLKKAWATEKIVARWEQTTWCKKLVAKAKRAALTDFDRFKLMVARKEKSAIIKKHVK 192
F RF+E+GR+VL+NYGP+ GKLAT+IDVVD NK L+DGP +G RQVI R++LTDL VKI RNAR KTL KAW +A WE+++W KKL+AK KRA+L DFDRFK+MVARK+K II+K +K
Sbjct: 3 FQRFMEVGRIVLINYGPEAGKLATVIDVVDQNKCLIDGPQTG--RQVISFTRIALTDLTVKIQRNARPKTLAKAWEEAGTLAAWEKSSWAKKLIAKKKRASLNDFDRFKVMVARKQKREIIEKKMK 126
BLAST of EWM23964.1 vs. NCBI_GenBank
Match: gi|223995201|ref|XP_002287284.1| (RL14, ribosomal protein 14 60S large ribosomal subunit [Thalassiosira pseudonana CCMP1335] >gi|220976400|gb|EED94727.1| RL14, ribosomal protein 14 60S large ribosomal subunit [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 167.548 bits (423), Expect = 4.216e-50 Identity = 81/128 (63.28%), Postives = 103/128 (80.47%), Query Frame = 0
Query: 67 FTRFVEIGRVVLVNYGPDYGKLATIIDVVDGNKILVDGPD--SGVLRQVIPLKRVSLTDLKVKIPRNAREKTLKKAWATEKIVARWEQTTWCKKLVAKAKRAALTDFDRFKLMVARKEKSAIIKKHVK 192
F+R+VE+GRVVL+ YGPD GKLAT+IDVVD NK LV GP+ +GV RQVIP +R++LTDL VKI R+AR K LK AWA +A+WE ++W KKL K+KRAAL+DFDRFK+MVA+K+KS II + +K
Sbjct: 3 FSRYVEVGRVVLITYGPDAGKLATVIDVVDQNKCLVQGPEEITGVKRQVIPYRRIALTDLTVKIQRSARAKQLKAAWAEGDTLAKWEGSSWAKKLDGKSKRAALSDFDRFKVMVAKKQKSRIIAQKIK 130
BLAST of EWM23964.1 vs. NCBI_GenBank
Match: gi|676389913|ref|XP_009038235.1| (hypothetical protein AURANDRAFT_28296, partial [Aureococcus anophagefferens] >gi|323451117|gb|EGB06995.1| hypothetical protein AURANDRAFT_28296, partial [Aureococcus anophagefferens]) HSP 1 Score: 167.162 bits (422), Expect = 4.719e-50 Identity = 87/128 (67.97%), Postives = 107/128 (83.59%), Query Frame = 0
Query: 67 FTRFVEIGRVVLVNYGPDYGKLATIIDVVDGNKILVDGP--DSGVLRQVIPLKRVSLTDLKVKIPRNAREKTLKKAWATEKIVARWEQTTWCKKLVAKAKRAALTDFDRFKLMVARKEKSAIIKKHVK 192
F+RFVE+GRVVL+NYGPD GKLATIID+VDGNK LVDGP +GV RQVIP KRV+LTD+ VKIP+NAR+KTL KAW ++A+W+ ++W KKL AK KRA+LTDF RF+LMVARK++SAI+ VK
Sbjct: 1 FSRFVEVGRVVLINYGPDEGKLATIIDIVDGNKCLVDGPATKTGVARQVIPFKRVALTDIVVKIPKNARQKTLNKAWDEADVLAKWDASSWAKKLAAKKKRASLTDFQRFQLMVARKQRSAIVAAKVK 128
BLAST of EWM23964.1 vs. NCBI_GenBank
Match: gi|219113413|ref|XP_002186290.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|209583140|gb|ACI65760.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 166.777 bits (421), Expect = 8.869e-50 Identity = 79/127 (62.20%), Postives = 101/127 (79.53%), Query Frame = 0
Query: 67 FTRFVEIGRVVLVNYGPDYGKLATIIDVVDGNKILVDGPDS--GVLRQVIPLKRVSLTDLKVKIPRNAREKTLKKAWATEKIVARWEQTTWCKKLVAKAKRAALTDFDRFKLMVARKEKSAIIKKHV 191
F R+VE+GRVVL+NYGP+ GKLATIID+VD NK L+DGP+S GV RQVI KR++LTDLKV I RNAR+K+L KAW + +WE ++W KKL A+ RA L+DFDRFK+MVA+K+K+AII K +
Sbjct: 3 FHRYVELGRVVLINYGPEAGKLATIIDIVDQNKCLIDGPESITGVTRQVISYKRLALTDLKVDIQRNARQKSLLKAWTEADTMNKWESSSWAKKLTARKTRAGLSDFDRFKVMVAKKQKTAIIAKKM 129
BLAST of EWM23964.1 vs. NCBI_GenBank
Match: gi|675206205|ref|XP_008911987.1| (hypothetical protein PPTG_15525 [Phytophthora parasitica INRA-310] >gi|566009201|gb|ETI32112.1| hypothetical protein F443_20997 [Phytophthora parasitica P1569] >gi|567946691|gb|ETK72497.1| hypothetical protein L915_20399 [Phytophthora parasitica] >gi|567975405|gb|ETL25955.1| hypothetical protein L916_20259 [Phytophthora parasitica] >gi|568004852|gb|ETL79162.1| hypothetical protein L917_20132 [Phytophthora parasitica] >gi|568039870|gb|ETM37344.1| hypothetical protein L914_16090 [Phytophthora parasitica] >gi|568087905|gb|ETN02772.1| hypothetical protein PPTG_15525 [Phytophthora parasitica INRA-310] >gi|570312906|gb|ETO60854.1| hypothetical protein F444_21001 [Phytophthora parasitica P1976] >gi|570936708|gb|ETP01965.1| hypothetical protein F441_20864 [Phytophthora parasitica CJ01A1] >gi|570967003|gb|ETP30122.1| hypothetical protein F442_20805 [Phytophthora parasitica P10297] >gi|970625782|gb|KUF73668.1| 60S ribosomal protein L14-2 [Phytophthora nicotianae]) HSP 1 Score: 166.392 bits (420), Expect = 1.148e-49 Identity = 84/122 (68.85%), Postives = 94/122 (77.05%), Query Frame = 0
Query: 67 FTRFVEIGRVVLVNYGPDYGKLATIIDVVDGNKILVDGPDS--GVLRQVIPLKRVSLTDLKVKIPRNAREKTLKKAWATEKIVARWEQTTWCKKLVAKAKRAALTDFDRFKLMVARKEKSAI 186
FTRFV IGRVVL+NYGPD GK+ATIIDVVD NK LVDGP S GV R VI KR+SLTDL V IPR AREKTLKKA A +A+WE +TW KKL K RA L DFDRFK M+ARK+KS++
Sbjct: 3 FTRFVSIGRVVLINYGPDAGKIATIIDVVDENKALVDGPFSVTGVNRHVINFKRLSLTDLTVDIPRQAREKTLKKALAKADTLAKWESSTWAKKLQNKKTRAELNDFDRFKAMIARKQKSSL 124
BLAST of EWM23964.1 vs. NCBI_GenBank
Match: gi|325186380|emb|CCA20885.1| (60S ribosomal protein L14 putative [Albugo laibachii Nc14]) HSP 1 Score: 163.696 bits (413), Expect = 1.463e-48 Identity = 81/127 (63.78%), Postives = 95/127 (74.80%), Query Frame = 0
Query: 67 FTRFVEIGRVVLVNYGPDYGKLATIIDVVDGNKILVDGPDS--GVLRQVIPLKRVSLTDLKVKIPRNAREKTLKKAWATEKIVARWEQTTWCKKLVAKAKRAALTDFDRFKLMVARKEKSAIIKKHV 191
FTRFV IGRV LVNYGPD GK+ATIIDV+D NK L+DGP+S GV RQVIP KR++LTDL V++PR REKTLK+A IV +W T W KKL K RA DFDRFK M+ARK+KS +IKK +
Sbjct: 3 FTRFVTIGRVALVNYGPDCGKIATIIDVLDENKALIDGPESVTGVRRQVIPFKRLALTDLVVQVPRQPREKTLKQALQKGSIVEKWNNTAWAKKLSKKVTRAQCNDFDRFKTMIARKQKSTLIKKSL 129
BLAST of EWM23964.1 vs. NCBI_GenBank
Match: gi|635363534|emb|CCI47933.1| (unnamed protein product [Albugo candida]) HSP 1 Score: 162.925 bits (411), Expect = 2.756e-48 Identity = 80/127 (62.99%), Postives = 95/127 (74.80%), Query Frame = 0
Query: 67 FTRFVEIGRVVLVNYGPDYGKLATIIDVVDGNKILVDGPDS--GVLRQVIPLKRVSLTDLKVKIPRNAREKTLKKAWATEKIVARWEQTTWCKKLVAKAKRAALTDFDRFKLMVARKEKSAIIKKHV 191
FTRFV IGRV LVNYGPD GK+ATIIDV+D NK L+DGP+S GV RQVIP KR++LTDL V++PR REKTLK+A IV +W T W KKL K RA DFDRFK M+ARK+KS ++KK +
Sbjct: 3 FTRFVTIGRVALVNYGPDCGKIATIIDVLDENKALIDGPESVTGVRRQVIPFKRLALTDLVVQVPRQPREKTLKQALQKGSIVEKWNNTAWAKKLSKKVTRAQCNDFDRFKTMIARKQKSTLVKKSL 129
BLAST of EWM23964.1 vs. NCBI_GenBank
Match: gi|1173956708|gb|OQS03429.1| (60S ribosomal protein L14 [Thraustotheca clavata]) HSP 1 Score: 162.925 bits (411), Expect = 3.211e-48 Identity = 82/127 (64.57%), Postives = 96/127 (75.59%), Query Frame = 0
Query: 67 FTRFVEIGRVVLVNYGPDYGKLATIIDVVDGNKILVDGPDS--GVLRQVIPLKRVSLTDLKVKIPRNAREKTLKKAWATEKIVARWEQTTWCKKLVAKAKRAALTDFDRFKLMVARKEKSAIIKKHV 191
F+RFV IGRV L+NYGPD GKLATIIDVVD NK LV+GP S GV R VI KR++LTDL VKIPR ARE TLKKA I+ +W T W KK+ AK RA L+DFDRFK M+ARK+KS++IKK +
Sbjct: 3 FSRFVTIGRVALINYGPDAGKLATIIDVVDENKCLVEGPYSVTGVNRHVISFKRLALTDLTVKIPRQAREATLKKALVKADILNKWAATAWSKKIQAKKTRAGLSDFDRFKAMIARKQKSSLIKKQL 129 The following BLAST results are available for this feature:
BLAST of EWM23964.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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