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Properties
| Property Name | Value |
|---|
| Product | small rna degrading nuclease 5 |
| Orig transcript id | gnl|cribi|Naga_100027g23.170.mrna |
| Orig protein id | gnl|cribi|Naga_100027g23.170 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002469.1 | supercontig | CM002469.1:329676..332720 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna6717 ID=rna6717|Name=rna6717|organism=Nannochloropsis gaditana|type=mRNA|length=3425bp
ACTGAAGCCGACGTGGAGACAGCCTCAGGCCGTCCACAGCCAAGTCCTTC
CATTTACAATCATGCCACACTGCGGCGCATGCAACGGGAAGTTTGACTCA
ATTCTGAGGGTTGGAACGGGAAACCAGGCAGGCCGAAGCGTCCATGCGTT
TTTGGGTCTCCTGGAGTACTACTTCCCAAAAATGACCTCTTCCTCCTCAG
TGAATAATCAGCCCTCTCTCTCTCATCCATCCCACCGACATCAAAATTTT
CTCCAGGTTTTCCCCTCCTCGGCACATCCTGCCTCAATAATTATGGAGGA
TGAAGATCGCACGCACACCTCGTTGGATGAGAGCGGGATCGTCTCAGGCG
GAGAAAGTGTGATATCGTCCGTGAGTCGGCCTCCCTCCACACTGCCGCCC
GAGGGCACAGGGCCTGCCGGGGTGCCGTCCTCGACCGCCTCCACTGCCTC
AGCTGCAACGAAAAGCGGCGCAGGACGCGCAGGAGGGCGACACAAGGAGC
CGCTCGATTTGACGGATTTAAAAGAAGGCAGAGTGGAAGGTGCGCCGTAC
TTAAAGGGCGAGCTACAGCGAGACGTGCAGGGAGACCACATTTTCAAAGG
CGCTTGGGCCATGAGCTATGCGGGCTTTCATGGACCGGACGCCGTCACGA
GCGAGTTCGAGCTCAAGCACAAATCCCTTGACCCCGACGACACCGAGATA
TTTCCATTCGGGGGGGCGTACTCCGGGTGGTACAAGTTGAAGGAACAAGG
CGGGCGAAAGGACATGAAGCACGAGGAGCGGGAGGTGCAGCTCGCATTTC
AGCGCAATTCCGCTGGGGGCTACAACGTGGAAGGGCTAGGCCGAAACCAG
TACGGGCAGTACAAGATCAAAGGGCTTTTGACGGAGGTGAAGACAGACAC
GGCATTGTGCGAGATCTTCCGCATCTACCAACCCGTGGCGGCGCCTCCCC
CTCAGCCTCGTGCCCCGCCCGCCCCCCCCATCCACTCCTCAGCGGCGGCG
GCGGCGGGAAGACGATCGTCCAATTCAAAGAGCGTGCCATTTCCACATAC
AGGGACAGATGCGAGCAAATCTCAACCACCACCGGCGCAACGACCGGGTG
TGCCGACTGCCCGCGCTGGCTCTGGAAGTGCCGCTCCCTACGCGCCCATG
GGAGACTCCTCCCATGGCTTGGGGTCGGCGAGAGGCGGAGCTGGGGAGCG
CGCGGCTGCCGCTAAGAAAAGAGCTTCGTCTGGGAGCATGGGTGGTGGTG
GAGTGGGGGGGGGGGGGGGTTGTCGCGCAAATCGACAGGCGGGGCGGGGG
CAGGAGGGAGGGGTGTTGGTGCGATGGGCGGAAACGGAGCGAACCGGGTC
ATCTCGGAGAAAATGGCCCGTCGATGCTGGCAGATGCTGAAGGACCTGAA
AGATCGGGGCCAGCAGGCGTGCAACTGGTTTCTGCGGCCCGTGACGGAGG
AGGAGGCACCCGGATACTTCCAAGTGATCGAAAACCCGATGGACCTGGCG
ACCGTGGACAAGAAGCTCCGGCACAAGCTGCACCGAGACTTGCACGACTT
TGCCGCGGATGTCCGCTTGGTCTTCACGAACGCCATGCGGTTCAACCCCG
CCGAGTCGTCGGTGTATCTGGATGCCCAGAAGCTGATGGGCATCTTCAAC
GACATGTACCGGAAGGCCTGCGCGGACTTGAAGACGAACCAGAGTGATGC
TGGCTCCCTAGCCTCCTCGGTAAGCTCGGGCGGAGGCATAGGGAAGGCAG
GGGCTGGCAGGAAAAAGGCCGAGCCGGTGGGGCCGAGGGCAGGCATGGCG
ATGGCGCCGCAGCACGCTTCGCAGGCCTTCCGGGAGCCGGGGGCGGACGC
GAATCCTTTGGCGACGGCGATGGTGGAGAAGTACAAGAACGAAATGAACA
TTGCCTTGACGCAGCTGGTGAAGATGGAGAGAGAGAACACGGTCTTGCGA
GCCAAGCTGGCCTCGGCCCAGAAGCGAAGCGAAGAGCTGGAGCGGGAGGT
GGCTGAGCTTCGCGGCGGGGCAGCAGGCGGGCAAGGCGCAGGGGCGACCT
CGGCGCAAGCGGCGGCAGAGACGGAGCCCGTGACCAAAGAGGAGCGGGAC
AGGCTTGTGACGTATGTGCAGGCCATCGCAGACTCGGGCAACGAGGAGCT
GGCCAGGAACCTGACAGAGCTGATCAAGCAGCACCACCCGCCCTTCGGCG
AGGGTGGGAACTACTCCATCAATGTCTACGCATATGACGACGAAACTGTC
CGGGCGCTTTTGGCATACTGTGAGCCTTTATTTGAGACGGAGGTAGAGGG
AGAAGAGGGAGAGGACAGAGAGGCAGGGTCAGCGAAGGAGCAGGAGCAAG
CTCTTGCTGCCGGGGATGAAGACGGTGCCCGGGAAGAACTCTCCGGCCAA
GAGAACGGTCACGTCCCTCAGCAAGAGAAGCGGGACAGGCCGGAGGAAGT
GGAAAGAGAGGGGGGCGAGAAGCGCCAGAGAACGAGCAGTACCGATATGG
AGGGGGCGGGCGGGGGAGAAGCTTCGGCAATTTTGGAAACGGGGGCAGAG
AGGTCAGGGGAAGGGCAGGATTTGGAAGGGGAGATGGAGAAAGCGGAGGT
GAAGATGGACGACATGGAGGACGAGGAGGCGGCGGCGGCGGATGAAGAGG
AAGCAGGCAATGACGAGGACACAGGGGGGGCCTCAACCCTTCAAAAGTGG
TTAGCCCCGGGAGCCACGGCCACGCAGGAAGGGGAGGCAGGAGGGGATGA
AGATGCTCAGGATGGAGAGGGTAAGGTGGGAGAAGGAGGGGTCGGAGGGA
GTGGGGCAGAGGGCAACATTGCCGGTGATGAGGGGGGAATGGAGAAAAAT
GACCTGTGGGACGCTGCGAGGCAGATGAAAGAGGAGGAATTAAAGCGGGA
GAAGGAGCGAGCTACGGAAGAGGCAGAGCGGCAGCAGGCTTTGTTGCGAG
AGGAGGAGAAGAGAAAGGCAGAGCTTGCAGAAGAAGAGGAACGGCTGCGG
AAAGAGCGCCAGGAAAAGGAGGAGGCTGAAAAACGACGCGTGGAAGAGGA
AGCGGCGAAGAAAGCAAGGGAGATACGTGAGGCGAGGGAGAAGGCGCGTT
TGGATAGGCAGAGGGAGGAAGGCTGAGGAATAAGGGCTGGATGGGGAGGG
ACTTTCCTTTTAGAGCTGTTTCTTCCCGAAAACATGACCAAGCCTTCGTC
CTGGATTCATGTCAGTAGGTCAACCTCTGTGTGTGTGCTGATTAATGTGT
TGTGCAGACATGAGGGTGTTGAATTCTCTTCAGTCTCGGCGCTCATGAAG
TGATATGACAGTCGGGTACGCTTTTACAGCGTCGGCTCTGCCAGCAGACC
GACGATTTGTGGCTGACGATGGACCCAACGTAACGAAAAGGAATTCAAAA
TTTCAAGGCACTCGAGTGTTTCAGG back to topprotein sequence of rna6717 >rna6717-protein ID=rna6717-protein|Name=rna6717|organism=Nannochloropsis gaditana|type=polypeptide|length=456bp
MAALDCEMCLTTEGMEVTRLTLVDEKGEVLLDSFVKPYHDIRDHLTKYSG
ITPEIIAGCETRLEQVQVALLRLVRADTILVGHSLEQDLMVTGLIHLRCV
DTAMLYAHPRGPRLRFALRVLAKRYLQRVIQDSAQGHCSREDAVAALDLV
KLKVERGPDFGVEEGFSGGEETRGRESFLERLGGKHGKRCTLLDQSDTLV
RIVRGSTASAVVCRSNEEVLSKAKAQARQVLPPHFLWASFAGARPLTLET
LATKRKRKLYQMQQERIEADASQALATARFAEAGGGTEREAMKLRQRGEV
TSVLSRTSSNNSFSSASNASTSTTTSEAACTRITTAILRDTSGSPTGLTL
TATASTAAATRQHKRFVYRESIMEMVDPDLLRTDQQLAELYEALAPNTLV
FVVAQPDVALPTQLSSQRAAVVGSRKATLSWTQEHEATLQELSKAAQKGV
LMMRVR back to topmRNA from alignment at CM002469.1:329676..332720- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. >rna6717 ID=rna6717|Name=rna6717|organism=Nannochloropsis gaditana|type=mRNA|length=3045bp|location=Sequence derived from alignment at CM002469.1:329676..332720- (Nannochloropsis gaditana)
GGGTACTCGCATCAGGAAAGCTCACCTGCACGCGACAGGCGGACCTTCTC
CTTCACGCATTCGTCACCATCCCCACCTTCCTGAACGAGGGGCCATGACC
TCCCAACCACTCCTGGATTCTGACGCCGTCGCGGCCAGAAAAAGGCCTCT
CCCGAAACTTCAAGCCCATAACGTAAACGTGAACAAAGAAAATGGTGAAG
GGGAGACCCGGGAAAATGAAGGCACGTCCGATGGAGGGCTCGACAAGACG
AGCCGCCGTAAACTTAAAAAGCTCAGGAAGAAAGTACGCAAAGGTCAACT
TTCAGTACAAGATACGGAAGAATGCAAAAAGTATGGTTTAGTAGTACGCG
CCGAAGTGGACTGGGGCGAAGAAATCAAAACAGGGCAGCGGCTTTGTCTC
GGAGCGGGTGACGTTAGACAAGGCCTACTACACATCCTGACTGCCGGCTC
GACGCGCTGCCCCTCCTGGCTTCGGCTTGTCAACGCCCGGCTCCTAACCT
CCGTCGTAGTGGTTAGCTTGGCGAACGTGGACCCATCGTACATGCAAGAT
AACCTCTCACAGCTCCCCTTTCTGCAGGCCTGCTCACGGCCTGTGCCTGT
GCGCTTGTACCACGGGCCAAGCCCGCGGAGGAGCATTTTTCCTCTTCTGT
ACTACACCCGCAAGAAGCAGCAGGGCAATCAAACACAAAAAGGTCCCCAA
AAGGACGGAGATGCCGATGAGAGTGAAGAAGATGAGAAGAAGGAGCGGGG
CGCCAGCGAATTATCTGATACCGCTCAGGGAGATAATTCCGAGGAGGAAG
TCGAAGAGAAAGAAGAGAACGATGAAAATTCATGGGGGAAGGAGGGAACG
AATAATGTGCTGGGCGATGGTGGCGTAATGAGTAGCGCGGACTCAGTTGA
GCGGTACGTCCTGTCTCTTCCCCAGCTCAGGCTGGCTGGGTATCCTCTCC
CGCCGGGAGGGGTGGTCCGCAAGTCGACGGGCTTCAGCGGGAGGGAGCGG
TGTGAAAGCCTCGATATGGAGGACAACGATGGAGAGGATGATGATGACGT
GGGTTGCCCACTTAGTGAGAAGGGAGGGAATGCGGAGAGCGCGGAGAGGA
AGGCGTCATGGCTGGAGTGCGAGGAGACAGGGCGTTGGGGGGAGACCGGG
GACTTGCTGCCCTCCTTGGATAGGGCGCGGCGGATATTGGACAGACTAAG
CGGCATCAAGGTGGGGGGGTCGGCCTACTGCTTCTATGAGACCTTGGAGA
GCGAGTCGGGCTGCCTAGGAGTGACGGAAGGAGGCTGGAGACCCTGTGAG
TAAGGAGGAGGATTGAGCGGGGGCCTCCGGGAAGGCACGTTGTCGTAAAT
TGGTCGCTTTCGTTTTGAGTGATGTTGTGATGCTGACCTTCGCGCCATCA
ATTTCGCCGGTCGCGTCCAATGTTTGGGTAGTGTGGCCTTCCCCTGTCTC
ATCCCATACCTGCACACTGCAGACCGCATGGCTGCCCTGGACTGCGAGAT
GTGCCTGACCACCGAGGGGATGGAGGTGACGCGGCTTACGCTCGTGGACG
AGAAGGGGGAGGTGTTGCTGGACTCTTTCGTCAAGCCCTACCACGATATT
AGGGACCACCTGACCAAGTACTCCGGGATCACGCCGGAGATCATCGCCGG
CTGTGAGACCCGCCTCGAGCAGGTGCAGGTGGCCTTGCTGCGTCTGGTGC
GCGCCGACACGATCCTGGTGGGGCACTCGCTTGAACAGGACCTGATGGTC
ACGGGCCTCATTCATCTCCGCTGCGTCGATACTGCCATGCTCTACGCGCA
CCCGCGGGGCCCTCGTCTGCGTTTCGCCCTGCGTGTGCTGGCCAAGCGGT
ATCTGCAGCGCGTCATCCAAGACTCGGCACAAGGCCACTGCAGCCGGGAG
GATGCGGTGGCGGCTTTGGACTTAGTGAAGCTCAAAGTAGAGCGAGGTCC
AGACTTCGGGGTTGAGGAGGGGTTTTCCGGCGGGGAAGAGACGCGGGGGC
GGGAGAGCTTCTTGGAGCGGCTGGGCGGGAAGCACGGGAAGCGCTGTACG
CTCTTGGATCAGAGTGACACGCTGGTTCGGATCGTCAGGGGAAGCACGGC
CTCGGCTGTAGTGTGCCGGTCGAACGAGGAAGTTCTGAGCAAGGCCAAAG
CCCAGGCCCGGCAGGTGCTCCCACCTCACTTCCTGTGGGCGTCTTTCGCG
GGGGCCCGGCCCCTGACGCTCGAGACTCTGGCCACGAAGCGCAAGAGGAA
GCTGTACCAAATGCAACAAGAGCGGATCGAAGCGGACGCCAGCCAGGCGC
TTGCAACCGCTCGTTTCGCAGAGGCTGGGGGTGGAACAGAGCGAGAAGCG
ATGAAATTGCGTCAGAGAGGGGAGGTGACGAGTGTGTTGAGCCGCACTTC
GAGCAACAACAGCTTCAGCAGCGCGAGCAACGCATCTACGTCGACCACAA
CCAGTGAGGCTGCGTGCACCAGGATCACCACGGCCATCCTGCGCGACACG
AGTGGAAGTCCCACCGGCCTGACCTTGACCGCCACAGCCTCGACAGCGGC
CGCGACGCGACAACACAAACGTTTTGTGTACCGCGAGTCCATCATGGAGA
TGGTGGATCCTGACTTACTTCGCACGGATCAACAACTGGCAGAGCTTTAC
GAAGCATTGGCTCCTAATACTCTTGTTTTCGTGGTAGCCCAACCGGATGT
AGCCCTCCCCACACAGCTGAGCTCTCAGCGTGCGGCCGTCGTCGGCTCGC
GGAAGGCGACGTTGTCGTGGACGCAGGAACACGAGGCGACCCTGCAAGAA
TTGTCAAAGGCGGCTCAAAAGGGTGTCCTTATGATGCGGGTGCGGTGATA
TAGAAGCAAAGGAGCATTGTAAATAGGGGCCCGGCACTTTGTGACCCTGC
ACGGGCGCCATCGGATGCCTCGTCCACGGGTTTTGTGAATAGACGATACT
CGCATTTGAAACCAATACCCAAGATAACGCTTGGAGGCTTTGTATCTATT
CGCTGATTCACGAAAGCAGATCAAAGGCATACTGATCCTGAAACA back to topCoding sequence (CDS) from alignment at CM002469.1:329676..332720- >rna6717 ID=rna6717|Name=rna6717|organism=Nannochloropsis gaditana|type=CDS|length=1371bp|location=Sequence derived from alignment at CM002469.1:329676..332720- (Nannochloropsis gaditana)
ATGGCTGCCCTGGACTGCGAGATGTGCCTGACCACCGAGGGGATGGAGGT
GACGCGGCTTACGCTCGTGGACGAGAAGGGGGAGGTGTTGCTGGACTCTT
TCGTCAAGCCCTACCACGATATTAGGGACCACCTGACCAAGTACTCCGGG
ATCACGCCGGAGATCATCGCCGGCTGTGAGACCCGCCTCGAGCAGGTGCA
GGTGGCCTTGCTGCGTCTGGTGCGCGCCGACACGATCCTGGTGGGGCACT
CGCTTGAACAGGACCTGATGGTCACGGGCCTCATTCATCTCCGCTGCGTC
GATACTGCCATGCTCTACGCGCACCCGCGGGGCCCTCGTCTGCGTTTCGC
CCTGCGTGTGCTGGCCAAGCGGTATCTGCAGCGCGTCATCCAAGACTCGG
CACAAGGCCACTGCAGCCGGGAGGATGCGGTGGCGGCTTTGGACTTAGTG
AAGCTCAAAGTAGAGCGAGGTCCAGACTTCGGGGTTGAGGAGGGGTTTTC
CGGCGGGGAAGAGACGCGGGGGCGGGAGAGCTTCTTGGAGCGGCTGGGCG
GGAAGCACGGGAAGCGCTGTACGCTCTTGGATCAGAGTGACACGCTGGTT
CGGATCGTCAGGGGAAGCACGGCCTCGGCTGTAGTGTGCCGGTCGAACGA
GGAAGTTCTGAGCAAGGCCAAAGCCCAGGCCCGGCAGGTGCTCCCACCTC
ACTTCCTGTGGGCGTCTTTCGCGGGGGCCCGGCCCCTGACGCTCGAGACT
CTGGCCACGAAGCGCAAGAGGAAGCTGTACCAAATGCAACAAGAGCGGAT
CGAAGCGGACGCCAGCCAGGCGCTTGCAACCGCTCGTTTCGCAGAGGCTG
GGGGTGGAACAGAGCGAGAAGCGATGAAATTGCGTCAGAGAGGGGAGGTG
ACGAGTGTGTTGAGCCGCACTTCGAGCAACAACAGCTTCAGCAGCGCGAG
CAACGCATCTACGTCGACCACAACCAGTGAGGCTGCGTGCACCAGGATCA
CCACGGCCATCCTGCGCGACACGAGTGGAAGTCCCACCGGCCTGACCTTG
ACCGCCACAGCCTCGACAGCGGCCGCGACGCGACAACACAAACGTTTTGT
GTACCGCGAGTCCATCATGGAGATGGTGGATCCTGACTTACTTCGCACGG
ATCAACAACTGGCAGAGCTTTACGAAGCATTGGCTCCTAATACTCTTGTT
TTCGTGGTAGCCCAACCGGATGTAGCCCTCCCCACACAGCTGAGCTCTCA
GCGTGCGGCCGTCGTCGGCTCGCGGAAGGCGACGTTGTCGTGGACGCAGG
AACACGAGGCGACCCTGCAAGAATTGTCAAAGGCGGCTCAAAAGGGTGTC
CTTATGATGCGGGTGCGGTGA back to top
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