EWM23992.1, cds6701 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM23992.1 vs. NCBI_GenBank
Match: gi|585105278|gb|EWM23992.1| (small rna degrading nuclease 5 [Nannochloropsis gaditana]) HSP 1 Score: 927.546 bits (2396), Expect = 0.000e+0 Identity = 456/456 (100.00%), Postives = 456/456 (100.00%), Query Frame = 0
Query: 1 MAALDCEMCLTTEGMEVTRLTLVDEKGEVLLDSFVKPYHDIRDHLTKYSGITPEIIAGCETRLEQVQVALLRLVRADTILVGHSLEQDLMVTGLIHLRCVDTAMLYAHPRGPRLRFALRVLAKRYLQRVIQDSAQGHCSREDAVAALDLVKLKVERGPDFGVEEGFSGGEETRGRESFLERLGGKHGKRCTLLDQSDTLVRIVRGSTASAVVCRSNEEVLSKAKAQARQVLPPHFLWASFAGARPLTLETLATKRKRKLYQMQQERIEADASQALATARFAEAGGGTEREAMKLRQRGEVTSVLSRTSSNNSFSSASNASTSTTTSEAACTRITTAILRDTSGSPTGLTLTATASTAAATRQHKRFVYRESIMEMVDPDLLRTDQQLAELYEALAPNTLVFVVAQPDVALPTQLSSQRAAVVGSRKATLSWTQEHEATLQELSKAAQKGVLMMRVR 456
MAALDCEMCLTTEGMEVTRLTLVDEKGEVLLDSFVKPYHDIRDHLTKYSGITPEIIAGCETRLEQVQVALLRLVRADTILVGHSLEQDLMVTGLIHLRCVDTAMLYAHPRGPRLRFALRVLAKRYLQRVIQDSAQGHCSREDAVAALDLVKLKVERGPDFGVEEGFSGGEETRGRESFLERLGGKHGKRCTLLDQSDTLVRIVRGSTASAVVCRSNEEVLSKAKAQARQVLPPHFLWASFAGARPLTLETLATKRKRKLYQMQQERIEADASQALATARFAEAGGGTEREAMKLRQRGEVTSVLSRTSSNNSFSSASNASTSTTTSEAACTRITTAILRDTSGSPTGLTLTATASTAAATRQHKRFVYRESIMEMVDPDLLRTDQQLAELYEALAPNTLVFVVAQPDVALPTQLSSQRAAVVGSRKATLSWTQEHEATLQELSKAAQKGVLMMRVR
Sbjct: 1 MAALDCEMCLTTEGMEVTRLTLVDEKGEVLLDSFVKPYHDIRDHLTKYSGITPEIIAGCETRLEQVQVALLRLVRADTILVGHSLEQDLMVTGLIHLRCVDTAMLYAHPRGPRLRFALRVLAKRYLQRVIQDSAQGHCSREDAVAALDLVKLKVERGPDFGVEEGFSGGEETRGRESFLERLGGKHGKRCTLLDQSDTLVRIVRGSTASAVVCRSNEEVLSKAKAQARQVLPPHFLWASFAGARPLTLETLATKRKRKLYQMQQERIEADASQALATARFAEAGGGTEREAMKLRQRGEVTSVLSRTSSNNSFSSASNASTSTTTSEAACTRITTAILRDTSGSPTGLTLTATASTAAATRQHKRFVYRESIMEMVDPDLLRTDQQLAELYEALAPNTLVFVVAQPDVALPTQLSSQRAAVVGSRKATLSWTQEHEATLQELSKAAQKGVLMMRVR 456
BLAST of EWM23992.1 vs. NCBI_GenBank
Match: gi|635370002|emb|CCI41823.1| (unnamed protein product [Albugo candida]) HSP 1 Score: 219.55 bits (558), Expect = 2.592e-62 Identity = 109/236 (46.19%), Postives = 147/236 (62.29%), Query Frame = 0
Query: 3 ALDCEMCLTTEGMEVTRLTLVDEKGEVLLDSFVKPYHDIRDHLTKYSGITPEIIAGCETRLEQVQVALLRLVRADTILVGHSLEQDLMVTGLIHLRCVDTAMLYAHPRGPRLRFALRVLAKRYLQRVIQDSAQGHCSREDAVAALDLVKLKVERGPDFGVEEGFSGGEETRGRESFLERLGGKHGKRCTLLDQSDTLVRIVRGSTASAVVCRSNEEVLSKAKAQARQVLPPHFLWA 238
ALDCEMC TT+G E+ RLTL+D +LLD FV P + I D+ T+YSGITPE++ C TRL+ +Q L +V A+ IL+GHS+E DL +IH R +DT +L+ HP+GP R ALR LA ++LQRVIQ+ QGHCS EDAVA L LVK KV GP+ F + ++S + L K+ L+ S + R + TASA+ C +N++++S Q PPHF WA
Sbjct: 191 ALDCEMCQTTKGTELCRLTLIDSFETILLDEFVCPENPIVDYCTQYSGITPELMHNCSTRLKDIQDRFLDIVPAEAILIGHSIENDLCALRIIHRRIIDTVLLFPHPKGPPFRSALRFLAAKFLQRVIQNDDQGHCSIEDAVATLQLVKRKVLHGPN------FPSPASHQAKKSLIRELCK--AKKSVLIVDSRSACRSIACDTASAIACDTNDQIISAVVNQLTTGFPPHFTWA 418
BLAST of EWM23992.1 vs. NCBI_GenBank
Match: gi|325191341|emb|CCA26123.1| (exonuclease putative [Albugo laibachii Nc14]) HSP 1 Score: 211.075 bits (536), Expect = 4.270e-59 Identity = 104/236 (44.07%), Postives = 144/236 (61.02%), Query Frame = 0
Query: 3 ALDCEMCLTTEGMEVTRLTLVDEKGEVLLDSFVKPYHDIRDHLTKYSGITPEIIAGCETRLEQVQVALLRLVRADTILVGHSLEQDLMVTGLIHLRCVDTAMLYAHPRGPRLRFALRVLAKRYLQRVIQDSAQGHCSREDAVAALDLVKLKVERGPDFGVEEGFSGGEETRGRESFLERLGGKHGKRCTLLDQSDTLVRIVRGSTASAVVCRSNEEVLSKAKAQARQVLPPHFLWA 238
A+DCEMC TT+G+E+ RLTL+D +LLD FV+P I D+ T+YSG TPE++ C TRLE +Q L +V A+ IL+GHS+E DL +IH R +DT +L+ HP+G R +LR L ++L RVIQ+ AQGHCS EDAVA L LVKLKV GP+ F + +++ + L K+ L+ S + R + TAS + C N++++S Q PPHF WA
Sbjct: 191 AVDCEMCKTTKGIELCRLTLIDSAETILLDDFVRPKSPIVDYCTQYSGFTPELMQSCSTRLEDIQKRFLDIVPAEAILIGHSIENDLCALRIIHRRIIDTVVLFPHPKGLPYRSSLRFLTAKFLHRVIQNDAQGHCSIEDAVATLQLVKLKVLHGPN------FPSPVSHQAKKTLIRELCK--SKKSVLVVDSKSACRSIACDTASGIPCERNDQIVSATVKQLTTGFPPHFTWA 418
BLAST of EWM23992.1 vs. NCBI_GenBank
Match: gi|971510221|dbj|GAQ87994.1| (Exonuclease family protein [Klebsormidium nitens]) HSP 1 Score: 215.698 bits (548), Expect = 7.623e-59 Identity = 117/241 (48.55%), Postives = 155/241 (64.32%), Query Frame = 0
Query: 1 MAALDCEMCLTTEGMEVTRLTLVDEKGEVLLDSFVKPYHDIRDHLTKYSGITPEIIAGCETRLEQVQVALLRLVRADTILVGHSLEQDLMVTGLIHLRCVDTAMLYAHPRGPRLRFALRVLAKRYLQRVIQDSAQGHCSREDAVAALDLVKLKVERGPDFGVEEGFSGGEETRGRESFLERLGGKHGKRCTLLDQSDTLVRIVRGSTASAVVCRSNEEVLSKAKAQARQVLPPHFLWASFA 241
M A+DCEMC T G+E+TR+TLV KG+VLLD VKP + IRD+ TK+SGIT E++ T L+ +Q LL LV A+TILVGHSL+ DL LIH +DTA+ + HPRGP + ALRVLA+R+L R IQ +GH S EDA A ++L +LK++ GP FG G ES +E L G+ GKRCTL+D+ L R G T+ AV+ S++EV++K + +A FLWA A
Sbjct: 391 MVAVDCEMCYTEAGLELTRVTLVSGKGKVLLDKLVKPTNPIRDYNTKFSGITAEMLQDVTTTLQDIQAELLELVSAETILVGHSLQSDLQALKLIHGNNIDTALAFPHPRGPPYKPALRVLAERHLHRTIQGGDKGHDSVEDARATMELAQLKIQNGPSFGEARAIIG-------ESLIELL-GRKGKRCTLVDRRRLLRRFAVG-TSGAVIAESDDEVVAKVRKEAHTPA-TRFLWARLA 621
BLAST of EWM23992.1 vs. NCBI_GenBank
Match: gi|661884435|emb|CDP11992.1| (unnamed protein product [Coffea canephora]) HSP 1 Score: 211.075 bits (536), Expect = 4.833e-58 Identity = 110/241 (45.64%), Postives = 154/241 (63.90%), Query Frame = 0
Query: 1 MAALDCEMCLTTEGMEVTRLTLVDEKGEVLLDSFVKPYHDIRDHLTKYSGITPEIIAGCETRLEQVQVALLRLVRADTILVGHSLEQDLMVTGLIHLRCVDTAMLYAHPRGPRLRFALRVLAKRYLQRVIQDSAQGHCSREDAVAALDLVKLKVERGPDFGVEEGFSGGEETRGRESFLERLGGKHGKRCTLLDQSDTLVRIVRGSTASAVVCRSNEEVLSKAKAQARQVLPPHFLWASFA 241
+ ALDCEMC+T EG E+TR+TLVD KG+V+LD +KP + I D+ T+YSGIT E++ G T L+ +Q L+LV +TILVGHSLE DL+ + H +DTA+LY HPRG + ALRVL++R+L R IQDS GH S EDA A ++L LK+ GPDFG F R+ L L G +GK +++D ++VR + ++V S+++ LSKA+ + R + HF+W FA
Sbjct: 260 ILALDCEMCITREGFELTRVTLVDVKGQVVLDKLIKPSNPIIDYNTRYSGITDEMLNGVTTTLKDIQEEFLQLVYKETILVGHSLENDLLALKIFHDLVIDTAVLYKHPRGKSFKTALRVLSRRFLSREIQDSGNGHDSIEDARATMELALLKIRHGPDFGSPPSFV-------RKKLLTVL-GDYGKTSSIID-GISIVRRYSSELSRSIVVSSDDDALSKARKEVRNDM-VHFIWTQFA 490
BLAST of EWM23992.1 vs. NCBI_GenBank
Match: gi|720046068|ref|XP_010270386.1| (PREDICTED: small RNA degrading nuclease 5 isoform X2 [Nelumbo nucifera]) HSP 1 Score: 206.453 bits (524), Expect = 2.856e-57 Identity = 110/241 (45.64%), Postives = 151/241 (62.66%), Query Frame = 0
Query: 1 MAALDCEMCLTTEGMEVTRLTLVDEKGEVLLDSFVKPYHDIRDHLTKYSGITPEIIAGCETRLEQVQVALLRLVRADTILVGHSLEQDLMVTGLIHLRCVDTAMLYAHPRGPRLRFALRVLAKRYLQRVIQDSAQGHCSREDAVAALDLVKLKVERGPDFGVEEGFSGGEETRGRESFLERLGGKHGKRCTLLDQSDTLVRIVRGSTASAVVCRSNEEVLSKAKAQARQVLPPHFLWASFA 241
M LDCEMC+T G E+TR+TLVD +G+V+LD VKP +DI D+ T+YSGIT E++ G T L+ +Q LL+LV +TILVGHSLE DL+ + H +DTA+LY HPRG + ALRVLA+R+L R IQ S GH S EDA AA++L LK+ GP++G F R+ + L ++GK C+ +D + R GS S +C S++E L KAK + + HF+W F+
Sbjct: 153 MLGLDCEMCVTANGFELTRVTLVDIEGQVVLDKLVKPSNDIIDYNTRYSGITAEMLDGVTTTLKDIQEELLKLVYKETILVGHSLENDLLALKISHDMVIDTAVLYKHPRGGHFKTALRVLARRFLSREIQGSGNGHDSVEDARAAMELALLKIRHGPEYGSPPTFM-------RKKLVTVL-SENGKTCSFIDDVSIVKRYAAGSCHSFPIC-SDDEALLKAKKEVKND-KVHFIWTQFS 383
BLAST of EWM23992.1 vs. NCBI_GenBank
Match: gi|1044587906|ref|XP_017431139.1| (PREDICTED: small RNA degrading nuclease 5 isoform X2 [Vigna angularis]) HSP 1 Score: 205.297 bits (521), Expect = 4.183e-57 Identity = 109/241 (45.23%), Postives = 151/241 (62.66%), Query Frame = 0
Query: 1 MAALDCEMCLTTEGMEVTRLTLVDEKGEVLLDSFVKPYHDIRDHLTKYSGITPEIIAGCETRLEQVQVALLRLVRADTILVGHSLEQDLMVTGLIHLRCVDTAMLYAHPRGPRLRFALRVLAKRYLQRVIQDSAQGHCSREDAVAALDLVKLKVERGPDFGVEEGFSGGEETRGRESFLERLGGKHGKRCTLLDQSDTLVRIVRGSTASAVVCRSNEEVLSKAKAQARQVLPPHFLWASFA 241
M ALDCEMC+T EG E+TR+TLVD KG+VL+D VKP + I D+ T++SGITPE++ G T L +Q L+ V +TILVGHSLE DL+ + H +DTA+LY HPRG + ALR LAK++L R IQ S GH S EDA A L+L LK+ GPDFG F+ R+ FL L + GK +L+D ++V+ +++A+ S++E L+K K + + HF+W F+
Sbjct: 127 MLALDCEMCITNEGFELTRITLVDIKGQVLIDRLVKPSNAIIDYNTRFSGITPEMLNGVTTSLRDIQELFLKFVYEETILVGHSLENDLLALKISHELIIDTAVLYRHPRGTSHKKALRFLAKKFLAREIQQSTNGHDSIEDARATLELALLKIRNGPDFGSPPSFT-------RKKFLSIL-SESGKTSSLIDDI-SIVKRYASESSNAIPVISDDEALAKTKKEVKND-KVHFIWTQFS 357
BLAST of EWM23992.1 vs. NCBI_GenBank
Match: gi|1044587904|ref|XP_017431138.1| (PREDICTED: small RNA degrading nuclease 5 isoform X1 [Vigna angularis]) HSP 1 Score: 205.297 bits (521), Expect = 4.751e-57 Identity = 109/241 (45.23%), Postives = 151/241 (62.66%), Query Frame = 0
Query: 1 MAALDCEMCLTTEGMEVTRLTLVDEKGEVLLDSFVKPYHDIRDHLTKYSGITPEIIAGCETRLEQVQVALLRLVRADTILVGHSLEQDLMVTGLIHLRCVDTAMLYAHPRGPRLRFALRVLAKRYLQRVIQDSAQGHCSREDAVAALDLVKLKVERGPDFGVEEGFSGGEETRGRESFLERLGGKHGKRCTLLDQSDTLVRIVRGSTASAVVCRSNEEVLSKAKAQARQVLPPHFLWASFA 241
M ALDCEMC+T EG E+TR+TLVD KG+VL+D VKP + I D+ T++SGITPE++ G T L +Q L+ V +TILVGHSLE DL+ + H +DTA+LY HPRG + ALR LAK++L R IQ S GH S EDA A L+L LK+ GPDFG F+ R+ FL L + GK +L+D ++V+ +++A+ S++E L+K K + + HF+W F+
Sbjct: 128 MLALDCEMCITNEGFELTRITLVDIKGQVLIDRLVKPSNAIIDYNTRFSGITPEMLNGVTTSLRDIQELFLKFVYEETILVGHSLENDLLALKISHELIIDTAVLYRHPRGTSHKKALRFLAKKFLAREIQQSTNGHDSIEDARATLELALLKIRNGPDFGSPPSFT-------RKKFLSIL-SESGKTSSLIDDI-SIVKRYASESSNAIPVISDDEALAKTKKEVKND-KVHFIWTQFS 358
BLAST of EWM23992.1 vs. NCBI_GenBank
Match: gi|1063521444|ref|XP_007019342.2| (PREDICTED: small RNA degrading nuclease 5 [Theobroma cacao]) HSP 1 Score: 206.068 bits (523), Expect = 1.197e-56 Identity = 111/241 (46.06%), Postives = 152/241 (63.07%), Query Frame = 0
Query: 1 MAALDCEMCLTTEGMEVTRLTLVDEKGEVLLDSFVKPYHDIRDHLTKYSGITPEIIAGCETRLEQVQVALLRLVRADTILVGHSLEQDLMVTGLIHLRCVDTAMLYAHPRGPRLRFALRVLAKRYLQRVIQDSAQGHCSREDAVAALDLVKLKVERGPDFGVEEGFSGGEETRGRESFLERLGGKHGKRCTLLDQSDTLVRIVRGSTASAVVCRSNEEVLSKAKAQARQVLPPHFLWASFA 241
+ ALDCEMC+T+EG E+TR+TLVD KG+V+LD VKP + I D+ T+YSGIT E+++G T L+ VQ L+LV DTIL+GHSLE DL+ + H +DT++LY HPRG + ALRVLAKR+L IQ S GH S EDA AA++L LK++ GPDFG F R+ L L G+ GK + +D + R S+ + VC S++E L KA+ + + HF+W F+
Sbjct: 210 ILALDCEMCITSEGFELTRVTLVDIKGQVVLDKLVKPSNPITDYNTRYSGITYEMLSGVTTSLQDVQEDFLKLVYKDTILIGHSLENDLLALKISHDLVIDTSVLYKHPRGGSYKTALRVLAKRFLSSEIQQSGNGHDSIEDARAAMELALLKIKNGPDFGSPPSFM-------RKKLLSLL-GECGKTSSFIDDISIVKRYASESSHAIPVC-SDDEALLKARKEVKND-RVHFVWTHFS 440
BLAST of EWM23992.1 vs. NCBI_GenBank
Match: gi|823165100|ref|XP_012482489.1| (PREDICTED: small RNA degrading nuclease 5 [Gossypium raimondii] >gi|763761832|gb|KJB29086.1| hypothetical protein B456_005G083600 [Gossypium raimondii]) HSP 1 Score: 206.068 bits (523), Expect = 1.400e-56 Identity = 113/241 (46.89%), Postives = 149/241 (61.83%), Query Frame = 0
Query: 1 MAALDCEMCLTTEGMEVTRLTLVDEKGEVLLDSFVKPYHDIRDHLTKYSGITPEIIAGCETRLEQVQVALLRLVRADTILVGHSLEQDLMVTGLIHLRCVDTAMLYAHPRGPRLRFALRVLAKRYLQRVIQDSAQGHCSREDAVAALDLVKLKVERGPDFGVEEGFSGGEETRGRESFLERLGGKHGKRCTLLDQSDTLVRIVRGSTASAVVCRSNEEVLSKAKAQARQVLPPHFLWASFA 241
M ALDCEMC+T+EG E+TR+TLVD KG+V+LD V P + I D+ T++SGIT E+++G T L+ VQ L LV DTILVGHSLE DL+ + H +DT++LY HPRG + ALRVLAKR+L R IQ S GH S EDA AA+DL LK+ GPDFG F R L L G+ GK + +D + R S+ + VC S++E L KA+ + + HF+W F+
Sbjct: 209 MLALDCEMCITSEGFELTRVTLVDIKGQVVLDKLVNPSNPITDYNTRFSGITYEMLSGVTTTLQNVQEDFLMLVHKDTILVGHSLENDLLALKISHDLIIDTSVLYKHPRGGSYKSALRVLAKRFLSREIQQSGSGHDSIEDARAAMDLALLKIRNGPDFGSPPSFM-------RRKLLTLL-GECGKTSSFIDDISIVKRYASESSHAIPVC-SDDEALLKARKEVKNDR-VHFVWTQFS 439 The following BLAST results are available for this feature:
BLAST of EWM23992.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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