EWM23992.1, cds6701 (CDS) Nannochloropsis gaditana

Overview
NameEWM23992.1
Unique Namecds6701
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002469.1:329873..331243 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM23992.1
Productsmall rna degrading nuclease 5
Orig transcript idgnl|cribi|Naga_100027g23.170.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002469.1supercontigCM002469.1:329873..331243 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0004518nuclease activity
GO:0003676nucleic acid binding
GO:0004527exonuclease activity
Vocabulary: INTERPRO
TermDefinition
IPR012337RNaseH-like_dom
IPR013520Exonuclease_RNaseT/DNA_pol3
IPR006055Exonuclease
Homology
BLAST of EWM23992.1 vs. NCBI_GenBank
Match: gi|585105278|gb|EWM23992.1| (small rna degrading nuclease 5 [Nannochloropsis gaditana])

HSP 1 Score: 927.546 bits (2396), Expect = 0.000e+0
Identity = 456/456 (100.00%), Postives = 456/456 (100.00%), Query Frame = 0
Query:    1 MAALDCEMCLTTEGMEVTRLTLVDEKGEVLLDSFVKPYHDIRDHLTKYSGITPEIIAGCETRLEQVQVALLRLVRADTILVGHSLEQDLMVTGLIHLRCVDTAMLYAHPRGPRLRFALRVLAKRYLQRVIQDSAQGHCSREDAVAALDLVKLKVERGPDFGVEEGFSGGEETRGRESFLERLGGKHGKRCTLLDQSDTLVRIVRGSTASAVVCRSNEEVLSKAKAQARQVLPPHFLWASFAGARPLTLETLATKRKRKLYQMQQERIEADASQALATARFAEAGGGTEREAMKLRQRGEVTSVLSRTSSNNSFSSASNASTSTTTSEAACTRITTAILRDTSGSPTGLTLTATASTAAATRQHKRFVYRESIMEMVDPDLLRTDQQLAELYEALAPNTLVFVVAQPDVALPTQLSSQRAAVVGSRKATLSWTQEHEATLQELSKAAQKGVLMMRVR 456
            MAALDCEMCLTTEGMEVTRLTLVDEKGEVLLDSFVKPYHDIRDHLTKYSGITPEIIAGCETRLEQVQVALLRLVRADTILVGHSLEQDLMVTGLIHLRCVDTAMLYAHPRGPRLRFALRVLAKRYLQRVIQDSAQGHCSREDAVAALDLVKLKVERGPDFGVEEGFSGGEETRGRESFLERLGGKHGKRCTLLDQSDTLVRIVRGSTASAVVCRSNEEVLSKAKAQARQVLPPHFLWASFAGARPLTLETLATKRKRKLYQMQQERIEADASQALATARFAEAGGGTEREAMKLRQRGEVTSVLSRTSSNNSFSSASNASTSTTTSEAACTRITTAILRDTSGSPTGLTLTATASTAAATRQHKRFVYRESIMEMVDPDLLRTDQQLAELYEALAPNTLVFVVAQPDVALPTQLSSQRAAVVGSRKATLSWTQEHEATLQELSKAAQKGVLMMRVR
Sbjct:    1 MAALDCEMCLTTEGMEVTRLTLVDEKGEVLLDSFVKPYHDIRDHLTKYSGITPEIIAGCETRLEQVQVALLRLVRADTILVGHSLEQDLMVTGLIHLRCVDTAMLYAHPRGPRLRFALRVLAKRYLQRVIQDSAQGHCSREDAVAALDLVKLKVERGPDFGVEEGFSGGEETRGRESFLERLGGKHGKRCTLLDQSDTLVRIVRGSTASAVVCRSNEEVLSKAKAQARQVLPPHFLWASFAGARPLTLETLATKRKRKLYQMQQERIEADASQALATARFAEAGGGTEREAMKLRQRGEVTSVLSRTSSNNSFSSASNASTSTTTSEAACTRITTAILRDTSGSPTGLTLTATASTAAATRQHKRFVYRESIMEMVDPDLLRTDQQLAELYEALAPNTLVFVVAQPDVALPTQLSSQRAAVVGSRKATLSWTQEHEATLQELSKAAQKGVLMMRVR 456          
BLAST of EWM23992.1 vs. NCBI_GenBank
Match: gi|635370002|emb|CCI41823.1| (unnamed protein product [Albugo candida])

HSP 1 Score: 219.55 bits (558), Expect = 2.592e-62
Identity = 109/236 (46.19%), Postives = 147/236 (62.29%), Query Frame = 0
Query:    3 ALDCEMCLTTEGMEVTRLTLVDEKGEVLLDSFVKPYHDIRDHLTKYSGITPEIIAGCETRLEQVQVALLRLVRADTILVGHSLEQDLMVTGLIHLRCVDTAMLYAHPRGPRLRFALRVLAKRYLQRVIQDSAQGHCSREDAVAALDLVKLKVERGPDFGVEEGFSGGEETRGRESFLERLGGKHGKRCTLLDQSDTLVRIVRGSTASAVVCRSNEEVLSKAKAQARQVLPPHFLWA 238
            ALDCEMC TT+G E+ RLTL+D    +LLD FV P + I D+ T+YSGITPE++  C TRL+ +Q   L +V A+ IL+GHS+E DL    +IH R +DT +L+ HP+GP  R ALR LA ++LQRVIQ+  QGHCS EDAVA L LVK KV  GP+      F      + ++S +  L     K+  L+  S +  R +   TASA+ C +N++++S    Q     PPHF WA
Sbjct:  191 ALDCEMCQTTKGTELCRLTLIDSFETILLDEFVCPENPIVDYCTQYSGITPELMHNCSTRLKDIQDRFLDIVPAEAILIGHSIENDLCALRIIHRRIIDTVLLFPHPKGPPFRSALRFLAAKFLQRVIQNDDQGHCSIEDAVATLQLVKRKVLHGPN------FPSPASHQAKKSLIRELCK--AKKSVLIVDSRSACRSIACDTASAIACDTNDQIISAVVNQLTTGFPPHFTWA 418          
BLAST of EWM23992.1 vs. NCBI_GenBank
Match: gi|325191341|emb|CCA26123.1| (exonuclease putative [Albugo laibachii Nc14])

HSP 1 Score: 211.075 bits (536), Expect = 4.270e-59
Identity = 104/236 (44.07%), Postives = 144/236 (61.02%), Query Frame = 0
Query:    3 ALDCEMCLTTEGMEVTRLTLVDEKGEVLLDSFVKPYHDIRDHLTKYSGITPEIIAGCETRLEQVQVALLRLVRADTILVGHSLEQDLMVTGLIHLRCVDTAMLYAHPRGPRLRFALRVLAKRYLQRVIQDSAQGHCSREDAVAALDLVKLKVERGPDFGVEEGFSGGEETRGRESFLERLGGKHGKRCTLLDQSDTLVRIVRGSTASAVVCRSNEEVLSKAKAQARQVLPPHFLWA 238
            A+DCEMC TT+G+E+ RLTL+D    +LLD FV+P   I D+ T+YSG TPE++  C TRLE +Q   L +V A+ IL+GHS+E DL    +IH R +DT +L+ HP+G   R +LR L  ++L RVIQ+ AQGHCS EDAVA L LVKLKV  GP+      F      + +++ +  L     K+  L+  S +  R +   TAS + C  N++++S    Q     PPHF WA
Sbjct:  191 AVDCEMCKTTKGIELCRLTLIDSAETILLDDFVRPKSPIVDYCTQYSGFTPELMQSCSTRLEDIQKRFLDIVPAEAILIGHSIENDLCALRIIHRRIIDTVVLFPHPKGLPYRSSLRFLTAKFLHRVIQNDAQGHCSIEDAVATLQLVKLKVLHGPN------FPSPVSHQAKKTLIRELCK--SKKSVLVVDSKSACRSIACDTASGIPCERNDQIVSATVKQLTTGFPPHFTWA 418          
BLAST of EWM23992.1 vs. NCBI_GenBank
Match: gi|971510221|dbj|GAQ87994.1| (Exonuclease family protein [Klebsormidium nitens])

HSP 1 Score: 215.698 bits (548), Expect = 7.623e-59
Identity = 117/241 (48.55%), Postives = 155/241 (64.32%), Query Frame = 0
Query:    1 MAALDCEMCLTTEGMEVTRLTLVDEKGEVLLDSFVKPYHDIRDHLTKYSGITPEIIAGCETRLEQVQVALLRLVRADTILVGHSLEQDLMVTGLIHLRCVDTAMLYAHPRGPRLRFALRVLAKRYLQRVIQDSAQGHCSREDAVAALDLVKLKVERGPDFGVEEGFSGGEETRGRESFLERLGGKHGKRCTLLDQSDTLVRIVRGSTASAVVCRSNEEVLSKAKAQARQVLPPHFLWASFA 241
            M A+DCEMC T  G+E+TR+TLV  KG+VLLD  VKP + IRD+ TK+SGIT E++    T L+ +Q  LL LV A+TILVGHSL+ DL    LIH   +DTA+ + HPRGP  + ALRVLA+R+L R IQ   +GH S EDA A ++L +LK++ GP FG      G       ES +E L G+ GKRCTL+D+   L R   G T+ AV+  S++EV++K + +A       FLWA  A
Sbjct:  391 MVAVDCEMCYTEAGLELTRVTLVSGKGKVLLDKLVKPTNPIRDYNTKFSGITAEMLQDVTTTLQDIQAELLELVSAETILVGHSLQSDLQALKLIHGNNIDTALAFPHPRGPPYKPALRVLAERHLHRTIQGGDKGHDSVEDARATMELAQLKIQNGPSFGEARAIIG-------ESLIELL-GRKGKRCTLVDRRRLLRRFAVG-TSGAVIAESDDEVVAKVRKEAHTPA-TRFLWARLA 621          
BLAST of EWM23992.1 vs. NCBI_GenBank
Match: gi|661884435|emb|CDP11992.1| (unnamed protein product [Coffea canephora])

HSP 1 Score: 211.075 bits (536), Expect = 4.833e-58
Identity = 110/241 (45.64%), Postives = 154/241 (63.90%), Query Frame = 0
Query:    1 MAALDCEMCLTTEGMEVTRLTLVDEKGEVLLDSFVKPYHDIRDHLTKYSGITPEIIAGCETRLEQVQVALLRLVRADTILVGHSLEQDLMVTGLIHLRCVDTAMLYAHPRGPRLRFALRVLAKRYLQRVIQDSAQGHCSREDAVAALDLVKLKVERGPDFGVEEGFSGGEETRGRESFLERLGGKHGKRCTLLDQSDTLVRIVRGSTASAVVCRSNEEVLSKAKAQARQVLPPHFLWASFA 241
            + ALDCEMC+T EG E+TR+TLVD KG+V+LD  +KP + I D+ T+YSGIT E++ G  T L+ +Q   L+LV  +TILVGHSLE DL+   + H   +DTA+LY HPRG   + ALRVL++R+L R IQDS  GH S EDA A ++L  LK+  GPDFG    F        R+  L  L G +GK  +++D   ++VR      + ++V  S+++ LSKA+ + R  +  HF+W  FA
Sbjct:  260 ILALDCEMCITREGFELTRVTLVDVKGQVVLDKLIKPSNPIIDYNTRYSGITDEMLNGVTTTLKDIQEEFLQLVYKETILVGHSLENDLLALKIFHDLVIDTAVLYKHPRGKSFKTALRVLSRRFLSREIQDSGNGHDSIEDARATMELALLKIRHGPDFGSPPSFV-------RKKLLTVL-GDYGKTSSIID-GISIVRRYSSELSRSIVVSSDDDALSKARKEVRNDM-VHFIWTQFA 490          
BLAST of EWM23992.1 vs. NCBI_GenBank
Match: gi|720046068|ref|XP_010270386.1| (PREDICTED: small RNA degrading nuclease 5 isoform X2 [Nelumbo nucifera])

HSP 1 Score: 206.453 bits (524), Expect = 2.856e-57
Identity = 110/241 (45.64%), Postives = 151/241 (62.66%), Query Frame = 0
Query:    1 MAALDCEMCLTTEGMEVTRLTLVDEKGEVLLDSFVKPYHDIRDHLTKYSGITPEIIAGCETRLEQVQVALLRLVRADTILVGHSLEQDLMVTGLIHLRCVDTAMLYAHPRGPRLRFALRVLAKRYLQRVIQDSAQGHCSREDAVAALDLVKLKVERGPDFGVEEGFSGGEETRGRESFLERLGGKHGKRCTLLDQSDTLVRIVRGSTASAVVCRSNEEVLSKAKAQARQVLPPHFLWASFA 241
            M  LDCEMC+T  G E+TR+TLVD +G+V+LD  VKP +DI D+ T+YSGIT E++ G  T L+ +Q  LL+LV  +TILVGHSLE DL+   + H   +DTA+LY HPRG   + ALRVLA+R+L R IQ S  GH S EDA AA++L  LK+  GP++G    F        R+  +  L  ++GK C+ +D    + R   GS  S  +C S++E L KAK + +     HF+W  F+
Sbjct:  153 MLGLDCEMCVTANGFELTRVTLVDIEGQVVLDKLVKPSNDIIDYNTRYSGITAEMLDGVTTTLKDIQEELLKLVYKETILVGHSLENDLLALKISHDMVIDTAVLYKHPRGGHFKTALRVLARRFLSREIQGSGNGHDSVEDARAAMELALLKIRHGPEYGSPPTFM-------RKKLVTVL-SENGKTCSFIDDVSIVKRYAAGSCHSFPIC-SDDEALLKAKKEVKND-KVHFIWTQFS 383          
BLAST of EWM23992.1 vs. NCBI_GenBank
Match: gi|1044587906|ref|XP_017431139.1| (PREDICTED: small RNA degrading nuclease 5 isoform X2 [Vigna angularis])

HSP 1 Score: 205.297 bits (521), Expect = 4.183e-57
Identity = 109/241 (45.23%), Postives = 151/241 (62.66%), Query Frame = 0
Query:    1 MAALDCEMCLTTEGMEVTRLTLVDEKGEVLLDSFVKPYHDIRDHLTKYSGITPEIIAGCETRLEQVQVALLRLVRADTILVGHSLEQDLMVTGLIHLRCVDTAMLYAHPRGPRLRFALRVLAKRYLQRVIQDSAQGHCSREDAVAALDLVKLKVERGPDFGVEEGFSGGEETRGRESFLERLGGKHGKRCTLLDQSDTLVRIVRGSTASAVVCRSNEEVLSKAKAQARQVLPPHFLWASFA 241
            M ALDCEMC+T EG E+TR+TLVD KG+VL+D  VKP + I D+ T++SGITPE++ G  T L  +Q   L+ V  +TILVGHSLE DL+   + H   +DTA+LY HPRG   + ALR LAK++L R IQ S  GH S EDA A L+L  LK+  GPDFG    F+       R+ FL  L  + GK  +L+D   ++V+     +++A+   S++E L+K K + +     HF+W  F+
Sbjct:  127 MLALDCEMCITNEGFELTRITLVDIKGQVLIDRLVKPSNAIIDYNTRFSGITPEMLNGVTTSLRDIQELFLKFVYEETILVGHSLENDLLALKISHELIIDTAVLYRHPRGTSHKKALRFLAKKFLAREIQQSTNGHDSIEDARATLELALLKIRNGPDFGSPPSFT-------RKKFLSIL-SESGKTSSLIDDI-SIVKRYASESSNAIPVISDDEALAKTKKEVKND-KVHFIWTQFS 357          
BLAST of EWM23992.1 vs. NCBI_GenBank
Match: gi|1044587904|ref|XP_017431138.1| (PREDICTED: small RNA degrading nuclease 5 isoform X1 [Vigna angularis])

HSP 1 Score: 205.297 bits (521), Expect = 4.751e-57
Identity = 109/241 (45.23%), Postives = 151/241 (62.66%), Query Frame = 0
Query:    1 MAALDCEMCLTTEGMEVTRLTLVDEKGEVLLDSFVKPYHDIRDHLTKYSGITPEIIAGCETRLEQVQVALLRLVRADTILVGHSLEQDLMVTGLIHLRCVDTAMLYAHPRGPRLRFALRVLAKRYLQRVIQDSAQGHCSREDAVAALDLVKLKVERGPDFGVEEGFSGGEETRGRESFLERLGGKHGKRCTLLDQSDTLVRIVRGSTASAVVCRSNEEVLSKAKAQARQVLPPHFLWASFA 241
            M ALDCEMC+T EG E+TR+TLVD KG+VL+D  VKP + I D+ T++SGITPE++ G  T L  +Q   L+ V  +TILVGHSLE DL+   + H   +DTA+LY HPRG   + ALR LAK++L R IQ S  GH S EDA A L+L  LK+  GPDFG    F+       R+ FL  L  + GK  +L+D   ++V+     +++A+   S++E L+K K + +     HF+W  F+
Sbjct:  128 MLALDCEMCITNEGFELTRITLVDIKGQVLIDRLVKPSNAIIDYNTRFSGITPEMLNGVTTSLRDIQELFLKFVYEETILVGHSLENDLLALKISHELIIDTAVLYRHPRGTSHKKALRFLAKKFLAREIQQSTNGHDSIEDARATLELALLKIRNGPDFGSPPSFT-------RKKFLSIL-SESGKTSSLIDDI-SIVKRYASESSNAIPVISDDEALAKTKKEVKND-KVHFIWTQFS 358          
BLAST of EWM23992.1 vs. NCBI_GenBank
Match: gi|1063521444|ref|XP_007019342.2| (PREDICTED: small RNA degrading nuclease 5 [Theobroma cacao])

HSP 1 Score: 206.068 bits (523), Expect = 1.197e-56
Identity = 111/241 (46.06%), Postives = 152/241 (63.07%), Query Frame = 0
Query:    1 MAALDCEMCLTTEGMEVTRLTLVDEKGEVLLDSFVKPYHDIRDHLTKYSGITPEIIAGCETRLEQVQVALLRLVRADTILVGHSLEQDLMVTGLIHLRCVDTAMLYAHPRGPRLRFALRVLAKRYLQRVIQDSAQGHCSREDAVAALDLVKLKVERGPDFGVEEGFSGGEETRGRESFLERLGGKHGKRCTLLDQSDTLVRIVRGSTASAVVCRSNEEVLSKAKAQARQVLPPHFLWASFA 241
            + ALDCEMC+T+EG E+TR+TLVD KG+V+LD  VKP + I D+ T+YSGIT E+++G  T L+ VQ   L+LV  DTIL+GHSLE DL+   + H   +DT++LY HPRG   + ALRVLAKR+L   IQ S  GH S EDA AA++L  LK++ GPDFG    F        R+  L  L G+ GK  + +D    + R    S+ +  VC S++E L KA+ + +     HF+W  F+
Sbjct:  210 ILALDCEMCITSEGFELTRVTLVDIKGQVVLDKLVKPSNPITDYNTRYSGITYEMLSGVTTSLQDVQEDFLKLVYKDTILIGHSLENDLLALKISHDLVIDTSVLYKHPRGGSYKTALRVLAKRFLSSEIQQSGNGHDSIEDARAAMELALLKIKNGPDFGSPPSFM-------RKKLLSLL-GECGKTSSFIDDISIVKRYASESSHAIPVC-SDDEALLKARKEVKND-RVHFVWTHFS 440          
BLAST of EWM23992.1 vs. NCBI_GenBank
Match: gi|823165100|ref|XP_012482489.1| (PREDICTED: small RNA degrading nuclease 5 [Gossypium raimondii] >gi|763761832|gb|KJB29086.1| hypothetical protein B456_005G083600 [Gossypium raimondii])

HSP 1 Score: 206.068 bits (523), Expect = 1.400e-56
Identity = 113/241 (46.89%), Postives = 149/241 (61.83%), Query Frame = 0
Query:    1 MAALDCEMCLTTEGMEVTRLTLVDEKGEVLLDSFVKPYHDIRDHLTKYSGITPEIIAGCETRLEQVQVALLRLVRADTILVGHSLEQDLMVTGLIHLRCVDTAMLYAHPRGPRLRFALRVLAKRYLQRVIQDSAQGHCSREDAVAALDLVKLKVERGPDFGVEEGFSGGEETRGRESFLERLGGKHGKRCTLLDQSDTLVRIVRGSTASAVVCRSNEEVLSKAKAQARQVLPPHFLWASFA 241
            M ALDCEMC+T+EG E+TR+TLVD KG+V+LD  V P + I D+ T++SGIT E+++G  T L+ VQ   L LV  DTILVGHSLE DL+   + H   +DT++LY HPRG   + ALRVLAKR+L R IQ S  GH S EDA AA+DL  LK+  GPDFG    F        R   L  L G+ GK  + +D    + R    S+ +  VC S++E L KA+ + +     HF+W  F+
Sbjct:  209 MLALDCEMCITSEGFELTRVTLVDIKGQVVLDKLVNPSNPITDYNTRFSGITYEMLSGVTTTLQNVQEDFLMLVHKDTILVGHSLENDLLALKISHDLIIDTSVLYKHPRGGSYKSALRVLAKRFLSREIQQSGSGHDSIEDARAAMDLALLKIRNGPDFGSPPSFM-------RRKLLTLL-GECGKTSSFIDDISIVKRYASESSHAIPVC-SDDEALLKARKEVKNDR-VHFVWTQFS 439          
The following BLAST results are available for this feature:
BLAST of EWM23992.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585105278|gb|EWM23992.1|0.000e+0100.00small rna degrading nuclease 5 [Nannochloropsis ga... [more]
gi|635370002|emb|CCI41823.1|2.592e-6246.19unnamed protein product [Albugo candida][more]
gi|325191341|emb|CCA26123.1|4.270e-5944.07exonuclease putative [Albugo laibachii Nc14][more]
gi|971510221|dbj|GAQ87994.1|7.623e-5948.55Exonuclease family protein [Klebsormidium nitens][more]
gi|661884435|emb|CDP11992.1|4.833e-5845.64unnamed protein product [Coffea canephora][more]
gi|720046068|ref|XP_010270386.1|2.856e-5745.64PREDICTED: small RNA degrading nuclease 5 isoform ... [more]
gi|1044587906|ref|XP_017431139.1|4.183e-5745.23PREDICTED: small RNA degrading nuclease 5 isoform ... [more]
gi|1044587904|ref|XP_017431138.1|4.751e-5745.23PREDICTED: small RNA degrading nuclease 5 isoform ... [more]
gi|1063521444|ref|XP_007019342.2|1.197e-5646.06PREDICTED: small RNA degrading nuclease 5 [Theobro... [more]
gi|823165100|ref|XP_012482489.1|1.400e-5646.89PREDICTED: small RNA degrading nuclease 5 [Gossypi... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6717rna6717Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications