rna6715, rna6715 (mRNA) Nannochloropsis gaditana

Overview
Namerna6715
Unique Namerna6715
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length873
Alignment locationCM002469.1:325183..326409 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100027g21.145.mrna
Orig protein idgnl|cribi|Naga_100027g21.145
GbkeymRNA
Noteencoded by transcript variant 2; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002469.1supercontigCM002469.1:325183..326409 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100027g21gene6492Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna6715rna6715-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM23967.1cds6699Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna6715 ID=rna6715|Name=rna6715|organism=Nannochloropsis gaditana|type=mRNA|length=873bp
GTGCCGAGGAGGGGAAAACCTGGAGAAAATTTTGATGTCGGTGGGATGGA
TGAGAGAGAGAGGGCTGATTATTCACTGAGGAGGAAGAGGTCATTTTTGG
GAAGTAGTACTCCAGGAGACCCAAAAACGCATGGACGCTTCGGCCTGCCT
GGTTTCCCGTTCCAACCCTCAGAATTGAGTCAAACTTCCCGTTGCATGCG
CCGCAGTGTGGCATGATTGTAAATGGAAGGACTTGGCTGTGGACGGCCTG
AGGCTGTCTCCACGTCGGCTTCAGTCAGGGAGCGACGAACTCTAAACCAG
GCCCGGCCACACCCCTACTTCCAAGCACCGCATTCCCCGCACTCAAAACG
ATTCATCGTCGGCAATCAATTGCAACGTGTTCCTATACTTCACTTGTGTA
CGGCCATATCAGAGTGGGCTCGTCGAGTGCCATCTCCCAGACTGACTTCG
TACTTCTTTTCCCTCTCCTTCAAACAAAGCGACGCGATTCCCTTTTCCGC
AACTATGGCAACCACTGAGCCTAAGGTTGCTGCCAAGGATGACGCGGCTC
CATTGCTGGATGTTCTTGAGGAAGACGACGAATTTGAGGAATTTGCGGAT
CCAGATTGGGACGCGGTTGTTGACGAGGCGCAAGACGAGCAGCAGTGGCA
GGACGATTGGGATGACGATAAAGCGGACGACGAGTTCTCCAAGCATCTGC
GTCAAGAACTCGAGAAACATGGAGGCTGATTCGGGAGTTGGCTTGGCGTT
GCGGGGAGCCCGTACCAGGGACCACAGGAGCTCGCGGGCGATGTCTGCCC
GCATGGCTGCAGTTGACTTAAGCTTGTTCCATACAAAGAAAAAATAAGCA
AAAATGACATATGAGTCTCGACT
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protein sequence of rna6715

>rna6715-protein ID=rna6715-protein|Name=rna6715|organism=Nannochloropsis gaditana|type=polypeptide|length=171bp
MEGLGCGRPEAVSTSASVRERRTLNQARPHPYFQAPHSPHSKRFIVGNQL
QRVPILHLCTAISEWARRVPSPRLTSYFFSLSFKQSDAIPFSATMATTEP
KVAAKDDAAPLLDVLEEDDEFEEFADPDWDAVVDEAQDEQQWQVSLFRFS
LRQGARVTVPALSESDTLSSQ
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mRNA from alignment at CM002469.1:325183..326409-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna6715 ID=rna6715|Name=rna6715|organism=Nannochloropsis gaditana|type=mRNA|length=1227bp|location=Sequence derived from alignment at CM002469.1:325183..326409- (Nannochloropsis gaditana)
GTGCCGAGGAGGGGAAAACCTGGAGAAAATTTTGATGTCGGTGGGATGGA
TGAGAGAGAGAGGGCTGATTATTCACTGAGGAGGAAGAGGTCATTTTTGG
GAAGTAGTACTCCAGGAGACCCAAAAACGCATGGACGCTTCGGCCTGCCT
GGTTTCCCGTTCCAACCCTCAGAATTGAGTCAAACTTCCCGTTGCATGCG
CCGCAGTGTGGCATGATTGTAAATGGAAGGACTTGGCTGTGGACGGCCTG
AGGCTGTCTCCACGTCGGCTTCAGTCAGGGAGCGACGAACTCTAAACCAG
GCCCGGCCACACCCCTACTTCCAAGCACCGCATTCCCCGCACTCAAAACG
ATTCATCGTCGGCAATCAATTGCAACGTGTTCCTATACTTCACTTGTGTA
CGGCCATATCAGAGTGGGCTCGTCGAGTGCCATCTCCCAGACTGACTTCG
TACTTCTTTTCCCTCTCCTTCAAACAAAGCGACGCGATTCCCTTTTCCGC
AACTATGGCAACCACTGAGCCTAAGGTTGCTGCCAAGGATGACGCGGCTC
CATTGCTGGATGTTCTTGAGGAAGACGACGAATTTGAGGTACGGGAGGGA
CGGAATGGGTGAAGGGGTGCCTCAAGAGGGCCTCCACTACGGGTTGATCC
CCGCGGGCGGCCCGAACACTTTCTCCCTCCTCTTGATTGATTTGAGATTT
GTCTTGTGGACAGGAATTTGCGGATCCAGATTGGGACGCGGTTGTTGACG
AGGCGCAAGACGAGCAGCAGTGGCAGGTAAGCTTATTCCGATTCAGCCTT
CGGCAAGGTGCACGTGTGACGGTGCCTGCGCTATCCGAATCAGATACCTT
GTCGAGTCAATGAAAGTCTAGCGTTCTGAGACGAATGCAAGCGTGGGCTT
CGACGTTCTCACTCCGGGGATGTCGAGGGCATCGATGGCCCTTTTGATCC
AGGCATGTTCTTCACGCCGTCTCTCCCACATCGATTGAACGCATGCGCGG
GACAGGACGATTGGGATGACGATAAAGCGGACGACGAGTTCTCCAAGCAT
CTGCGTCAAGAACTCGAGAAACATGGAGGCTGATTCGGGAGTTGGCTTGG
CGTTGCGGGGAGCCCGTACCAGGGACCACAGGAGCTCGCGGGCGATGTCT
GCCCGCATGGCTGCAGTTGACTTAAGCTTGTTCCATACAAAGAAAAAATA
AGCAAAAATGACATATGAGTCTCGACT
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Coding sequence (CDS) from alignment at CM002469.1:325183..326409-

>rna6715 ID=rna6715|Name=rna6715|organism=Nannochloropsis gaditana|type=CDS|length=1032bp|location=Sequence derived from alignment at CM002469.1:325183..326409- (Nannochloropsis gaditana)
GAATTTGCGGATCCAGATTGGGACGCGGTTGTTGACGAGGCGCAAGACGA
GCAGCAGTGGCAGGTAAGCTTATTCCGATTCAGCCTTCGGCAAGGTGCAC
GTGTGACGGTGCCTGCGCTATCCGAATCAGATACCTTGTCGAGTCAATGA
ATGGAAGGACTTGGCTGTGGACGGCCTGAGGCTGTCTCCACGTCGGCTTC
AGTCAGGGAGCGACGAACTCTAAACCAGGCCCGGCCACACCCCTACTTCC
AAGCACCGCATTCCCCGCACTCAAAACGATTCATCGTCGGCAATCAATTG
CAACGTGTTCCTATACTTCACTTGTGTACGGCCATATCAGAGTGGGCTCG
TCGAGTGCCATCTCCCAGACTGACTTCGTACTTCTTTTCCCTCTCCTTCA
AACAAAGCGACGCGATTCCCTTTTCCGCAACTATGGCAACCACTGAGCCT
AAGGTTGCTGCCAAGGATGACGCGGCTCCATTGCTGGATGTTCTTGAGGA
AGACGACGAATTTGAGGAATTTGCGGATCCAGATTGGGACGCGGTTGTTG
ACGAGGCGCAAGACGAGCAGCAGTGGCAGGTAAGCTTATTCCGATTCAGC
CTTCGGCAAGGTGCACGTGTGACGGTGCCTGCGCTATCCGAATCAGATAC
CTTGTCGAGTCAATGAATGGAAGGACTTGGCTGTGGACGGCCTGAGGCTG
TCTCCACGTCGGCTTCAGTCAGGGAGCGACGAACTCTAAACCAGGCCCGG
CCACACCCCTACTTCCAAGCACCGCATTCCCCGCACTCAAAACGATTCAT
CGTCGGCAATCAATTGCAACGTGTTCCTATACTTCACTTGTGTACGGCCA
TATCAGAGTGGGCTCGTCGAGTGCCATCTCCCAGACTGACTTCGTACTTC
TTTTCCCTCTCCTTCAAACAAAGCGACGCGATTCCCTTTTCCGCAACTAT
GGCAACCACTGAGCCTAAGGTTGCTGCCAAGGATGACGCGGCTCCATTGC
TGGATGTTCTTGAGGAAGACGACGAATTTGAG
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Synonyms
Publications