EWM23967.1, cds6699 (CDS) Nannochloropsis gaditana

Overview
NameEWM23967.1
Unique Namecds6699
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002469.1:325822..326187 -
Alignment locationCM002469.1:325547..325696 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM23967.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100027g21.145.mrna
GbkeyCDS
Noteencoded by transcript variant 2; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002469.1supercontigCM002469.1:325822..326187 -
CM002469.1supercontigCM002469.1:325547..325696 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
Vocabulary: Biological Process
TermDefinition
GO:0006810transport
GO:0016043cellular component organization
GO:0008152metabolic process
Vocabulary: INTERPRO
TermDefinition
IPR007834DSS1_SEM1
Homology
[Close]
BLAST of EWM23967.1 vs. NCBI_GenBank
Match: gi|585105253|gb|EWM23967.1| (hypothetical protein Naga_100027g21 [Nannochloropsis gaditana])

HSP 1 Score: 349.747 bits (896), Expect = 5.139e-122
Identity = 171/171 (100.00%), Postives = 171/171 (100.00%), Query Frame = 0 
Query:    1 MEGLGCGRPEAVSTSASVRERRTLNQARPHPYFQAPHSPHSKRFIVGNQLQRVPILHLCTAISEWARRVPSPRLTSYFFSLSFKQSDAIPFSATMATTEPKVAAKDDAAPLLDVLEEDDEFEEFADPDWDAVVDEAQDEQQWQVSLFRFSLRQGARVTVPALSESDTLSSQ 171
            MEGLGCGRPEAVSTSASVRERRTLNQARPHPYFQAPHSPHSKRFIVGNQLQRVPILHLCTAISEWARRVPSPRLTSYFFSLSFKQSDAIPFSATMATTEPKVAAKDDAAPLLDVLEEDDEFEEFADPDWDAVVDEAQDEQQWQVSLFRFSLRQGARVTVPALSESDTLSSQ
Sbjct:    1 MEGLGCGRPEAVSTSASVRERRTLNQARPHPYFQAPHSPHSKRFIVGNQLQRVPILHLCTAISEWARRVPSPRLTSYFFSLSFKQSDAIPFSATMATTEPKVAAKDDAAPLLDVLEEDDEFEEFADPDWDAVVDEAQDEQQWQVSLFRFSLRQGARVTVPALSESDTLSSQ 171
[Close]
BLAST of EWM23967.1 vs. NCBI_GenBank
Match: gi|585105252|gb|EWM23966.1| (hypothetical protein Naga_100027g21 [Nannochloropsis gaditana])

HSP 1 Score: 297.36 bits (760), Expect = 2.854e-101
Identity = 143/143 (100.00%), Postives = 143/143 (100.00%), Query Frame = 0 
Query:    1 MEGLGCGRPEAVSTSASVRERRTLNQARPHPYFQAPHSPHSKRFIVGNQLQRVPILHLCTAISEWARRVPSPRLTSYFFSLSFKQSDAIPFSATMATTEPKVAAKDDAAPLLDVLEEDDEFEEFADPDWDAVVDEAQDEQQWQ 143
            MEGLGCGRPEAVSTSASVRERRTLNQARPHPYFQAPHSPHSKRFIVGNQLQRVPILHLCTAISEWARRVPSPRLTSYFFSLSFKQSDAIPFSATMATTEPKVAAKDDAAPLLDVLEEDDEFEEFADPDWDAVVDEAQDEQQWQ
Sbjct:    1 MEGLGCGRPEAVSTSASVRERRTLNQARPHPYFQAPHSPHSKRFIVGNQLQRVPILHLCTAISEWARRVPSPRLTSYFFSLSFKQSDAIPFSATMATTEPKVAAKDDAAPLLDVLEEDDEFEEFADPDWDAVVDEAQDEQQWQ 143
The following BLAST results are available for this feature:
BLAST of EWM23967.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 2
Match NameE-valueIdentityDescription
gi|585105253|gb|EWM23967.1|5.139e-122100.00hypothetical protein Naga_100027g21 [Nannochlorops... [more]
gi|585105252|gb|EWM23966.1|2.854e-101100.00hypothetical protein Naga_100027g21 [Nannochlorops... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6715rna6715Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications