rna6713, rna6713 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna6713
Unique Name	rna6713
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	993
Alignment location	CM002469.1:323592..324749 +

Link to JBrowse

Properties


Property Name	Value
Product	chloroplast light harvesting protein isoform 4
Orig transcript id	gnl\|cribi\|Naga_100027g19.135.mrna
Orig protein id	gnl\|cribi\|Naga_100027g19.135
Gene	LHCP5
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002469.1	supercontig	CM002469.1:323592..324749 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
LHCP5	gene6491	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna6713	rna6713-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM23957.1	cds6697	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002469.1:323592..324749+
coding sequence from alignment at CM002469.1:323592..324749+

mRNA sequence

>rna6713 ID=rna6713|Name=rna6713|organism=Nannochloropsis gaditana|type=mRNA|length=993bp
ATGGTCAAGGAGACATCGTATCGGGACGTGCTCCGACGCGCGGAGCACGC
CTTGGAGTTGACCGCGTCATGGAGCGCGCCTCAATTCGCCCTCGTTTTAG
GGGGCGAGCAAGCTGTTCCGTTGGCTGAGCGCACTTTGGCGGAGTACCAG
AACCGCTACCGCTCCTCGCTGCAGGGTGGAGGCGGTGAGGCGCGGCTCTT
GTCTCAACAGTCGTTGTACGTTGGGGCCGCTTTTTTCCTCGCAGCGAAAA
AGCTGAAGATGACGGTGGACAAGAAGCGGCTACTCAACCTAAGCGGCGCT
CAGCCTCATGAACTTTCAGCAGTCTGCGCCTCCATGCAAGAGTTCTGCGC
CGATCTCGTTGGTACGCCTGCAAAAAATCGTCGATCCCTTCTCTCGAGCA
CCGCCCCGACGTCCGACTTGTCCACTGACCGTACACGTGGCACGACCCCC
GCCCACGGGGAAGGGACTGAGGATCATCTCCTCCTTTCAAGTCGCGAGCC
TGCGCCCCCGCTGCGCGGTCTGTCTCTGTCCCGCGAGTCCTCAGCCCATT
CCTCTTCCTCCACCTCCTCACACCTGCCGTTGCTGGGATCCTCGGGCCCG
GCACAGAAGCGGTCCCGTCCTAACGAGGCCAACCCCTGTCCTCGACCCGG
ACATCTTGCAGGAGCCTCGCCTTCACCTCTGGAGCTTTTATCGTCCAGAA
GAGCGGGCAAGGACGAAGCGATTGCTGGCGAGACGCAAACGTGCTTGAAA
AGAAGTACTTCAGCTTCACATCGGGCTCTTTCCTCCACTAGTGCGGGGCC
GGAGGCAAACTCCTCTCTAGCGACAGACATGCTCCGGTTTCGAAACGAGC
AGGATAAGGCAAAATATGAGGAATGGAAGGTTTCTGTGCGCGCGGCCGCT
GCGAATAAAGAGCGTAAAAACGTAAAGGATGTCACGATGAAGAACGAAAT
GAAAGAGAGCATGGGAACTGCAGTAGGAAGTGCTGTGGCATGA

protein sequence of rna6713

>rna6713-protein ID=rna6713-protein|Name=rna6713|organism=Nannochloropsis gaditana|type=polypeptide|length=219bp
MRTTACLLAGLGLTQAFLAPTLPSARSFSRTAVTMKLGSSAQGLAGSDIE
FPEFDPLGFTNNPKPETLDWYRAAELKHGRVAMLAALGQIVQHFYTLPDA
SGVFSAGDRPIEALNKVVAERPLAAIQIGLAIFAVEALGQFNQAKPGQAP
GDLGWDPLNLKSDDPEIYAKVQNRELKNGRLAMIAIAGMLVQENLTGLGV
IEQWVKGDINPFGDGRGFF

mRNA from alignment at CM002469.1:323592..324749+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna6713 ID=rna6713|Name=rna6713|organism=Nannochloropsis gaditana|type=mRNA|length=1158bp|location=Sequence derived from alignment at CM002469.1:323592..324749+ (Nannochloropsis gaditana)
ATGCGCACCACCGCTTGCTTGCTCGCCGGTCTGGGCCTCACCCAGGCTTT
TCTggcccccaccctccccagcGCCCGCTCGTTCAGCCGCACGTAAGTAC
CTGCAATGCGAATGCCCCTTCAGTGTCATTAATTGTCTGGCTGTCCGCAG
AGGGTGGCATTCTCGTGGAAGATGGGCAATCTGTCTCGATGCTTCAGTCG
CTCTTACCATGGCTCTCCTAACTTCTCTACCGCGTCTCATTATCTTTTTG
CACCCTGTGCGGCCCACCCCAGCGCCGTGACCATGAAGTTGGGCTCCTCT
GCACAGGGCCTAGCCGGAAGCGACATCGAGTTCCCCGAGTTCGACCCCCT
GGTGAGACATGCACCTCGAACAGCCTCGCGCGACCGCCCCTtccgtcgcc
cccccccctaaagttccctctcctcgcaccCCGATCATTCAGGGATTCAC
CAACAACCCAAAGCCCGAGACATTGGACTGGTACCGTGCCGCTGAGCTCA
AGCACGGGCGCGTTGCCATGTTGGCGGCCCTGGGTCAGATCGTGCAGCAC
TTCTACACCCTCCCCGACGCGTCCGGCGTCTTCTCCGCGGGAGACCGGCC
CATCGAGGCCCTGAACAAGGTGGTGGCAGAGCGGCCCTTGGCAGCCATTC
AGATCGGCCTGGCCATCTTTgcggtggaggcgctggggcAGTTCAACCAG
GCCAAGCCCGGGCAGGCCCCCGGGGATCTGGGCTGGGACCCTCTGAACTT
GAAGAGCGACGACCCCGAGATCTACGCTAAGGTCCAGAACCGCGAGCTCA
AGAACGGGCGCCTTGCTATGGTGCGTCTTCTCTCGGAGGTTCTTGGGACG
GGCATGCGACTGTCGGTTAGGTATGCTTTGTCGActcactccttctccct
ctttcccagaTCGCCATCGCCGGCATGTTGGTGCAGGAGAACTTGACGGG
CCTCGGCGTCATCGAGCAGTGGGGTGAGTGAGAGTCTGGAGAGAGGCCGG
ATTGCGAAGGGGTTGTATGAATGGGTCAGTGCCCTAGACCTACAGacaga
tggagggggaacagCGTTCGGGGGGCTCAATGCCTTGGCTTGTTTCCTAC
CACACCCACAGTCAAGGGCGACATCAACCCATTCGGGGACGGACGTGGCT
TCTTCTAG

Coding sequence (CDS) from alignment at CM002469.1:323592..324749+

>rna6713 ID=rna6713|Name=rna6713|organism=Nannochloropsis gaditana|type=CDS|length=3300bp|location=Sequence derived from alignment at CM002469.1:323592..324749+ (Nannochloropsis gaditana)
ATGCGCACCACCGCTTGCTTGCTCGCCGGTCTGGGCCTCACCCAGGCTTT
TCTggcccccaccctccccagcGCCCGCTCGTTCAGCCGCACCGCCGTGA
CCATGAAGTTGGGCTCCTCTGCACAGGGCCTAGCCGGAAGCGACATCGAG
TTCCCCGAGTTCGACCCCCTGGGATTCACCAACAACCCAAAGCCCGAGAC
ATTGGACTGGTACCGTGCCGCTGAGCTCAAGCACGGGCGCGTTGCCATGT
TGGCGGCCCTGGGTCAGATCGTGCAGCACTTCTACACCCTCCCCGACGCG
TCCGGCGTCTTCTCCGCGGGAGACCGGCCCATCGAGGCCCTGAACAAGGT
GGTGGCAGAGCGGCCCTTGGCAGCCATTCAGATCGGCCTGGCCATCTTTg
cggtggaggcgctggggcAGTTCAACCAGGCCAAGCCCGGGCAGGCCCCC
GGGGATCTGGGCTGGGACCCTCTGAACTTGAAGAGCGACGACCCCGAGAT
CTACGCTAAGGTCCAGAACCGCGAGCTCAAGAACGGGCGCCTTGCTATGa
TCGCCATCGCCGGCATGTTGGTGCAGGAGAACTTGACGGGCCTCGGCGTC
ATCGAGCAGTGGGTCAAGGGCGACATCAACCCATTCGGGGACGGACGTGG
CTTCTTCTAGATGCGCACCACCGCTTGCTTGCTCGCCGGTCTGGGCCTCA
CCCAGGCTTTTCTggcccccaccctccccagcGCCCGCTCGTTCAGCCGC
ACCGCCGTGACCATGAAGTTGGGCTCCTCTGCACAGGGCCTAGCCGGAAG
CGACATCGAGTTCCCCGAGTTCGACCCCCTGGGATTCACCAACAACCCAA
AGCCCGAGACATTGGACTGGTACCGTGCCGCTGAGCTCAAGCACGGGCGC
GTTGCCATGTTGGCGGCCCTGGGTCAGATCGTGCAGCACTTCTACACCCT
CCCCGACGCGTCCGGCGTCTTCTCCGCGGGAGACCGGCCCATCGAGGCCC
TGAACAAGGTGGTGGCAGAGCGGCCCTTGGCAGCCATTCAGATCGGCCTG
GCCATCTTTgcggtggaggcgctggggcAGTTCAACCAGGCCAAGCCCGG
GCAGGCCCCCGGGGATCTGGGCTGGGACCCTCTGAACTTGAAGAGCGACG
ACCCCGAGATCTACGCTAAGGTCCAGAACCGCGAGCTCAAGAACGGGCGC
CTTGCTATGaTCGCCATCGCCGGCATGTTGGTGCAGGAGAACTTGACGGG
CCTCGGCGTCATCGAGCAGTGGGTCAAGGGCGACATCAACCCATTCGGGG
ACGGACGTGGCTTCTTCTAGATGCGCACCACCGCTTGCTTGCTCGCCGGT
CTGGGCCTCACCCAGGCTTTTCTggcccccaccctccccagcGCCCGCTC
GTTCAGCCGCACCGCCGTGACCATGAAGTTGGGCTCCTCTGCACAGGGCC
TAGCCGGAAGCGACATCGAGTTCCCCGAGTTCGACCCCCTGGGATTCACC
AACAACCCAAAGCCCGAGACATTGGACTGGTACCGTGCCGCTGAGCTCAA
GCACGGGCGCGTTGCCATGTTGGCGGCCCTGGGTCAGATCGTGCAGCACT
TCTACACCCTCCCCGACGCGTCCGGCGTCTTCTCCGCGGGAGACCGGCCC
ATCGAGGCCCTGAACAAGGTGGTGGCAGAGCGGCCCTTGGCAGCCATTCA
GATCGGCCTGGCCATCTTTgcggtggaggcgctggggcAGTTCAACCAGG
CCAAGCCCGGGCAGGCCCCCGGGGATCTGGGCTGGGACCCTCTGAACTTG
AAGAGCGACGACCCCGAGATCTACGCTAAGGTCCAGAACCGCGAGCTCAA
GAACGGGCGCCTTGCTATGaTCGCCATCGCCGGCATGTTGGTGCAGGAGA
ACTTGACGGGCCTCGGCGTCATCGAGCAGTGGGTCAAGGGCGACATCAAC
CCATTCGGGGACGGACGTGGCTTCTTCTAGATGCGCACCACCGCTTGCTT
GCTCGCCGGTCTGGGCCTCACCCAGGCTTTTCTggcccccaccctcccca
gcGCCCGCTCGTTCAGCCGCACCGCCGTGACCATGAAGTTGGGCTCCTCT
GCACAGGGCCTAGCCGGAAGCGACATCGAGTTCCCCGAGTTCGACCCCCT
GGGATTCACCAACAACCCAAAGCCCGAGACATTGGACTGGTACCGTGCCG
CTGAGCTCAAGCACGGGCGCGTTGCCATGTTGGCGGCCCTGGGTCAGATC
GTGCAGCACTTCTACACCCTCCCCGACGCGTCCGGCGTCTTCTCCGCGGG
AGACCGGCCCATCGAGGCCCTGAACAAGGTGGTGGCAGAGCGGCCCTTGG
CAGCCATTCAGATCGGCCTGGCCATCTTTgcggtggaggcgctggggcAG
TTCAACCAGGCCAAGCCCGGGCAGGCCCCCGGGGATCTGGGCTGGGACCC
TCTGAACTTGAAGAGCGACGACCCCGAGATCTACGCTAAGGTCCAGAACC
GCGAGCTCAAGAACGGGCGCCTTGCTATGaTCGCCATCGCCGGCATGTTG
GTGCAGGAGAACTTGACGGGCCTCGGCGTCATCGAGCAGTGGGTCAAGGG
CGACATCAACCCATTCGGGGACGGACGTGGCTTCTTCTAGATGCGCACCA
CCGCTTGCTTGCTCGCCGGTCTGGGCCTCACCCAGGCTTTTCTggccccc
accctccccagcGCCCGCTCGTTCAGCCGCACCGCCGTGACCATGAAGTT
GGGCTCCTCTGCACAGGGCCTAGCCGGAAGCGACATCGAGTTCCCCGAGT
TCGACCCCCTGGGATTCACCAACAACCCAAAGCCCGAGACATTGGACTGG
TACCGTGCCGCTGAGCTCAAGCACGGGCGCGTTGCCATGTTGGCGGCCCT
GGGTCAGATCGTGCAGCACTTCTACACCCTCCCCGACGCGTCCGGCGTCT
TCTCCGCGGGAGACCGGCCCATCGAGGCCCTGAACAAGGTGGTGGCAGAG
CGGCCCTTGGCAGCCATTCAGATCGGCCTGGCCATCTTTgcggtggaggc
gctggggcAGTTCAACCAGGCCAAGCCCGGGCAGGCCCCCGGGGATCTGG
GCTGGGACCCTCTGAACTTGAAGAGCGACGACCCCGAGATCTACGCTAAG
GTCCAGAACCGCGAGCTCAAGAACGGGCGCCTTGCTATGaTCGCCATCGC
CGGCATGTTGGTGCAGGAGAACTTGACGGGCCTCGGCGTCATCGAGCAGT
GGGTCAAGGGCGACATCAACCCATTCGGGGACGGACGTGGCTTCTTCTAG

Synonyms

Publications