rna6704, rna6704 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna6704
Unique Name	rna6704
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	714
Alignment location	CM002469.1:302713..304796 -

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Properties


Property Name	Value
Product	CCT domain containing protein
Orig transcript id	gnl\|cribi\|Naga_100027g10.130.mrna
Orig protein id	gnl\|cribi\|Naga_100027g10.130
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002469.1	supercontig	CM002469.1:302713..304796 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100027g10	gene6482	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna6704	rna6704-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM23952.1	cds6688	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002469.1:302713..304796-
coding sequence from alignment at CM002469.1:302713..304796-

mRNA sequence

>rna6704 ID=rna6704|Name=rna6704|organism=Nannochloropsis gaditana|type=mRNA|length=714bp
ATGCGTGGCATGGACATAGAGTATCACATTTCCTTGTTGGAGTCTCGAAA
ATATCTGAAGTTTGGAAAAGTCGTTTGCTGGTTTTGGCCGAGCAGGAAGG
CGCGAGGGATCGGAGCCGAGAGGATTGCTGGTAGCGCCCATTCTCGCACC
TATGACGGCTCGCCTCAGGCTTGCAAACGAAAGTCTTTTGCGGGGGTGGG
GTTCGTAGACAGAGGTGACATTATCGAGAGAGAAAGTGCGCAAGCTGGAG
GAAGCTTAATGAAAGGCAGAAACAAAGGGAGTAGGCGACGTCAAAATGTG
AAGAAGCAGGATAAGATGCAGGCAGATACAACGCCATTCAGCCGGATGGA
AGAGGAGAGGCTGAGGAGGAGGGGGAAAGTGCGAGCTGAGCCTCTGCGGA
TTGACGCATGCTTCGATTCAAGATATAGCTACTCTCCGCATTTATTTTTC
GGTGCGTCCCGTTTTCATGCCGAAGACAAGCAGATGCCCGATATCTTGTG
CAGAGAGGAAGGAGTTGCCGTGCGCGTGATGAGCACATCGGCAAATGATC
AGACACGTGTGAGTAGAACTGCGAAGACACAGAAAAATGTCACGAAGAGA
GACCACAATCAAAAATCTATCGACCATGCCGTTGAGGTACTAGCAGAGAG
TGCGATCGAAATCGAGGTGAGAAATGAGATGATACAAGCAAGTGAGGCGG
AGAGCCTGGGCTAG

protein sequence of rna6704

>rna6704-protein ID=rna6704-protein|Name=rna6704|organism=Nannochloropsis gaditana|type=polypeptide|length=575bp
MSAVAMSAQNRSKIGSGQDTLDGEFLGLSHSPPQFTPSSYEASHMQKRIR
SGSISGRLRSASELEEKGLIDRMQKGVLKNLIMSGDEHLLPVLDKFREEG
DTSELRSLLKSGVLEGRPSLDLELLMDDLDMNFLQLSSGVMGMGGALGGD
GEHCQFDMDDMASLIAGDQAGQGSVGAGSFMEEELLSSMVGVLGRSMSPS
HSASFGLSPFAEESGSGGLPAFLVAVKDEAPPTLVGEGGKGAPVMRGKAA
AASGAARNNKPPSGPPSASAASSTLQQASLSVGVPPPRGSRRGSHPGSRP
SAAAAAASVGAALASKTGGPGASKAESQADSGPSAGSKSNGRASPAVSAL
ASDALGPQSQPGAINPSEASEKAAAAAAASSLMPVLQGNSPHSSPTGSIN
ISTGAGGAEEKRDANKHYIGAYSPESRRLRLEKFWEKKKNRIWDRKVKYD
VRKNFADSRVRVKGRFVKKEDEAILIEVNTLTSREGAMTPGGGQENSSCL
ASGTAPSDSLATEGLHMGVGEGAILPGRGRKGSSSDLLPGLLLGKDELVL
GGHEEDGIAVGVEELEDLLAPLDGL

mRNA from alignment at CM002469.1:302713..304796-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna6704 ID=rna6704|Name=rna6704|organism=Nannochloropsis gaditana|type=mRNA|length=2084bp|location=Sequence derived from alignment at CM002469.1:302713..304796- (Nannochloropsis gaditana)
ATGTCGGCCGTGGCCATGTCGGCACAAAACAGAAGCAAGATAGGGTCTGG
GCAGGACACGTTGGACGGAGAATTTCTGGGTCTGAGCCACTCTCCACCGC
AGTTCACGCCCTCCAGCTACGAGGCATCGCATATGCAAAAGGTAAGAAAT
GAGGCGTGAGGAGACACGGCTTGCAGTTTTTTGGGCTTGTCCTCGGCACC
CTTTCAATACGATATTATCGGCATGCCATATTTGTGCCCGTTCTGCTGTT
CATAATGTGTCGTAGGGTGGGAAATTGAACGAAAAAATTCTTTTGAAATG
TGCCTGTGATATAGAAGTCTCCGATGGTCGTTTGCGAGGCCTTTTTTTCG
TGTCCAGGAAGAGCGCTGGTCTTCCATTGCGGATACTAAATGTCCACGGG
CTTTTGGGAGGAGCAGGCACTCGAGCAGGATCTCTCATCTTATCATGCGC
TCACCTCGCCTCTTCCTGCTATACCCATAATTCCTCCCGCCGCTCAGCGC
ATCCGCTCTGGCAGCATCTCGGGCCGCCTCCGAAGCGCCTCCGAGCTGGA
GGAGAAGGGCCTGATTGACCGGATGCAGAAAGGGGTACTGAAAAACCTCA
TCATGTCCGGAGACGAGCACTTGCTCCCGGTTTTGGATAAATTCAGAGAG
GAGGGCGACACCTCGGAGCTGCGTTCCCTGTTGAAGAGCGGCGTGCTGGA
GGGGCGGCCGAGCCTGGACCTTGAGCTCTTGATGGACGACCTGGACATGA
ACTTCCTGCAGCTCAGCAGCGGGGTGATGGGAATGGGCGGGGCTCTGGGG
GGGGACGGCGAGCATTGTCAGTTCGACATGGACGACATGGCCTCCCTGAT
CGCGGGCGACCAGGCGGGACAGGGCTCGGTGGGGGCGGGATCCTTCATGG
AGGAGGAGCTGCTCTCGAGCATGGTGGGCGTGCTGGGACGGTCCATGAGC
CCCAGTCACAGCGCCTCCTTTGGCCTCTCTCCCTTTGCCGAGGAGAGCGG
TTCAGGAGGGCTGCCCGCCTTCCTGGTCGCGGTGAAAGACGAGGCCCCAC
CAACTCTGGTAGGGGAGGGAGGGAAGGGGGCGCCGGTCATGAGGGGGAAG
GCGGCAGCGGCCTCAGGGGCGGCGCGCAACAACAAACCGCCATCGGGTCC
GCCCTCTGCGTCCGCCGCCTCCTCCACTTTGCAGCAGGCATCACTTTCGG
TCGGCGTCCCCCCTCCTAGGGGTTCGCGGAGGGGCAGCCACCCGGGCAGC
AGGCCCTCGGCTGCGGCTGCGGCTGCCAGCGTCGGCGCCGCGCTGGCCAG
CAAGACCGGAGGGCCTGGTGCTTCAAAAGCAGAGTCTCAGGCAGATTCCG
GCCCGAGCGCCGGGAGTAAAAGCAACGGAAGGGCCTCGCCCGCGGTCTCG
GCTTTGGCCAGTGACGCCTTGGGGCCACAGTCCCAGCCGGGCGCCATCAA
TCCCTCTGAGGCGTCGGAAAAGGCAGCTGCAGCGGCAGCTGCCTCTTCTC
TAATGCCCGTGCTTCAAGGTAACTCTCCCCATTCGAGTCCCACCGGCAGC
ATCAACATCAGCACGGGAGCGGGAGGCGCGGAGGAGAAGCGCGATGCGAA
CAAGCACTATATTGGCGCGTATTCGCCCGAGTCGCGTCGTTTGCGCTTGG
AGAAATTCTGGGAGAAGAAGAAAAATCGGATCTGGGACCGGAAGGTGAAG
TACGACGTGCGCAAGAATTTTGCGGACTCTCGCGTCCGTGTGAAGGGACG
GTTCGTGAAGAAGGAGGATGAGGCGATCCTGATCGAGGTGAACACCTTGA
CGAGCAGGGAGGGGGCGATGACACCGGGAGGGGGACAGGAAAATTCCTCA
TGCCTCGCCTCGGGGACGGCGCCCTCCGACTCCCTGGCGACCGAGGGATT
GCACATGGGCGTAGGGGAGGGCGCGATTCTGCCGGGTAGAGGCAGGAAGG
GAAGCAGCAGCGATCTGCTGCCGGGCTTGTTGCTGGGAAAGGATGAACTG
GTGCTGGGGGGGCACGAAGAAGACGGGATCGCGGTAGGTGTGGAGGAATT
GGAAGACCTACTGGCTCCTTTGGATGGGTTGTAA

Coding sequence (CDS) from alignment at CM002469.1:302713..304796-

>rna6704 ID=rna6704|Name=rna6704|organism=Nannochloropsis gaditana|type=CDS|length=3456bp|location=Sequence derived from alignment at CM002469.1:302713..304796- (Nannochloropsis gaditana)
CGCATCCGCTCTGGCAGCATCTCGGGCCGCCTCCGAAGCGCCTCCGAGCT
GGAGGAGAAGGGCCTGATTGACCGGATGCAGAAAGGGGTACTGAAAAACC
TCATCATGTCCGGAGACGAGCACTTGCTCCCGGTTTTGGATAAATTCAGA
GAGGAGGGCGACACCTCGGAGCTGCGTTCCCTGTTGAAGAGCGGCGTGCT
GGAGGGGCGGCCGAGCCTGGACCTTGAGCTCTTGATGGACGACCTGGACA
TGAACTTCCTGCAGCTCAGCAGCGGGGTGATGGGAATGGGCGGGGCTCTG
GGGGGGGACGGCGAGCATTGTCAGTTCGACATGGACGACATGGCCTCCCT
GATCGCGGGCGACCAGGCGGGACAGGGCTCGGTGGGGGCGGGATCCTTCA
TGGAGGAGGAGCTGCTCTCGAGCATGGTGGGCGTGCTGGGACGGTCCATG
AGCCCCAGTCACAGCGCCTCCTTTGGCCTCTCTCCCTTTGCCGAGGAGAG
CGGTTCAGGAGGGCTGCCCGCCTTCCTGGTCGCGGTGAAAGACGAGGCCC
CACCAACTCTGGTAGGGGAGGGAGGGAAGGGGGCGCCGGTCATGAGGGGG
AAGGCGGCAGCGGCCTCAGGGGCGGCGCGCAACAACAAACCGCCATCGGG
TCCGCCCTCTGCGTCCGCCGCCTCCTCCACTTTGCAGCAGGCATCACTTT
CGGTCGGCGTCCCCCCTCCTAGGGGTTCGCGGAGGGGCAGCCACCCGGGC
AGCAGGCCCTCGGCTGCGGCTGCGGCTGCCAGCGTCGGCGCCGCGCTGGC
CAGCAAGACCGGAGGGCCTGGTGCTTCAAAAGCAGAGTCTCAGGCAGATT
CCGGCCCGAGCGCCGGGAGTAAAAGCAACGGAAGGGCCTCGCCCGCGGTC
TCGGCTTTGGCCAGTGACGCCTTGGGGCCACAGTCCCAGCCGGGCGCCAT
CAATCCCTCTGAGGCGTCGGAAAAGGCAGCTGCAGCGGCAGCTGCCTCTT
CTCTAATGCCCGTGCTTCAAGGTAACTCTCCCCATTCGAGTCCCACCGGC
AGCATCAACATCAGCACGGGAGCGGGAGGCGCGGAGGAGAAGCGCGATGC
GAACAAGCACTATATTGGCGCGTATTCGCCCGAGTCGCGTCGTTTGCGCT
TGGAGAAATTCTGGGAGAAGAAGAAAAATCGGATCTGGGACCGGAAGGTG
AAGTACGACGTGCGCAAGAATTTTGCGGACTCTCGCGTCCGTGTGAAGGG
ACGGTTCGTGAAGAAGGAGGATGAGGCGATCCTGATCGAGGTGAACACCT
TGACGAGCAGGGAGGGGGCGATGACACCGGGAGGGGGACAGGAAAATTCC
TCATGCCTCGCCTCGGGGACGGCGCCCTCCGACTCCCTGGCGACCGAGGG
ATTGCACATGGGCGTAGGGGAGGGCGCGATTCTGCCGGGTAGAGGCAGGA
AGGGAAGCAGCAGCGATCTGCTGCCGGGCTTGTTGCTGGGAAAGGATGAA
CTGGTGCTGGGGGGGCACGAAGAAGACGGGATCGCGGTAGGTGTGGAGGA
ATTGGAAGACCTACTGGCTCCTTTGGATGGGTTGTAAATGTCGGCCGTGG
CCATGTCGGCACAAAACAGAAGCAAGATAGGGTCTGGGCAGGACACGTTG
GACGGAGAATTTCTGGGTCTGAGCCACTCTCCACCGCAGTTCACGCCCTC
CAGCTACGAGGCATCGCATATGCAAAAGCGCATCCGCTCTGGCAGCATCT
CGGGCCGCCTCCGAAGCGCCTCCGAGCTGGAGGAGAAGGGCCTGATTGAC
CGGATGCAGAAAGGGGTACTGAAAAACCTCATCATGTCCGGAGACGAGCA
CTTGCTCCCGGTTTTGGATAAATTCAGAGAGGAGGGCGACACCTCGGAGC
TGCGTTCCCTGTTGAAGAGCGGCGTGCTGGAGGGGCGGCCGAGCCTGGAC
CTTGAGCTCTTGATGGACGACCTGGACATGAACTTCCTGCAGCTCAGCAG
CGGGGTGATGGGAATGGGCGGGGCTCTGGGGGGGGACGGCGAGCATTGTC
AGTTCGACATGGACGACATGGCCTCCCTGATCGCGGGCGACCAGGCGGGA
CAGGGCTCGGTGGGGGCGGGATCCTTCATGGAGGAGGAGCTGCTCTCGAG
CATGGTGGGCGTGCTGGGACGGTCCATGAGCCCCAGTCACAGCGCCTCCT
TTGGCCTCTCTCCCTTTGCCGAGGAGAGCGGTTCAGGAGGGCTGCCCGCC
TTCCTGGTCGCGGTGAAAGACGAGGCCCCACCAACTCTGGTAGGGGAGGG
AGGGAAGGGGGCGCCGGTCATGAGGGGGAAGGCGGCAGCGGCCTCAGGGG
CGGCGCGCAACAACAAACCGCCATCGGGTCCGCCCTCTGCGTCCGCCGCC
TCCTCCACTTTGCAGCAGGCATCACTTTCGGTCGGCGTCCCCCCTCCTAG
GGGTTCGCGGAGGGGCAGCCACCCGGGCAGCAGGCCCTCGGCTGCGGCTG
CGGCTGCCAGCGTCGGCGCCGCGCTGGCCAGCAAGACCGGAGGGCCTGGT
GCTTCAAAAGCAGAGTCTCAGGCAGATTCCGGCCCGAGCGCCGGGAGTAA
AAGCAACGGAAGGGCCTCGCCCGCGGTCTCGGCTTTGGCCAGTGACGCCT
TGGGGCCACAGTCCCAGCCGGGCGCCATCAATCCCTCTGAGGCGTCGGAA
AAGGCAGCTGCAGCGGCAGCTGCCTCTTCTCTAATGCCCGTGCTTCAAGG
TAACTCTCCCCATTCGAGTCCCACCGGCAGCATCAACATCAGCACGGGAG
CGGGAGGCGCGGAGGAGAAGCGCGATGCGAACAAGCACTATATTGGCGCG
TATTCGCCCGAGTCGCGTCGTTTGCGCTTGGAGAAATTCTGGGAGAAGAA
GAAAAATCGGATCTGGGACCGGAAGGTGAAGTACGACGTGCGCAAGAATT
TTGCGGACTCTCGCGTCCGTGTGAAGGGACGGTTCGTGAAGAAGGAGGAT
GAGGCGATCCTGATCGAGGTGAACACCTTGACGAGCAGGGAGGGGGCGAT
GACACCGGGAGGGGGACAGGAAAATTCCTCATGCCTCGCCTCGGGGACGG
CGCCCTCCGACTCCCTGGCGACCGAGGGATTGCACATGGGCGTAGGGGAG
GGCGCGATTCTGCCGGGTAGAGGCAGGAAGGGAAGCAGCAGCGATCTGCT
GCCGGGCTTGTTGCTGGGAAAGGATGAACTGGTGCTGGGGGGGCACGAAG
AAGACGGGATCGCGGTAGGTGTGGAGGAATTGGAAGACCTACTGGCTCCT
TTGGATGGGTTGTAAATGTCGGCCGTGGCCATGTCGGCACAAAACAGAAG
CAAGATAGGGTCTGGGCAGGACACGTTGGACGGAGAATTTCTGGGTCTGA
GCCACTCTCCACCGCAGTTCACGCCCTCCAGCTACGAGGCATCGCATATG
CAAAAG

Synonyms

Publications