EWM23952.1, cds6688 (CDS) Nannochloropsis gaditana

Overview
NameEWM23952.1
Unique Namecds6688
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002469.1:304656..304796 -
Alignment locationCM002469.1:302713..304299 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM23952.1
ProductCCT domain containing protein
Orig transcript idgnl|cribi|Naga_100027g10.130.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002469.1supercontigCM002469.1:304656..304796 -
CM002469.1supercontigCM002469.1:302713..304299 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR010402CCT_domain
Homology
BLAST of EWM23952.1 vs. NCBI_GenBank
Match: gi|585105238|gb|EWM23952.1| (CCT domain containing protein [Nannochloropsis gaditana])

HSP 1 Score: 1132.86 bits (2929), Expect = 0.000e+0
Identity = 575/575 (100.00%), Postives = 575/575 (100.00%), Query Frame = 0
Query:    1 MSAVAMSAQNRSKIGSGQDTLDGEFLGLSHSPPQFTPSSYEASHMQKRIRSGSISGRLRSASELEEKGLIDRMQKGVLKNLIMSGDEHLLPVLDKFREEGDTSELRSLLKSGVLEGRPSLDLELLMDDLDMNFLQLSSGVMGMGGALGGDGEHCQFDMDDMASLIAGDQAGQGSVGAGSFMEEELLSSMVGVLGRSMSPSHSASFGLSPFAEESGSGGLPAFLVAVKDEAPPTLVGEGGKGAPVMRGKAAAASGAARNNKPPSGPPSASAASSTLQQASLSVGVPPPRGSRRGSHPGSRPSAAAAAASVGAALASKTGGPGASKAESQADSGPSAGSKSNGRASPAVSALASDALGPQSQPGAINPSEASEKAAAAAAASSLMPVLQGNSPHSSPTGSINISTGAGGAEEKRDANKHYIGAYSPESRRLRLEKFWEKKKNRIWDRKVKYDVRKNFADSRVRVKGRFVKKEDEAILIEVNTLTSREGAMTPGGGQENSSCLASGTAPSDSLATEGLHMGVGEGAILPGRGRKGSSSDLLPGLLLGKDELVLGGHEEDGIAVGVEELEDLLAPLDGL 575
            MSAVAMSAQNRSKIGSGQDTLDGEFLGLSHSPPQFTPSSYEASHMQKRIRSGSISGRLRSASELEEKGLIDRMQKGVLKNLIMSGDEHLLPVLDKFREEGDTSELRSLLKSGVLEGRPSLDLELLMDDLDMNFLQLSSGVMGMGGALGGDGEHCQFDMDDMASLIAGDQAGQGSVGAGSFMEEELLSSMVGVLGRSMSPSHSASFGLSPFAEESGSGGLPAFLVAVKDEAPPTLVGEGGKGAPVMRGKAAAASGAARNNKPPSGPPSASAASSTLQQASLSVGVPPPRGSRRGSHPGSRPSAAAAAASVGAALASKTGGPGASKAESQADSGPSAGSKSNGRASPAVSALASDALGPQSQPGAINPSEASEKAAAAAAASSLMPVLQGNSPHSSPTGSINISTGAGGAEEKRDANKHYIGAYSPESRRLRLEKFWEKKKNRIWDRKVKYDVRKNFADSRVRVKGRFVKKEDEAILIEVNTLTSREGAMTPGGGQENSSCLASGTAPSDSLATEGLHMGVGEGAILPGRGRKGSSSDLLPGLLLGKDELVLGGHEEDGIAVGVEELEDLLAPLDGL
Sbjct:    1 MSAVAMSAQNRSKIGSGQDTLDGEFLGLSHSPPQFTPSSYEASHMQKRIRSGSISGRLRSASELEEKGLIDRMQKGVLKNLIMSGDEHLLPVLDKFREEGDTSELRSLLKSGVLEGRPSLDLELLMDDLDMNFLQLSSGVMGMGGALGGDGEHCQFDMDDMASLIAGDQAGQGSVGAGSFMEEELLSSMVGVLGRSMSPSHSASFGLSPFAEESGSGGLPAFLVAVKDEAPPTLVGEGGKGAPVMRGKAAAASGAARNNKPPSGPPSASAASSTLQQASLSVGVPPPRGSRRGSHPGSRPSAAAAAASVGAALASKTGGPGASKAESQADSGPSAGSKSNGRASPAVSALASDALGPQSQPGAINPSEASEKAAAAAAASSLMPVLQGNSPHSSPTGSINISTGAGGAEEKRDANKHYIGAYSPESRRLRLEKFWEKKKNRIWDRKVKYDVRKNFADSRVRVKGRFVKKEDEAILIEVNTLTSREGAMTPGGGQENSSCLASGTAPSDSLATEGLHMGVGEGAILPGRGRKGSSSDLLPGLLLGKDELVLGGHEEDGIAVGVEELEDLLAPLDGL 575          
BLAST of EWM23952.1 vs. NCBI_GenBank
Match: gi|299473410|emb|CBN77808.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 125.561 bits (314), Expect = 1.474e-26
Identity = 65/109 (59.63%), Postives = 84/109 (77.06%), Query Frame = 0
Query:   28 LSHSPPQFTPSSYEASHMQKRIRSGSISGRLRSASELEEKGLIDRMQKGVLKNLIMSGDEHLLPVLDKFREEGDTSELRSLLKSGVLEGRPSLDLELLMDDLDMNFLQL 136
            LSH+PP FTP SYE SHM KR R+GSISGRLRSAS+LEEKGLID+ QKGVLK+LI+SGD  L   LD + + GD S+L +L+++G+L+ R S D   L+D+LD   ++L
Sbjct:   44 LSHTPPNFTPGSYEVSHM-KRARAGSISGRLRSASDLEEKGLIDKSQKGVLKDLIISGDSQLQTALDLY-DNGDASQLEALMENGLLDRRESFD---LLDNLDFGIMEL 147          

HSP 2 Score: 107.457 bits (267), Expect = 1.045e-20
Identity = 43/63 (68.25%), Postives = 56/63 (88.89%), Query Frame = 0
Query:  416 KHYIGAYSPESRRLRLEKFWEKKKNRIWDRKVKYDVRKNFADSRVRVKGRFVKKEDEAILIEV 478
            K ++GAYSPE+RR R+E+F +K++ R+W + VKYDVRKNFAD+R+RVKGRFVKKEDEA+L EV
Sbjct:  649 KKFVGAYSPEARRQRIERFLDKREKRVWTKMVKYDVRKNFADTRMRVKGRFVKKEDEALLREV 711          
BLAST of EWM23952.1 vs. NCBI_GenBank
Match: gi|1032150803|gb|OAO14498.1| (CCT motif containing protein [Blastocystis sp. ATCC 50177/Nand II])

HSP 1 Score: 109.768 bits (273), Expect = 1.379e-23
Identity = 51/87 (58.62%), Postives = 65/87 (74.71%), Query Frame = 0
Query:  395 PTGSINISTGAGGAEEKRDANKHYIGAYSPESRRLRLEKFWEKKKNRIWDRKVKYDVRKNFADSRVRVKGRFVKKEDEAILIEVNTL 481
            P G  +I T A       ++ K YIG YSPESR+ R+++F+EK+K R+W +KVKYDVRKNFADSR+RVKGRFVKKEDE +L E+  L
Sbjct:  157 PPGLTSIDTQA-------ESQKKYIGIYSPESRKKRVQRFFEKRKQRVWTKKVKYDVRKNFADSRLRVKGRFVKKEDEELLRELMNL 236          
BLAST of EWM23952.1 vs. NCBI_GenBank
Match: gi|855303174|ref|XP_012894668.1| (uncharacterized protein [Blastocystis hominis] >gi|300175309|emb|CBK20620.2| unnamed protein product [Blastocystis hominis])

HSP 1 Score: 108.997 bits (271), Expect = 4.872e-23
Identity = 46/70 (65.71%), Postives = 59/70 (84.29%), Query Frame = 0
Query:  413 DANKHYIGAYSPESRRLRLEKFWEKKKNRIWDRKVKYDVRKNFADSRVRVKGRFVKKEDEAILIEVNTLT 482
            +  K YIG YSPE+R+ R+++F+EK+K R+W +KVKYDVRKNFADSR+RVKGRFVKKEDE +L E+  LT
Sbjct:  197 ETQKKYIGMYSPEARKKRVQRFFEKRKQRVWTKKVKYDVRKNFADSRLRVKGRFVKKEDEELLRELMNLT 266          
BLAST of EWM23952.1 vs. NCBI_GenBank
Match: gi|1210524953|dbj|GAX16145.1| (hypothetical protein FisN_3Hh374 [Fistulifera solaris])

HSP 1 Score: 111.694 bits (278), Expect = 1.821e-22
Identity = 63/116 (54.31%), Postives = 82/116 (70.69%), Query Frame = 0
Query:   26 LGLSHSPPQFTPSSYEASHMQKRIRSGSISGRLRSASE-LEEKGLIDRMQKGVLKNLIMSGDEHLLPVLDKFREEGDTSELRSLLKSGVLEGRPSLDLELLMDDLDMNFLQLSSGV 140
            L LSH+PP    SSYE SH  KR R+GS+SGRLRSASE LE KGL+DR  KG+L++LI+ GDE L   +D F E GD S+L  +++SG L+ R   D++LL  DLD +FL +S G+
Sbjct:  114 LPLSHTPPNMA-SSYEVSHFGKRARAGSVSGRLRSASEYLERKGLLDRNTKGILQDLIIIGDEELQSAID-FYEAGDPSKLEEMIQSGALQNRLPNDIDLL-GDLDFDFLTMSDGI 226          

HSP 2 Score: 102.834 bits (255), Expect = 1.865e-19
Identity = 40/65 (61.54%), Postives = 58/65 (89.23%), Query Frame = 0
Query:  418 YIGAYSPESRRLRLEKFWEKKKNRIWDRKVKYDVRKNFADSRVRVKGRFVKKEDEAILIEVNTLT 482
            ++GAYSP+SRR+R+++F +K+ +R+W + VKYDVRKNFA+SR+RVKGRFVKKEDE ++ E+ +LT
Sbjct:  463 WVGAYSPDSRRVRIDRFMQKRNHRVWAKTVKYDVRKNFANSRLRVKGRFVKKEDEVLMRELMSLT 527          
BLAST of EWM23952.1 vs. NCBI_GenBank
Match: gi|673015400|ref|XP_008861661.1| (hypothetical protein H310_00600 [Aphanomyces invadans] >gi|574483259|gb|ETW10250.1| hypothetical protein H310_00600 [Aphanomyces invadans])

HSP 1 Score: 109.383 bits (272), Expect = 2.282e-22
Identity = 50/87 (57.47%), Postives = 68/87 (78.16%), Query Frame = 0
Query:  396 TGSINISTGAGGAEEKRDANKHYIGAYSPESRRLRLEKFWEKKKNRIWDRKVKYDVRKNFADSRVRVKGRFVKKEDEAILIEVNTLT 482
            +G++N S G     EK+ A   ++GAYSP+SRR R+EKF +K++ R+W ++VKYDVRKNFADSR+RVKGRFVKKEDE +L E+ + T
Sbjct:  276 SGTLNTSAGGLSDAEKKAA---FVGAYSPDSRRKRVEKFLDKRQKRVWRKEVKYDVRKNFADSRLRVKGRFVKKEDEQLLRELLSFT 359          

HSP 2 Score: 95.5153 bits (236), Expect = 1.149e-17
Identity = 58/114 (50.88%), Postives = 74/114 (64.91%), Query Frame = 0
Query:    7 SAQNRSKIGSGQDTLDGEFLGLSHSPPQFTPSSYEASHMQKRIRSGSISGRLRSASELEEKGLIDRMQKGVLKNLIMSGDEHLLPVLDKFREEGDTSELRSLLKSGVLEGRPSL 120
            ++  +  IG   D L G    ++H+PP F+P S       KR RSGSISGRL SAS+LEEKG IDR QKGVLK+LI+SGDE L   L+ F E+GD + L +LL SG L  + S+
Sbjct:   33 TSTRKESIGWMSDDLMGM---ITHTPPAFSPGSLTLPST-KRNRSGSISGRLLSASDLEEKGFIDRYQKGVLKDLIISGDEKLQKALETF-EQGDPTALEALLDSGALNRKSSV 141          
BLAST of EWM23952.1 vs. NCBI_GenBank
Match: gi|1210531078|dbj|GAX10179.1| (hypothetical protein FisN_3Lh374 [Fistulifera solaris])

HSP 1 Score: 110.153 bits (274), Expect = 7.468e-22
Identity = 63/116 (54.31%), Postives = 82/116 (70.69%), Query Frame = 0
Query:   26 LGLSHSPPQFTPSSYEASHMQKRIRSGSISGRLRSASE-LEEKGLIDRMQKGVLKNLIMSGDEHLLPVLDKFREEGDTSELRSLLKSGVLEGRPSLDLELLMDDLDMNFLQLSSGV 140
            L LSH+PP    SSYE SH  KR R+GS+SGRLRSASE LE KGL+DR  KG+L++LI+ GDE L   +D F E GD S+L  +++SG L+ R   D++LL  DLD +FL +S G+
Sbjct:  116 LPLSHTPPSMA-SSYEISHFGKRARAGSVSGRLRSASEYLERKGLLDRNTKGILQDLIIIGDEELQSAID-FYEAGDPSKLEEMIQSGALQNRLPNDIDLL-GDLDFDFLTMSDGI 228          

HSP 2 Score: 103.99 bits (258), Expect = 7.676e-20
Identity = 41/65 (63.08%), Postives = 58/65 (89.23%), Query Frame = 0
Query:  418 YIGAYSPESRRLRLEKFWEKKKNRIWDRKVKYDVRKNFADSRVRVKGRFVKKEDEAILIEVNTLT 482
            ++GAYSP+SRR+R+E+F +K+ +R+W + VKYDVRKNFA+SR+RVKGRFVKKEDE ++ E+ +LT
Sbjct:  464 WVGAYSPDSRRVRIERFMQKRNHRVWAKTVKYDVRKNFANSRLRVKGRFVKKEDEVLMRELMSLT 528          
BLAST of EWM23952.1 vs. NCBI_GenBank
Match: gi|698779157|ref|XP_009822622.1| (hypothetical protein H257_01227 [Aphanomyces astaci] >gi|574122283|gb|ETV87759.1| hypothetical protein H257_01227 [Aphanomyces astaci])

HSP 1 Score: 107.457 bits (267), Expect = 8.554e-22
Identity = 50/87 (57.47%), Postives = 68/87 (78.16%), Query Frame = 0
Query:  396 TGSINISTGAGGAEEKRDANKHYIGAYSPESRRLRLEKFWEKKKNRIWDRKVKYDVRKNFADSRVRVKGRFVKKEDEAILIEVNTLT 482
            +G++N  T AGG  +  D    ++GAYSP+SRR R+EKF +K++ R+W ++VKYDVRKNFADSR+RVKGRFVKKEDE +L E+ + T
Sbjct:  272 SGTLN--TTAGGLSDA-DKKAAFVGAYSPDSRRKRVEKFLDKRQKRVWRKEVKYDVRKNFADSRLRVKGRFVKKEDEQLLRELLSFT 355          

HSP 2 Score: 94.7449 bits (234), Expect = 1.570e-17
Identity = 58/114 (50.88%), Postives = 74/114 (64.91%), Query Frame = 0
Query:    7 SAQNRSKIGSGQDTLDGEFLGLSHSPPQFTPSSYEASHMQKRIRSGSISGRLRSASELEEKGLIDRMQKGVLKNLIMSGDEHLLPVLDKFREEGDTSELRSLLKSGVLEGRPSL 120
            ++  +  IG   D L G    ++H+PP F+P S       KR RSGSISGRL SAS+LEEKG IDR QKGVLK+LI+SGDE L   L+ F E+GD + L +LL SG L  + S+
Sbjct:   33 TSARKESIGWMSDDLMGM---ITHTPPAFSPGSLTLPST-KRNRSGSISGRLLSASDLEEKGFIDRYQKGVLKDLIISGDEKLQKALETF-EQGDPTALEALLDSGALNRKSSV 141          
BLAST of EWM23952.1 vs. NCBI_GenBank
Match: gi|950892360|ref|XP_014527847.1| (hypothetical protein JH06_2099 [Blastocystis sp. subtype 4] >gi|902862458|gb|KNB44404.1| hypothetical protein JH06_2099 [Blastocystis sp. subtype 4])

HSP 1 Score: 107.071 bits (266), Expect = 1.310e-21
Identity = 46/80 (57.50%), Postives = 62/80 (77.50%), Query Frame = 0
Query:  402 STGAGGAEEKRDANKHYIGAYSPESRRLRLEKFWEKKKNRIWDRKVKYDVRKNFADSRVRVKGRFVKKEDEAILIEVNTL 481
            S G      + ++ K +IG YSPE+R+ R+++F+EK+K R+W +KVKYDVRKNFADSR+RVKGRFVKKEDE +L E+  L
Sbjct:  282 SVGLSPTSPQLESQKKFIGIYSPEARKKRVQRFFEKRKQRVWTKKVKYDVRKNFADSRLRVKGRFVKKEDEELLRELMNL 361          
BLAST of EWM23952.1 vs. NCBI_GenBank
Match: gi|695451307|ref|XP_009535696.1| (hypothetical protein PHYSODRAFT_288671 [Phytophthora sojae] >gi|348669240|gb|EGZ09063.1| hypothetical protein PHYSODRAFT_288671 [Phytophthora sojae])

HSP 1 Score: 104.76 bits (260), Expect = 1.938e-21
Identity = 47/86 (54.65%), Postives = 66/86 (76.74%), Query Frame = 0
Query:  397 GSINISTGAGGAEEKRDANKHYIGAYSPESRRLRLEKFWEKKKNRIWDRKVKYDVRKNFADSRVRVKGRFVKKEDEAILIEVNTLT 482
            G I+ + G  G ++      +++GAYSP+SRR R+EKF +K++ R+W ++VKYDVRKNFADSR+RVKGRFVKKEDE +L E+ + T
Sbjct:  193 GGIDATKGKDGQKQ------NFVGAYSPDSRRKRIEKFLDKRQKRVWRKEVKYDVRKNFADSRLRVKGRFVKKEDEQLLRELLSFT 272          
The following BLAST results are available for this feature:
BLAST of EWM23952.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585105238|gb|EWM23952.1|0.000e+0100.00CCT domain containing protein [Nannochloropsis gad... [more]
gi|299473410|emb|CBN77808.1|1.474e-2659.63conserved unknown protein [Ectocarpus siliculosus][more]
gi|1032150803|gb|OAO14498.1|1.379e-2358.62CCT motif containing protein [Blastocystis sp. ATC... [more]
gi|855303174|ref|XP_012894668.1|4.872e-2365.71uncharacterized protein [Blastocystis hominis] >gi... [more]
gi|1210524953|dbj|GAX16145.1|1.821e-2254.31hypothetical protein FisN_3Hh374 [Fistulifera sola... [more]
gi|673015400|ref|XP_008861661.1|2.282e-2257.47hypothetical protein H310_00600 [Aphanomyces invad... [more]
gi|1210531078|dbj|GAX10179.1|7.468e-2254.31hypothetical protein FisN_3Lh374 [Fistulifera sola... [more]
gi|698779157|ref|XP_009822622.1|8.554e-2257.47hypothetical protein H257_01227 [Aphanomyces astac... [more]
gi|950892360|ref|XP_014527847.1|1.310e-2157.50hypothetical protein JH06_2099 [Blastocystis sp. s... [more]
gi|695451307|ref|XP_009535696.1|1.938e-2154.65hypothetical protein PHYSODRAFT_288671 [Phytophtho... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6704rna6704Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications