rna6702, rna6702 (mRNA) Nannochloropsis gaditana

Overview
Namerna6702
Unique Namerna6702
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length570
Alignment locationCM002469.1:300708..301324 +

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100027g8.128.mrna
Orig protein idgnl|cribi|Naga_100027g8.128
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002469.1supercontigCM002469.1:300708..301324 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100027g8gene6480Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna6702rna6702-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM23950.1cds6686Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna6702 ID=rna6702|Name=rna6702|organism=Nannochloropsis gaditana|type=mRNA|length=570bp
ATGAACAGTCACATGTGTGTTCTCGATTTTGATGTGCTGATTCTGGATAG
AAGTCCCACGAGGAGATTCACTTCAACTTCATCTGTCCTGCGACGGATCC
GTTCCTCCTCACAAGTAACCGGAGCTGTCAGAAAACCCCTTTTCCAACAC
TTGCGCCAGCATAGAAGCCTCACATCCTCTGTTGAAACGATACCTTATTG
TGACATGGGGGCGGCAATTCTCGTCGCCAACGAGACCACTGTCCTTGACA
CTAGGCCCGCGACATTTTCAGAGCGACTTAGGCTGTCTCTTCTACATGCG
CGGGGTCCTCTCGAATATGACCGTGTCTTTATAAGGCTCATAATAAATGA
CGCCTGTGCTTTGAGGTGTATCGGAACAGAACAGGGCGATATCTCGACAA
ATACCTTCTGCTTACTTGAAGTCAAAACTCGTCTGCAACAAGCCACGATC
GGGCAATTAGCACATAGATACTTTGGTGTCATGCGACCCGTACATAAAAG
ATCTCCACTTTTATCTGTTTCCATTATATCTGTCATACTTCTACCTCTCA
ATTTGATATTGATTGTCTGA
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protein sequence of rna6702

>rna6702-protein ID=rna6702-protein|Name=rna6702|organism=Nannochloropsis gaditana|type=polypeptide|length=184bp
MGDEPMKLQLLSNSNGVLATELVGVDDDYQTFSYAYKFTTNQGGFLCRRY
DVFDAVGLRCCDVRWALGKLRIVMLPDGYVTEKCKPSTEWLGKHDISEWA
PASRDFQKQWQQMVKDELLSCRKDLLANTLHHFRDLCKDNPDTKEALRDL
VLVDDEDVDSVVNNFAGEFKRTKLTEKIWKSVKL
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mRNA from alignment at CM002469.1:300708..301324+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna6702 ID=rna6702|Name=rna6702|organism=Nannochloropsis gaditana|type=mRNA|length=617bp|location=Sequence derived from alignment at CM002469.1:300708..301324+ (Nannochloropsis gaditana)
ATGGGAGATGAACCTATGAAGCTGCAGCTCCTCTCGAACAGCAACGGAGT
GCTGGCAACTGAGCTTGTAGGCGTGGACGACGACTACCAAACTTTCTCCT
ACGCGTATAAATTCACAACTAATCAAGGAGGATTCCTATGCCGACGATAT
GATGTCTTTGATGCGGTTGGTTTACGTTGTTGTGACGTTCGGTGGGCACT
GGGCAAGTTAAGGATAGTGATGCTCCCAGATGGCTATGTTACCGTTTTGT
TCCGAACGAAAAGCGCGAGGAATgaatcatttttttttctcttaCCGCTA
TCCAGGAGAAATGTAAGCCCTCCACGGAATGGCTTGGTAAGCACGACATC
TCCGAGTGGGCCCCGGCGTCTCGTGATTTTCAGAAGCAATGGCAGCAAAT
GGTGAAGGACGAGCTCCTGTCTTGCCGCAAGGATTTGCTCGCCAACACCC
TCCATCACTTCCGCGATCTCTGTAAGGATAATCCGGACACTAAAGAAGCC
CTGAGGGATCTCGTTCTagtcgacgacgaggacgtggactcCGTGGTGAA
CAACTTCGCGGGCGAATTCAAGCGAACGAAACTGACCGAGAAGATTTGGA
AGAGCGTCAAGCTTTGA
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Coding sequence (CDS) from alignment at CM002469.1:300708..301324+

>rna6702 ID=rna6702|Name=rna6702|organism=Nannochloropsis gaditana|type=CDS|length=1110bp|location=Sequence derived from alignment at CM002469.1:300708..301324+ (Nannochloropsis gaditana)
ATGGGAGATGAACCTATGAAGCTGCAGCTCCTCTCGAACAGCAACGGAGT
GCTGGCAACTGAGCTTGTAGGCGTGGACGACGACTACCAAACTTTCTCCT
ACGCGTATAAATTCACAACTAATCAAGGAGGATTCCTATGCCGACGATAT
GATGTCTTTGATGCGGTTGGTTTACGTTGTTGTGACGTTCGGTGGGCACT
GGGCAAGTTAAGGATAGTGATGCTCCCAGATGGCTATGTTACCGAGAAAT
GTAAGCCCTCCACGGAATGGCTTGGTAAGCACGACATCTCCGAGTGGGCC
CCGGCGTCTCGTGATTTTCAGAAGCAATGGCAGCAAATGGTGAAGGACGA
GCTCCTGTCTTGCCGCAAGGATTTGCTCGCCAACACCCTCCATCACTTCC
GCGATCTCTGTAAGGATAATCCGGACACTAAAGAAGCCCTGAGGGATCTC
GTTCTagtcgacgacgaggacgtggactcCGTGGTGAACAACTTCGCGGG
CGAATTCAAGCGAACGAAACTGACCGAGAAGATTTGGAAGAGCGTCAAGC
TTTGAATGGGAGATGAACCTATGAAGCTGCAGCTCCTCTCGAACAGCAAC
GGAGTGCTGGCAACTGAGCTTGTAGGCGTGGACGACGACTACCAAACTTT
CTCCTACGCGTATAAATTCACAACTAATCAAGGAGGATTCCTATGCCGAC
GATATGATGTCTTTGATGCGGTTGGTTTACGTTGTTGTGACGTTCGGTGG
GCACTGGGCAAGTTAAGGATAGTGATGCTCCCAGATGGCTATGTTACCGA
GAAATGTAAGCCCTCCACGGAATGGCTTGGTAAGCACGACATCTCCGAGT
GGGCCCCGGCGTCTCGTGATTTTCAGAAGCAATGGCAGCAAATGGTGAAG
GACGAGCTCCTGTCTTGCCGCAAGGATTTGCTCGCCAACACCCTCCATCA
CTTCCGCGATCTCTGTAAGGATAATCCGGACACTAAAGAAGCCCTGAGGG
ATCTCGTTCTagtcgacgacgaggacgtggactcCGTGGTGAACAACTTC
GCGGGCGAATTCAAGCGAACGAAACTGACCGAGAAGATTTGGAAGAGCGT
CAAGCTTTGA
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Synonyms
Publications