rna6698, rna6698 (mRNA) Nannochloropsis gaditana

Overview
Namerna6698
Unique Namerna6698
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1943
Alignment locationCM002469.1:286452..287876 +

Link to JBrowse

Properties
Property NameValue
Productdynactin subunit 2-like isoform 3
Orig transcript idgnl|cribi|Naga_100027g3.168.mrna
Orig protein idgnl|cribi|Naga_100027g3.168
GenedynB
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002469.1supercontigCM002469.1:286452..287876 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
dynBgene6476Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna6698rna6698-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM23990.1cds6682Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna6698 ID=rna6698|Name=rna6698|organism=Nannochloropsis gaditana|type=mRNA|length=1943bp
TGCCGAAATTGACACCGTGCTGCGCGTGGGAGCTGATGCCATAGTGTCGC
GTTACTAATTGAAAGAGATTTGCATTGAACATTTCTCACCTACTGCCACC
CGTGATGACAGATCGTCGCTCAGAGCTCTCCAGGCGAAAAGAAGGGGTCT
CGCCTTCGTACACGTAGAACAAAACCCAGAAAACAGCTCACGACAAGTCA
TCAAGCCATGTCTCTCGTATTCGATGAGTATGGTCGACCGTTCATTATTC
TTCGTGAGCAGCAGGCACAAAATCGGCTGAAAGGCTTGGAGGCTCAGAAG
TCCAATATCATGGCCGCCCGCTCCGTCTCGCAGATTCTTCGCACCTCCTT
CGGCCCCAAGGGAATGGATAAGATGCTCGTCAACTCGGACGGAGACGTGA
CCATATCCAACGACGGTGCTACCATCCTGCAGAAGATGGACGTGGAGCAC
CAAGTCGCCCGCCTCCTGGTCGAACTCTCCCAGTCCCAGGACGAGGAGAT
CGGGGACGGGACGACCGGGGTGGTGGTGTTGGCGGGGGCGCTCTTGGAGC
AGGCCGAGAAGCTGCTGGACAGAGGCCTTCATCCTGTGCGCATGGCGGAG
GGCTTCGAAAAGGCCTGCCAGCTGGCAATGGCCCACCTGGAGACTATCGC
GGACAGCGTCAGCTTCGGGCGCGAGAACATCGAGCCCCTGTACGATACGG
CCATGACCACGCTCAGTTCTAAGATAGTCAACATCCATAAGTCCAAGATG
GCGCGCATCGCCGTGGACGCCGTCTTGAGCGTGGCGGATTTGGAGCGGAA
GGACGTGAACTTCGACATGATCAAGGTGGAGGGAAAGCCAGGGGGCCGGC
TGGAGGACACGGAGCTGGTCCGGGGCATCGTCGTGGACAAGGAGATCTCG
CACCCCCAGATGCCCAAGACGATCAAAGACGCCAAGATCGCCATCCTCAC
CTGCCCCTTCGAGCCCCCCAAGCCCAAGACCAAGCACAAGCTGGACATAT
CCTCCCGGGAGGCCTACGAACGCCTGTACGAGCGCGAGCAGGAGTATTTT
ACCACCATGGTCCGACAGTGCAAGGACTCGGGCGCCAACCTGATCATTTG
TCAGTGGGGATTCGACGACGAGGCGAACCATCTGCTTCTCCAGAACCAAC
TCCCGGCCGTCCGCTGGGTCGGTGGCGTGGAGCTGGAGCTCATTGCCATC
GCCACTGGTGGGAGGATCGTTCCGCGCTTTTCCGAGCTGTCCCCCGAAAA
ATTGGGGAGGGCGGGGCTGGTCAGGGAGGTGGCCTTCGGGACCACCAAGG
AGCGCATGCTGGTGATCGAGGACTGCGCAAAGTCCCAGGCCGTGACGATC
TTGGTCCGGGGAGGGAACAAGATGATCGTGGAGGAGGCGAAGCGTTCCCT
GCACGATGCCATGTGCGTGGTGCGCAACTTGATCAAGGACAACCGCATCG
TCTACGGAGGGGGCTCGGCGGAGATTTCCTGCTCTATCGCAGTGGCGAAA
GCAGCGGACACAGAGACGGGGGTGGACCAATACGCCATCCGCGCTTTTGC
CGACGCCCTCGACGACGTGCCCATGGCGTTGGCGGAAAATGCTGGCCTCT
CTCCCATTACAGAACTGAGTCAGGTGAAGTCGCAGCAGATCAAGGACGGC
AATCCTCACATTGGGGTGGATTGTATGCAATCGGGAGTTGCAGACATGCG
CACCCAACGAATTTTTGAAACCTTGATTGGAAAGCAGCAACAATTTCAAT
TGGCTACCCAGCTTGTGCGGATGGTTTTGAAAATCGACGATGTGCTTATG
CATGGGAACTTTCAGTAAAGAACAAGTTTCGACAAGAGAAAGACCGCACA
AATTTAAAGGGCAAAGGGCGCAGAACGGGGGGTAACGGGGAGGTTGCGCT
TAATAGCCTCTGGATAAAGAACAAGTATCGATAGCCATCGAGT
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protein sequence of rna6698

>rna6698-protein ID=rna6698-protein|Name=rna6698|organism=Nannochloropsis gaditana|type=polypeptide|length=474bp
MEREEELVFETPDTVECGVESCGNSGGPSRGTLPYLGHDQSPTSNPDDLV
PTPLDPAAAFEVFHGKCFYTPSLTNLSGSIASKSGLPQGCSSGPSRRWQG
QCIEGEVVHESPAERYVRLKGETVELAEELEALKAVQDKRSAESGDKGAE
ATWLWGHLASEVSMLQADLLNMVGDPDHAQVLSQKAGGSGGGEEGGSKDT
LARVAAEEDLVQGLMRRVDELAGRTNRRDKGSERPHKYQDAGHSQSRADK
GPGEEAEGVVYELYYDANDSRHDRASHSAQQLQTLEGRLAAIEKFLLSNE
ESDTATSGMAGLVLPSRTLPLLEAVARVERQAALLDPVTVETMRQRLLLL
KSEWEAFKRERLRLASFWDRESGSHFRRVESLYDAMERLAPVAADLPHLV
SRLRVLQSLHRESLQFKGRLDSVERGQARLRQLLEGAVTSVEDVKKSLQD
NVRQMEENVRSVDVRLRELMDTDT
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mRNA from alignment at CM002469.1:286452..287876+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna6698 ID=rna6698|Name=rna6698|organism=Nannochloropsis gaditana|type=mRNA|length=1425bp|location=Sequence derived from alignment at CM002469.1:286452..287876+ (Nannochloropsis gaditana)
ATGGAGCGTGAGGAAGAATTGGTGTTTGAGACACCGGACACGGTAGAGTG
CGGGGTTGAGAGCTGCGGGAACTCTGGGGGCCCTTCACGCGGCACGCTGC
CATACCTGGGCCATGACCAGAGCCCGACTTCCAACCCTGATGACCTTGTG
CCCACCCCTCTCGAtcccgccgctgccttcGAAGTTTTCCACGGCAAATG
CTTTTACACCCCATCTTTGACCAATTTGTCTGGTTCGATCGCCAGCAAGT
CTGGGCTTCCTCAGGGTTGTTCCTCAGGACCAAGTAGGAGATGGCAGGGC
CAATGTATCGAGGGTGAAGTCGTGCATGAGTCCCCTGCAGAGCGCTACGT
CCGACTCAAGGGAGAAACTGTCGAACTAGCGGAAGAGTTGGAAGCCCTCA
AGGCCGTGCAAGATAAGAGAAGTGCTGAATCAGGCGACAAGGGCGCTGAG
GCCACCTGGCTGTGGGGGCATTTAGCCAGCGAGGTGTCCATGCTTCAAGC
GGATTTACTGAATATGGTGGGGGACCCTGATCATGCTCAAGTGCTGTCTC
AAAAagctggagggagcggtggaggagaagagggaggtagcAAGGACACC
CTCGCCCGTGTCGCGGCCGAAGAGGACCTGGTGCAGGGTTTGATGCGCAG
GGTGGACGAGCTCGCGGGTCGCACGAACCGGAGGGACAAGGGCAGCGAAC
GCCCTCACAAATACCAGGATGCTGGACACTCCCAGTCTCGAGCCGAcaag
gggccgggggaggaggctgaaggGGTGGTCTATGAACTCTACTACGACGC
AAACGACAGCAGGCACGACAGGGCCTCCCACTCCGCACAACAGCTGCAAA
CCCTTGAGGGGCGACTCGCGGCGATCGAAAAATTTCTGTTGTCAAACGAA
GAAAGTGACACAGCTACGTCGGGCATGGCGGGTCTGGTCCTGCCCTCGCG
GACGCTTCCCTtgctggaggccgtggccagggTCGAGCGGCAGGCGGCTT
TGCTGGATCCGGTAACAGTCGAGACGATGCGTCAGCGACTCCTGCTCTTG
AAGTCGGAATGGGAGGCATTCAAAAGGGAACGTCTTAGGCTTGCCAGTTT
TTGGGACCGAGAATCTGGGAGTCATTTCCGCCGGGTGGAGTCTCTGTACG
ATGCGATGGAGAGGCTGGCGCCCGTGGCCGCGGACTTGCCGCATCTAGTG
AGCCGGCTCCGAGTCCTGCAAAGCTTGCACAGAGAGAGCCTTCAATTCAA
AGGACGATTGGACAGCGTGGAGCGAGGACAAGCGAGATTGCGGCAGCTTC
TGGAAGGGGCGGTGacgagcgtggaggacgtgaagaaGAGCTTGCAGGAT
AACGTGaggcagatggaggagaacgtGAGGAGTGTGGACGTACGTTTGCG
AGAGTTGATGGACACAGACACATGA
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Coding sequence (CDS) from alignment at CM002469.1:286452..287876+

>rna6698 ID=rna6698|Name=rna6698|organism=Nannochloropsis gaditana|type=CDS|length=1425bp|location=Sequence derived from alignment at CM002469.1:286452..287876+ (Nannochloropsis gaditana)
ATGGAGCGTGAGGAAGAATTGGTGTTTGAGACACCGGACACGGTAGAGTG
CGGGGTTGAGAGCTGCGGGAACTCTGGGGGCCCTTCACGCGGCACGCTGC
CATACCTGGGCCATGACCAGAGCCCGACTTCCAACCCTGATGACCTTGTG
CCCACCCCTCTCGAtcccgccgctgccttcGAAGTTTTCCACGGCAAATG
CTTTTACACCCCATCTTTGACCAATTTGTCTGGTTCGATCGCCAGCAAGT
CTGGGCTTCCTCAGGGTTGTTCCTCAGGACCAAGTAGGAGATGGCAGGGC
CAATGTATCGAGGGTGAAGTCGTGCATGAGTCCCCTGCAGAGCGCTACGT
CCGACTCAAGGGAGAAACTGTCGAACTAGCGGAAGAGTTGGAAGCCCTCA
AGGCCGTGCAAGATAAGAGAAGTGCTGAATCAGGCGACAAGGGCGCTGAG
GCCACCTGGCTGTGGGGGCATTTAGCCAGCGAGGTGTCCATGCTTCAAGC
GGATTTACTGAATATGGTGGGGGACCCTGATCATGCTCAAGTGCTGTCTC
AAAAagctggagggagcggtggaggagaagagggaggtagcAAGGACACC
CTCGCCCGTGTCGCGGCCGAAGAGGACCTGGTGCAGGGTTTGATGCGCAG
GGTGGACGAGCTCGCGGGTCGCACGAACCGGAGGGACAAGGGCAGCGAAC
GCCCTCACAAATACCAGGATGCTGGACACTCCCAGTCTCGAGCCGAcaag
gggccgggggaggaggctgaaggGGTGGTCTATGAACTCTACTACGACGC
AAACGACAGCAGGCACGACAGGGCCTCCCACTCCGCACAACAGCTGCAAA
CCCTTGAGGGGCGACTCGCGGCGATCGAAAAATTTCTGTTGTCAAACGAA
GAAAGTGACACAGCTACGTCGGGCATGGCGGGTCTGGTCCTGCCCTCGCG
GACGCTTCCCTtgctggaggccgtggccagggTCGAGCGGCAGGCGGCTT
TGCTGGATCCGGTAACAGTCGAGACGATGCGTCAGCGACTCCTGCTCTTG
AAGTCGGAATGGGAGGCATTCAAAAGGGAACGTCTTAGGCTTGCCAGTTT
TTGGGACCGAGAATCTGGGAGTCATTTCCGCCGGGTGGAGTCTCTGTACG
ATGCGATGGAGAGGCTGGCGCCCGTGGCCGCGGACTTGCCGCATCTAGTG
AGCCGGCTCCGAGTCCTGCAAAGCTTGCACAGAGAGAGCCTTCAATTCAA
AGGACGATTGGACAGCGTGGAGCGAGGACAAGCGAGATTGCGGCAGCTTC
TGGAAGGGGCGGTGacgagcgtggaggacgtgaagaaGAGCTTGCAGGAT
AACGTGaggcagatggaggagaacgtGAGGAGTGTGGACGTACGTTTGCG
AGAGTTGATGGACACAGACACATGA
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Synonyms
Publications