EWM23990.1, cds6682 (CDS) Nannochloropsis gaditana

Overview
NameEWM23990.1
Unique Namecds6682
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002469.1:286452..287876 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM23990.1
Productdynactin subunit 2-like isoform 3
Orig transcript idgnl|cribi|Naga_100027g3.168.mrna
GenedynB
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002469.1supercontigCM002469.1:286452..287876 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
Vocabulary: Cellular Component
TermDefinition
GO:0005856cytoskeleton
Homology
BLAST of EWM23990.1 vs. NCBI_GenBank
Match: gi|585105276|gb|EWM23990.1| (dynactin subunit 2-like isoform 3 [Nannochloropsis gaditana])

HSP 1 Score: 959.903 bits (2480), Expect = 0.000e+0
Identity = 474/474 (100.00%), Postives = 474/474 (100.00%), Query Frame = 0
Query:    1 MEREEELVFETPDTVECGVESCGNSGGPSRGTLPYLGHDQSPTSNPDDLVPTPLDPAAAFEVFHGKCFYTPSLTNLSGSIASKSGLPQGCSSGPSRRWQGQCIEGEVVHESPAERYVRLKGETVELAEELEALKAVQDKRSAESGDKGAEATWLWGHLASEVSMLQADLLNMVGDPDHAQVLSQKAGGSGGGEEGGSKDTLARVAAEEDLVQGLMRRVDELAGRTNRRDKGSERPHKYQDAGHSQSRADKGPGEEAEGVVYELYYDANDSRHDRASHSAQQLQTLEGRLAAIEKFLLSNEESDTATSGMAGLVLPSRTLPLLEAVARVERQAALLDPVTVETMRQRLLLLKSEWEAFKRERLRLASFWDRESGSHFRRVESLYDAMERLAPVAADLPHLVSRLRVLQSLHRESLQFKGRLDSVERGQARLRQLLEGAVTSVEDVKKSLQDNVRQMEENVRSVDVRLRELMDTDT 474
            MEREEELVFETPDTVECGVESCGNSGGPSRGTLPYLGHDQSPTSNPDDLVPTPLDPAAAFEVFHGKCFYTPSLTNLSGSIASKSGLPQGCSSGPSRRWQGQCIEGEVVHESPAERYVRLKGETVELAEELEALKAVQDKRSAESGDKGAEATWLWGHLASEVSMLQADLLNMVGDPDHAQVLSQKAGGSGGGEEGGSKDTLARVAAEEDLVQGLMRRVDELAGRTNRRDKGSERPHKYQDAGHSQSRADKGPGEEAEGVVYELYYDANDSRHDRASHSAQQLQTLEGRLAAIEKFLLSNEESDTATSGMAGLVLPSRTLPLLEAVARVERQAALLDPVTVETMRQRLLLLKSEWEAFKRERLRLASFWDRESGSHFRRVESLYDAMERLAPVAADLPHLVSRLRVLQSLHRESLQFKGRLDSVERGQARLRQLLEGAVTSVEDVKKSLQDNVRQMEENVRSVDVRLRELMDTDT
Sbjct:    1 MEREEELVFETPDTVECGVESCGNSGGPSRGTLPYLGHDQSPTSNPDDLVPTPLDPAAAFEVFHGKCFYTPSLTNLSGSIASKSGLPQGCSSGPSRRWQGQCIEGEVVHESPAERYVRLKGETVELAEELEALKAVQDKRSAESGDKGAEATWLWGHLASEVSMLQADLLNMVGDPDHAQVLSQKAGGSGGGEEGGSKDTLARVAAEEDLVQGLMRRVDELAGRTNRRDKGSERPHKYQDAGHSQSRADKGPGEEAEGVVYELYYDANDSRHDRASHSAQQLQTLEGRLAAIEKFLLSNEESDTATSGMAGLVLPSRTLPLLEAVARVERQAALLDPVTVETMRQRLLLLKSEWEAFKRERLRLASFWDRESGSHFRRVESLYDAMERLAPVAADLPHLVSRLRVLQSLHRESLQFKGRLDSVERGQARLRQLLEGAVTSVEDVKKSLQDNVRQMEENVRSVDVRLRELMDTDT 474          
BLAST of EWM23990.1 vs. NCBI_GenBank
Match: gi|1013948218|gb|KYR01883.1| (dynactin 50 kDa subunit [Dictyostelium lacteum])

HSP 1 Score: 95.1301 bits (235), Expect = 1.694e-17
Identity = 102/474 (21.52%), Postives = 198/474 (41.77%), Query Frame = 0
Query:    8 VFETPDTVECGVESCGNSGGPSRGTLPYLGHDQSPTSNPDDLVPTPLDPAAAFEVFHGKCFYTPSLTNLSGSIASKSGLPQGCSSGPSRRWQGQCIEGEVVH---------ESPAERYVRLKGETVELAEELEALKAVQDKRSAESG---DKGAEATWLWGHLASEVSMLQADLLNMVGDPDHAQVLSQKAGGSGGGEEGGSKDTLARVAAEEDLVQGLMRRVDELAGRTNRRDKGSERPHKYQDAGHSQSRADKGPGEEAEGVVYELYYDANDSRHDRASHSAQQLQTLEGRLAAIEKFLLSNEESDTATSGMAGLVLPSRTLPLLEAVARVERQAALLDPVTVETMRQRLLLLKSEWEAFKRERLRLASFWDRESGSHFRRVESLYDAMERLAPVAADLPHLVSRLRVLQSLHRESLQFKGRLDSVERGQARLRQLLEGAVTSVEDVKKSLQDNVRQMEENVRSVDVRLREL 469
             FETPDT +                       QS   N D +  T L    A+  F+ + F   +  + S SIA K          P     G  I+ + V          E+P +++ RL+ E +   +E++++        AE+G   +K  +A  L   LA     LQ  L +++ +     +L +            +K  L     +    + L+  ++   G     + G        D     + + KG       V YEL+Y A+ S++      +Q+L  LE RLA +E            T G       S ++P+ + +  +  + +LL+P  ++ ++Q+L     + EA K +    A+   +   ++ +++  ++D M R   ++  LP +++R+  L+SLH+E + F  +L S+E+ Q  +  LL+     +  + +S + N+  ++ N+ S++ R+ +L
Sbjct:   32 TFETPDTSDLNTN----------------NEVQSEIENAD-IDRTSLQSTKAYAKFNNRKFDNRN-EDFSDSIAKK---------KPVEIRTGGLIKNQNVFDILPSAQELETPLQKFQRLQYEVMNFTQEMQSV--------AETGGEVEKDIKAIDLTNQLAD----LQNQLSSLLSNDKLVPILDK------------NKQILHHSQIQNTSSKKLISEIESFTGN----NVGV-------DESKVSTESSKGNNNH---VTYELFYTADQSKY----QQSQRLIDLEKRLAKLENL----------TGG------KSDSIPITQTLLEIREKLSLLEPTKIDLIQQKLKTSLKDMEAIKVQEENNAASTQKALNTNEKKINEIFDQMNRWDQISQQLPSIINRMYTLRSLHQEGITFSAQLSSLEKQQYEITSLLKNDSQIMNKMDESFKSNLSTIKLNIESIEKRINDL 420          
BLAST of EWM23990.1 vs. NCBI_GenBank
Match: gi|566026220|gb|ETI49131.1| (hypothetical protein F443_06933 [Phytophthora parasitica P1569] >gi|568021517|gb|ETL95604.1| hypothetical protein L917_06618 [Phytophthora parasitica])

HSP 1 Score: 92.8189 bits (229), Expect = 1.064e-16
Identity = 116/481 (24.12%), Postives = 210/481 (43.66%), Query Frame = 0
Query:    8 VFETPDTVECGVESCGNSGGPSRGTLPYLG---------HDQSPTSNPDDLVPTPLDPAAAFEVFHGKCFYTPSLTNLSGSIASKSGLPQGCSSGPSRRWQGQCIEGEVVHESPAERYVRLKGETVELAEELEALKA-VQDKRSAESGDKGAEATWLWGHLASEVSMLQADLLNMVGDPDHAQVLSQKAGGSGGGEEGGSKDTLARVAAEEDLVQGLMRRVDELAGRTNRRDKGSERPHKYQDAGHSQSRADKGPGEEAEGVVYELYYDANDSRHDRASHSAQQLQTLEGRLAAIEKFLLSNEESDTATSGMAGLVLPSRTLPLLEAVARVERQAALLDPVTVETMRQRLLLLKSEWEAFKRERLR------LASFWDRESGSHFRRVESLYDAMERLAPVAADLPHLVSRLRVLQSLHRESLQFKGRLDSVERGQARLRQLLEGAVTSVEDVKKSLQDNVRQMEENVRSVDVRLRELMDT 472
            VFETP+  E   +    +   +R     +G         HD+S     +  +P       AFEVF GK  Y P+L         ++      S+G S+             ESP  R+ RL  E  EL  +L  L A  + K+     D G EA +    +   ++ LQ +L  +  +      L   +          +       + ++DL     +++D L     R+ +G            + S +D  P      +VYE+Y +   +  DR + +  ++ TLE R++ +E+ + S +  +    G++ L   S +  L  AVA++E++ AL+    ++ ++ R   L  E+    + +        L S  DRE      +++ +YD +  L  V A +P +V RL  L+S+H E+L    R+D +E+ QA L +LL+     + +++ SL +NV+  + N++ +D R+ +L+ T
Sbjct:   20 VFETPEPEEA-FQPYAPANASARQARAGVGAGPEAEGHFHDKSSMELDEQELPA----TQAFEVFMGKV-YKPALPK-------QTEYESSASTGSSK----------ATLESPLARFTRLSLELKELEADLTLLAADAEHKKHKVMVDAGQEAEF--NEVMQGLNTLQLNLSALEKNAAFQPFLRSGSNSVAASSADAAL------SLQKDLTAKFFQQIDAL----KRQQQGQ---------TTTPSSSDGAP------IVYEIYSNGELNAVDRDAKT--RVATLEARISTLERAIGSFQGQELRLDGVSSLSGAS-SADLTSAVAQLEQRVALMSEKNLDAVKTRTTALVHEFTLLSKLKQSPSVQGALNSQADRE------QIQKIYDQLSSLDAVTASVPTIVDRLVTLKSVHDEALNVTARVDRMEQTQASLSELLDSDAALLANMEASLAENVQIFQSNIQQLDDRMAKLLAT 441          
BLAST of EWM23990.1 vs. NCBI_GenBank
Match: gi|570988436|gb|ETP46848.1| (hypothetical protein F442_06968 [Phytophthora parasitica P10297])

HSP 1 Score: 92.4337 bits (228), Expect = 1.638e-16
Identity = 116/481 (24.12%), Postives = 209/481 (43.45%), Query Frame = 0
Query:    8 VFETPDTVECGVESCGNSGGPSRGTLPYLG---------HDQSPTSNPDDLVPTPLDPAAAFEVFHGKCFYTPSLTNLSGSIASKSGLPQGCSSGPSRRWQGQCIEGEVVHESPAERYVRLKGETVELAEELEALKA-VQDKRSAESGDKGAEATWLWGHLASEVSMLQADLLNMVGDPDHAQVLSQKAGGSGGGEEGGSKDTLARVAAEEDLVQGLMRRVDELAGRTNRRDKGSERPHKYQDAGHSQSRADKGPGEEAEGVVYELYYDANDSRHDRASHSAQQLQTLEGRLAAIEKFLLSNEESDTATSGMAGLVLPSRTLPLLEAVARVERQAALLDPVTVETMRQRLLLLKSEWEAFKRERLR------LASFWDRESGSHFRRVESLYDAMERLAPVAADLPHLVSRLRVLQSLHRESLQFKGRLDSVERGQARLRQLLEGAVTSVEDVKKSLQDNVRQMEENVRSVDVRLRELMDT 472
            VFETP+  E   +    +   +R     +G         HD+S     +  +P       AFEVF GK  Y P+L         ++      S+G S+             ESP  R+ RL  E  EL  +L  L A  + K+     D G EA +    +   ++ LQ +L  +  +      L   +          +       + ++DL     +++D L     R+ +G            + S +D  P      +VYE+Y +   +  DR + +  ++ TLE R++ +E+ + S +  +    G++ L   S +  L  AVA++E++ AL+    ++ ++ R   L  E+    + +        L S  DRE      +++ +YD +  L  V A +P +V RL  L+S+H E+L    R+D +E+ QA L +LL      + +++ SL +NV+  + N++ +D R+ +L+ T
Sbjct:   20 VFETPEPEEA-FQPYAPANASARQARAGVGAGPEAEGHFHDKSSMELDEQELPA----TQAFEVFMGKV-YKPALPK-------QTEYESSASTGSSK----------ATLESPLARFTRLSLELKELEADLTLLAADAEHKKHKVMVDAGQEAEF--NEVMQGLNTLQLNLSALEKNAAFQPFLRSGSNSVAASSADAAL------SLQKDLTAKFFQQIDTL----KRQQQGQ---------TTTPSSSDGAP------IVYEIYSNGELNAVDRDAKT--RVATLEARISTLERAIGSFQGQELRLDGVSSLSGAS-SADLTSAVAQLEQRVALMSEKNLDAVKTRTTALVHEFTLLSKLKQSPSVQGALNSQADRE------QIQKIYDQLSSLDAVTASVPTIVDRLVTLKSVHDEALNVTARVDRMEQTQASLSELLHSDAALLANMEASLAENVQIFQSNIQQLDDRMAKLLAT 441          
BLAST of EWM23990.1 vs. NCBI_GenBank
Match: gi|675189207|ref|XP_008903488.1| (hypothetical protein PPTG_09995 [Phytophthora parasitica INRA-310] >gi|567963529|gb|ETK89024.1| hypothetical protein L915_06808 [Phytophthora parasitica] >gi|567992236|gb|ETL42431.1| hypothetical protein L916_06750 [Phytophthora parasitica] >gi|568096223|gb|ETN10974.1| hypothetical protein PPTG_09995 [Phytophthora parasitica INRA-310] >gi|570953644|gb|ETP18901.1| hypothetical protein F441_06936 [Phytophthora parasitica CJ01A1] >gi|970647248|gb|KUF87120.1| Dynactin subunit 2 [Phytophthora nicotianae])

HSP 1 Score: 92.0485 bits (227), Expect = 1.699e-16
Identity = 116/481 (24.12%), Postives = 209/481 (43.45%), Query Frame = 0
Query:    8 VFETPDTVECGVESCGNSGGPSRGTLPYLG---------HDQSPTSNPDDLVPTPLDPAAAFEVFHGKCFYTPSLTNLSGSIASKSGLPQGCSSGPSRRWQGQCIEGEVVHESPAERYVRLKGETVELAEELEALKA-VQDKRSAESGDKGAEATWLWGHLASEVSMLQADLLNMVGDPDHAQVLSQKAGGSGGGEEGGSKDTLARVAAEEDLVQGLMRRVDELAGRTNRRDKGSERPHKYQDAGHSQSRADKGPGEEAEGVVYELYYDANDSRHDRASHSAQQLQTLEGRLAAIEKFLLSNEESDTATSGMAGLVLPSRTLPLLEAVARVERQAALLDPVTVETMRQRLLLLKSEWEAFKRERLR------LASFWDRESGSHFRRVESLYDAMERLAPVAADLPHLVSRLRVLQSLHRESLQFKGRLDSVERGQARLRQLLEGAVTSVEDVKKSLQDNVRQMEENVRSVDVRLRELMDT 472
            VFETP+  E   +    +   +R     +G         HD+S     +  +P       AFEVF GK  Y P+L         ++      S+G S+             ESP  R+ RL  E  EL  +L  L A  + K+     D G EA +    +   ++ LQ +L  +  +      L   +          +       + ++DL     +++D L     R+ +G            + S +D  P      +VYE+Y +   +  DR + +  ++ TLE R++ +E+ + S +  +    G++ L   S +  L  AVA++E++ AL+    ++ ++ R   L  E+    + +        L S  DRE      +++ +YD +  L  V A +P +V RL  L+S+H E+L    R+D +E+ QA L +LL      + +++ SL +NV+  + N++ +D R+ +L+ T
Sbjct:   20 VFETPEPEEA-FQPYAPANASARQARAGVGAGPEAEGHFHDKSSMELDEQELPA----TQAFEVFMGKV-YKPALPK-------QTEYESSASTGSSK----------ATLESPLARFTRLSLELKELEADLTLLAADAEHKKHKVMVDAGQEAEF--NEVMQGLNTLQLNLSALEKNAAFQPFLRSGSNSVAASSADAAL------SLQKDLTAKFFQQIDAL----KRQQQGQTT---------TPSSSDGAP------IVYEIYSNGELNAVDRDAKT--RVATLEARISTLERAIGSFQGQELRLDGVSSLSGAS-SADLTSAVAQLEQRVALMSEKNLDAVKTRTTALVHEFTLLSKLKQSPSVQGALNSQADRE------QIQKIYDQLSSLDAVTASVPTIVDRLVTLKSVHDEALNVTARVDRMEQTQASLSELLHSDAALLANMEASLAENVQIFQSNIQQLDDRMAKLLAT 441          
BLAST of EWM23990.1 vs. NCBI_GenBank
Match: gi|570329918|gb|ETO77866.1| (hypothetical protein F444_06998 [Phytophthora parasitica P1976])

HSP 1 Score: 92.0485 bits (227), Expect = 1.950e-16
Identity = 117/481 (24.32%), Postives = 212/481 (44.07%), Query Frame = 0
Query:    8 VFETPDTVECGVESCGNSGGPSRGTLPYLG---------HDQSPTSNPDDLVPTPLDPAAAFEVFHGKCFYTPSLTNLSGSIASKSGLPQGCSSGPSRRWQGQCIEGEVVHESPAERYVRLKGETVELAEELEALKA-VQDKRSAESGDKGAEATWLWGHLASEVSMLQADLLNMVGDPDHAQVLSQKAGGSGGGEEGGSKDTLARVAAEEDLVQGLMRRVDELAGRTNRRDKGSERPHKYQDAGHSQSRADKGPGEEAEGVVYELYYDANDSRHDRASHSAQQLQTLEGRLAAIEKFLLSNEESDTATSGMAGLVLPSRTLPLLEAVARVERQAALLDPVTVETMRQRLLLLKSEWEAFKRERLR------LASFWDRESGSHFRRVESLYDAMERLAPVAADLPHLVSRLRVLQSLHRESLQFKGRLDSVERGQARLRQLLEGAVTSVEDVKKSLQDNVRQMEENVRSVDVRLRELMDT 472
            VFETP+  E   +    +   +R     +G         HD+S     +  +P       AFEVF GK  Y P+L         ++      S+G S+             ESP  R+ RL  E  EL  +L  L A  + K+     D G EA +    +   ++ LQ +L  +  +      L   +          +    A ++ ++DL     +++D L     R+ +G            + S +D  P      +VYE+Y +   +  DR + +  ++ TLE R++ +E+ + S +  +    G++ L   S +  L  AVA++E++ AL+    ++ ++ R   L  E+    + +        L S  DRE      +++ +YD +  L  V A +P +V RL  L+S+H E+L    R+D +E+ QA L +LL+     + +++ SL +NV+  + N++ +D R+ +L+ T
Sbjct:   20 VFETPEPEEA-FQPYAPANASARQARAGVGAGPEAEGHFHDKSSMELDEQELPA----TQAFEVFMGKV-YKPALPK-------QTEYESSASTGSSK----------ATLESPLARFTRLSLELKELEADLTLLAADAEHKKHKVMVDAGQEAEF--NEVMQGLNTLQLNLSALEKNAAFQPFLRSGSNSVA------ASSADAALSLQKDLTAKFFQQIDAL----KRQQQGQ---------TTTPSSSDGAP------IVYEIYSNGELNAVDRDAKT--RVATLEARISTLERAIGSFQGQELRLDGVSSLSGAS-SADLTSAVAQLEQRVALMSEKNLDAVKTRTTALVHEFTLLSKLKQSPSVQGALNSQADRE------QIQKIYDQLSSLDAVTASVPTIVDRLVTLKSVHDEALNVTARVDRMEQTQASLGELLDSDAALLANMEASLAENVQIFQSNIQQLDDRMAKLLAT 441          
BLAST of EWM23990.1 vs. NCBI_GenBank
Match: gi|568051904|gb|ETM48799.1| (hypothetical protein L914_06712 [Phytophthora parasitica])

HSP 1 Score: 91.6633 bits (226), Expect = 2.452e-16
Identity = 104/421 (24.70%), Postives = 190/421 (45.13%), Query Frame = 0
Query:   59 AFEVFHGKCFYTPSLTNLSGSIASKSGLPQGCSSGPSRRWQGQCIEGEVVHESPAERYVRLKGETVELAEELEALKA-VQDKRSAESGDKGAEATWLWGHLASEVSMLQADLLNMVGDPDHAQVLSQKAGGSGGGEEGGSKDTLARVAAEEDLVQGLMRRVDELAGRTNRRDKGSERPHKYQDAGHSQSRADKGPGEEAEGVVYELYYDANDSRHDRASHSAQQLQTLEGRLAAIEKFLLSNEESDTATSGMAGLVLPSRTLPLLEAVARVERQAALLDPVTVETMRQRLLLLKSEWEAFKRERLR------LASFWDRESGSHFRRVESLYDAMERLAPVAADLPHLVSRLRVLQSLHRESLQFKGRLDSVERGQARLRQLLEGAVTSVEDVKKSLQDNVRQMEENVRSVDVRLRELMDT 472
            AFEVF GK  Y P+L         ++      S+G S+             ESP  R+ RL  E  EL  +L  L A  + K+     D G EA +    +   ++ LQ +L  +  +      L   +          +       + ++DL     +++D L     R+ +G            + S +D  P      +VYE+Y +   +  DR + +  ++ TLE R++ +E+ + S +  +    G++ L   S +  L  AVA++E++ AL+    ++ ++ R   L  E+    + +        L S  DRE      +++ +YD +  L  V A +P +V RL  L+S+H E+L    R+D +E+ QA L +LL+     + +++ SL +NV+  + N++ +D R+ +L+ T
Sbjct:   75 AFEVFMGKV-YKPALPK-------QTEYESSASTGSSK----------ATLESPLARFTRLSLELKELEADLTLLAADAEHKKHKVMVDAGQEAEF--NEVMQGLNTLQLNLSALEKNAAFQPFLRSGSNSVAASSADAAL------SLQKDLTAKFFQQIDAL----KRQQQGQ---------TTTPSSSDGAP------IVYEIYSNGELNAVDRDAKT--RVATLEARISTLERAIGSFQGQELRLDGVSSLSGAS-SADLTSAVAQLEQRVALMSEKNLDAVKTRTTALVHEFTLLSKLKQSPSVQGALNSQADRE------QIQKIYDQLSSLDAVTASVPTIVDRLVTLKSVHDEALNVTARVDKMEQTQASLGELLDSDAALLANMEASLAENVQIFQSNIQQLDDRMAKLLAT 441          
BLAST of EWM23990.1 vs. NCBI_GenBank
Match: gi|1160566201|ref|XP_020428762.1| (dynactin 50 kDa subunit [Polysphondylium pallidum PN500] >gi|281202427|gb|EFA76630.1| dynactin 50 kDa subunit [Polysphondylium pallidum PN500])

HSP 1 Score: 89.7373 bits (221), Expect = 1.513e-15
Identity = 109/487 (22.38%), Postives = 204/487 (41.89%), Query Frame = 0
Query:    1 MEREEELVFETPDTVECGVESCGNSGGPSRGTLPYLGHDQSPTSNPDDLVPTPLDPAAAFEVFHGKCFYTPSLTN----LSGSIASKSGLPQGCSSGPSRR-WQGQCI---------EGEVVHESPAERYVRLKGETVELAEELEALKAVQDKRSAESGDKGAEATWLWGHLASEVSML-QADLLNMVGDPDHAQVLSQKAGGSGGGEEGGSKDTLARVAAEEDLVQGLMRRVDELAGRT--NRRDKGSERPHKYQDAGHSQSRADKGPGEEAEGVVYELYYDANDSRHDRASHSAQQLQTLEGRLAAIEKFLLSNEESDTATSGMAGLVLPSRTLPLLEAVARVERQAALLDPVTVETMRQRLLLLKSEWEAFK-RERLRLASFWDRESGSHFRRVESLYDAMERLAPVAADLPHLVSRLRVLQSLHRESLQFKGRLDSVERGQARLRQLLEGAVTSVEDVKKSLQDNVRQMEENVRSVDVRLREL 469
            M +E + +   PD      +S      P   T+        P    +++    L P+ AF  F  K      LTN     S SI  K          P++R ++ Q +         + +   E+P ++Y RL+ E   L +E++ +         E G KG E       L +++S+L   D L  + D +   +   + GG          DT       + L+ G+ +   E +G T  N +DK          + +               V YELYY  + +++       Q+L  L+ RLA +E  L +  E                ++PL +++  ++ + ALLD   ++ ++Q++ L+  + E+ K ++     S    ES     ++ S+Y+ M R   +   LP +++RL  L+SLH E L F   +  +++ Q+ +  LL+   T +  + +S + N++ ++ NV +++ R+ EL
Sbjct:   66 MSKESKRILNLPDIDPTQPDSFETPDVPEAATIVV----DEPELVNENIERVSLVPSKAFAKFANK-----KLTNDGEDFSDSIYKK----------PTKRHFKSQTVFDIIPSDATDADKKTETPLQKYQRLQFEVQSLRDEVQII--ADSNGEVEQGIKGVEMAHQLAELQNQLSLLLDNDKLRPILDENRQILHYSQLGG----------DT------SKTLINGI-KSFTESSGETADNNKDKSDSAAATSATSANH--------------VKYELYYTGDQAKY----QQLQRLTDLDKRLAQLETLLGNKTE---------------LSIPLTQSLVEIKEKLALLDSSKLDVLQQKMKLVTKQMESVKVQDESVTKSLTTNES-----KINSIYELMNRWDVIGQQLPTVINRLYTLRSLHEEGLSFSNHITQLDKEQSNITSLLKTNSTVMNKMDESFKSNMQTIQLNVEALEKRINEL 476          
BLAST of EWM23990.1 vs. NCBI_GenBank
Match: gi|325185843|emb|CCA20349.1| (conserved hypothetical protein [Albugo laibachii Nc14])

HSP 1 Score: 88.9669 bits (219), Expect = 1.800e-15
Identity = 111/472 (23.52%), Postives = 191/472 (40.47%), Query Frame = 0
Query:    8 VFETPD---TVECGVESCGNSGGPSRGTLPYLGHDQSPTSNPDDLVPTPLD-----PAAAFEVFHGKCFYTPSLTNLSGSIASKSGLPQGCSSGPSRRWQGQCIEGEVVHESPAERYVRLKGETVELAEELEAL--KAVQDKRSAESGDKGAEATWLWGHLASEVSMLQADLLNMVGDPDHAQVLSQKAGGSGGGEEGGSKDTLARVAAEEDLVQGLMRRVDELAGRTNRRDKGSERPHKYQDAGHSQSRADKGPGEEAEGVVYELYYDANDSRHDRASHSAQQLQTLEGRLAAIEKFLLSNEESDTATSGMAGLVLPSRTLPLLEAVARVERQAALLDPVTVETMRQRLLLLKSEWEAFKRERLRLASFWDRESGSHFRRVESLYDAMERLAPVAADLPHLVSRLRVLQSLHRESLQFKGRLDSVERGQARLRQLLEGAVTSVEDVKKSLQDNVRQMEENVRSVDVRLREL 469
            VFETPD   + +  +    +        + Y G  Q  T    D     +D     P  AFE F GK  Y P   N   +  +K  L     +  S  +           ESP ERY RL  E  EL E+L  L  +  Q   + ++ D   EA     ++   V+ L+ +L  M     +   L +        +   ++  L+ +         L+ +++E+               KYQ         +  P E    +VYE+Y+       +R   + Q++  LE R+AA+E+ + S   S      +  L        L+  V ++E++ ALL+   ++ ++ R   L  E+    + +   AS   + S    + +  LY+ ++ +  VA  +P LV RL  L+  H ES+ +  RL  VE     + +LLE  +  ++++++SL  N    + N   +D RL  L
Sbjct:   10 VFETPDQETSFQPYIRVPSSYVHAFERDIAYPGRYQDDTKGYLDKANAEIDESVVAPVQAFEAFMGKI-YQP---NYEEAYEAKGALKTNAQTQKSTTF-----------ESPIERYTRLMMEANELEEDLIILSKENQQTNVTGKALDTAREAEM--EYVIKGVNTLKQNLTAMQRKDSYQTFLQESQIQMSLDQNMSTQKKLSGI---------LLSQIEEM--------------KKYQ-------VDEVNPAESGPNMVYEIYHTGEVDSSER--DTKQRVVVLESRIAALERMVGSFYNSQGHLDALGSL----EGNDLVSIVTKMEKRVALLNETNLDAIKARTNALVHEFTLLSKLKESSASQIPKSSRDESQMLGQLYEKLQSVEDVACMVPSLVERLSTLKEFHEESMDWSQRLGRVEDTNIAIEELLERDLQLLQNMQQSLAANAELFQANTEKLDTRLNAL 428          
BLAST of EWM23990.1 vs. NCBI_GenBank
Match: gi|831772735|ref|XP_012753695.1| (hypothetical protein SAMD00019534_064210 [Acytostelium subglobosum LB1] >gi|735854327|dbj|GAM23246.1| hypothetical protein SAMD00019534_064210 [Acytostelium subglobosum LB1])

HSP 1 Score: 88.5817 bits (218), Expect = 2.580e-15
Identity = 84/387 (21.71%), Postives = 173/387 (44.70%), Query Frame = 0
Query:   92 SGPSRRWQGQCI------EGEVVHESPAERYVRLKGETVELAEELEALKAVQDKRSAESGDKGAEATWLWGHLASEVSML-QADLLNMVGDPDHAQVL--SQKAGGSGGGEEGGSKDTLARVAAEEDLVQGLMRRVDELAGRTNRRDKGSERPHKYQDAGHSQSRADKGPGEEAEGVVYELYYDANDSRHDRASHSAQQLQTLEGRLAAIEKFLLSNEESDTATSGMAGLVLPSRTLPLLEAVARVERQAALLDPVTVETMRQRLLLLKSEWEAFKRERLRLASFWDRESGSHFRRVESLYDAMERLAPVAADLPHLVSRLRVLQSLHRESLQFKGRLDSVERGQARLRQLLEGAVTSVEDVKKSLQDNVRQMEENVRSVDVRLREL 469
            S P R +  Q +      + +   E+P +++ RL+ E   L +E++ +   + +   E G  GAE     G L S++ +L + D L  + D ++ Q+L  SQ  GG+    +               L+ GL                   R    +   ++Q +   G       V YELYY  + +++ +     Q+L  L+ RLA +E  + +  E                ++PL +++  ++ + +LLD   ++ ++Q++ +   + E+ K +    +    +   ++  ++ ++Y+ M R   +   LP +++RL  L+SLH E L F   L  +E+ Q+ +  LL+   + +  + +S + N+  ++ NV S++ R+ EL
Sbjct:   88 SKPQRTFNNQTVFDLPSDDADRKEETPFQKFQRLQFEVKSLRDEVQIIANAEGE--VEPGITGAELAQQLGELQSQLGLLLENDKLRPILD-ENRQILHYSQLLGGTDSSRQ---------------LLNGL-------------------RSFAGESGANAQQQPAGGSSSSPNHVKYELYYSGDQAKYQQL----QRLTDLDKRLANLESQVGNKTE---------------LSIPLTQSLVEIKDKLSLLDSTKLDVLQQKMKVAMKQMESMKSQ----SETTTKSLSTNEAKINTIYELMNRWDVIGQQLPSIINRLYTLRSLHEEGLSFSSHLSELEKEQSNIASLLKTNSSLMNKMDESFKGNMVTIQNNVESLEKRISEL 414          
The following BLAST results are available for this feature:
BLAST of EWM23990.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585105276|gb|EWM23990.1|0.000e+0100.00dynactin subunit 2-like isoform 3 [Nannochloropsis... [more]
gi|1013948218|gb|KYR01883.1|1.694e-1721.52dynactin 50 kDa subunit [Dictyostelium lacteum][more]
gi|566026220|gb|ETI49131.1|1.064e-1624.12hypothetical protein F443_06933 [Phytophthora para... [more]
gi|570988436|gb|ETP46848.1|1.638e-1624.12hypothetical protein F442_06968 [Phytophthora para... [more]
gi|675189207|ref|XP_008903488.1|1.699e-1624.12hypothetical protein PPTG_09995 [Phytophthora para... [more]
gi|570329918|gb|ETO77866.1|1.950e-1624.32hypothetical protein F444_06998 [Phytophthora para... [more]
gi|568051904|gb|ETM48799.1|2.452e-1624.70hypothetical protein L914_06712 [Phytophthora para... [more]
gi|1160566201|ref|XP_020428762.1|1.513e-1522.38dynactin 50 kDa subunit [Polysphondylium pallidum ... [more]
gi|325185843|emb|CCA20349.1|1.800e-1523.52conserved hypothetical protein [Albugo laibachii N... [more]
gi|831772735|ref|XP_012753695.1|2.580e-1521.71hypothetical protein SAMD00019534_064210 [Acytoste... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6698rna6698Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications