rna6697, rna6697 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna6697
Unique Name	rna6697
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1233
Alignment location	CM002469.1:283952..286231 +

Link to JBrowse

Properties


Property Name	Value
Product	t-complex protein 1 subunit epsilon
Orig transcript id	gnl\|cribi\|Naga_100027g2.151.mrna
Orig protein id	gnl\|cribi\|Naga_100027g2.151
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002469.1	supercontig	CM002469.1:283952..286231 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100027g2	gene6475	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna6697	rna6697-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM23973.1	cds6681	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002469.1:283952..286231+
coding sequence from alignment at CM002469.1:283952..286231+

mRNA sequence

>rna6697 ID=rna6697|Name=rna6697|organism=Nannochloropsis gaditana|type=mRNA|length=1233bp
ACGCGCGAAAGGGGAGCAGGGAGAAAATGACAAGCTATTAATGGCACACA
CGGTGCAGAATCGTGAAGTTTTGATTCGATGTGCCTTTTTGGGTTGTGAG
AGGTTGTCTCACGTGGCCATGTTGTTTACGGGGGGTAAGGAGGCCTTTCG
ATCATCGTAGGAGGCCGGGCAGCTTCAACTCTCTTCATGTCCGCACGCTC
TAGGCGAACTAATTCCAGCGGACTTCCACAGGAAAAATTAGTTGTGAGTA
CTGCGTTTGGCTCCATATACTCTTGTGGGTCGGTTGAGGTGGAAGAGGGG
CGGAAAGCGGTCGAGGTGAGGTTCTTGGTGGCGCAAATTTCTTCGACGAC
GCATCAGCAAAGAACGAGATCAGGTCCATTATGACACCCAACGAAATACG
TGCAGCAGTCCTTCATTTATACCGAAACTGTCTACGGTCCGCCCGGCGTA
TACCTACACAAGAGCAACGCGAAATATGGCTAGCCTACACTCGCGGCAAA
TTTAAAGAAAACAGGCGGATAACCGACGTGCGTCTGAAGCGCGCCTTCCA
AGACGGCCAGGAGCAGCTATCTCGCATGAATTACTTCCATGACGTACGAA
ACAGGCAGATCGGAAGTCCGCATGGAGGGAACGGAGGGCCTCGACGTCAT
CCTCGACAAGGGGCCGGGGGCGCTGCCGCCCCTGCCTCCTCTGGCGGGGA
GCATGCGCCTCTCCCCGCGGGCTCCTCTCCGGAGGCTTCTTGGTCTTTGA
AAGCCTTCCTGGAGACGCACCTTCCAGGAGTCAGCCGCGAAGAATTGCGG
CAATACCAAAGATGCTTGGAGGCCGACGGCTTTGGGAGCGCGGGCATGCT
CAAGTTTCTCCGGGAGGAGGATCTGGGGGGCTGGAAGACTGCGCATCGGC
GTGCCATGCTGGACGCGCTCAGCAGGCTGAGGAAGGGGAAGGGGAAAGGG
GGGAGGACACAGGCGTGGGTGACACTGGCCGAGCCCCGTAGGAAATAATC
GAATGGGCGGGCGGGGGCTGTGCCGTGCATTGTACATAAATTGCCATAAG
AGCCACAAGAGCGGGACTGAGCAGTAATGTCGCACCCCCCTCCTCAGGGT
GGGGATACCGCGAGCAAGACGCGAGGGCTCTACGCGTACGTTTTCTTTGT
TCGGTCCCAGCTTTTCCCCTCCCCCACCCCCCCATCCTCCTCTTTGGCCT
GGCAACGGCTGTGGCCGGCTCCCACGAACCCCA

protein sequence of rna6697

>rna6697-protein ID=rna6697-protein|Name=rna6697|organism=Nannochloropsis gaditana|type=polypeptide|length=536bp
MSLVFDEYGRPFIILREQQAQNRLKGLEAQKSNIMAARSVSQILRTSFGP
KGMDKMLVNSDGDVTISNDGATILQKMDVEHQVARLLVELSQSQDEEIGD
GTTGVVVLAGALLEQAEKLLDRGLHPVRMAEGFEKACQLAMAHLETIADS
VSFGRENIEPLYDTAMTTLSSKIVNIHKSKMARIAVDAVLSVADLERKDV
NFDMIKVEGKPGGRLEDTELVRGIVVDKEISHPQMPKTIKDAKIAILTCP
FEPPKPKTKHKLDISSREAYERLYEREQEYFTTMVRQCKDSGANLIICQW
GFDDEANHLLLQNQLPAVRWVGGVELELIAIATGGRIVPRFSELSPEKLG
RAGLVREVAFGTTKERMLVIEDCAKSQAVTILVRGGNKMIVEEAKRSLHD
AMCVVRNLIKDNRIVYGGGSAEISCSIAVAKAADTETGVDQYAIRAFADA
LDDVPMALAENAGLSPITELSQVKSQQIKDGNPHIGVDCMQSGVADMRTQ
RIFETLIGKQQQFQLATQLVRMVLKIDDVLMHGNFQ

mRNA from alignment at CM002469.1:283952..286231+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna6697 ID=rna6697|Name=rna6697|organism=Nannochloropsis gaditana|type=mRNA|length=2280bp|location=Sequence derived from alignment at CM002469.1:283952..286231+ (Nannochloropsis gaditana)
TGCCGAAATTGACACCGTGCTGCGCGTGGGAGCTGATGCCATAGTGTCGC
GTTACTAATTGAAAGAGATTTGCATTGAACATTTCTCACCTACTGCCACC
CGTGATGACAGATCGTCGCTCAGAGCTCTCCAGGCGAAAAGAAGGGGTCT
CGCCTTCGTACACGTAGAACAAAACCCAGAAAACAGCTCACGACAAGTCA
TCAAGCCATGTCTCTCGTATTCGATGAGTATGGTCGACCGTTCATTATTC
TTCGTGAGCAGCAGGCACAAAATCGGCTGAAAGGCTTGGAGGCTCAGAAG
GTATGTCGCAATTTTTGGAGTTTGTCGCGCCTGCGATGTGACGTAAATCC
GACACCCCTGCGTGCAAACAGTGTTCTCGTTGCTGACCGCCATTATTATT
ATTCGATAGATCAATGTCATACATGCATTTCGAAGGTACATGTTGGATAT
TTGCTTTCAATATTCGTGTTGAGGAATGCGCTTTGTCCGTCTCCCATGGG
GAGTAACTCCGCGTCACTGCAGTCTTGCGATGGAGACTCCTTGGTACCAC
GCACAGATGATCGAAACGCCGATGCCATAAAATAATTCGTTGCTTTCATT
TCATATTCCCTTGTTGCTGTCTCATTCCTGCCCGCAGTCCAATATCATGG
CCGCCCGCTCCGTCTCGCAGATTCTTCGCACCTCCTTCGGCCCCAAGGGA
ATGGATAAGATGCTCGTCAACTCGGACGGAGACGTGACCATATCCAACGA
CGGTGCTACCATCCTGCAgaagatggacgtggagcaCCAAgtcgcccgcc
tcctggtCGAACTCTCCCAGTcccaggacgaggagatcgGGGACGGGACG
ACcggggtggtggtgttggCGGGGGCGCTCTTGGAGCAGGCCGAGAAGCT
GCTGGACAGAGGCCTTCATCCTGTGCGCATGGCGGAGGGCTTCGAAAAGG
CCTGCCAGCTGGCAATGGCCCACCTGGAGACTATCGCGGACAGCGTCAGC
TTCGGGCGCGAGAACATCGAGCCCCTGTACGATACGGCCATGACCACGCT
CAGTTCTAAGATAGTCAACATCCATAAGTCCAAGATGGCGCGCATCGCCG
TGGACGCCGTCTTGAGCGTGGCGGATTTGGAGCGGAAGGACGTGAACTTC
GACATGatcaaggtggagggaaagccagGGGGCCGGCTGGAGGACACGGA
GCTGGTCCGGGGCATCGtcgtggacaaggagatcTCGCACCCCCAGATGC
CCAAGACGATCAAAGACGCCAAGATCGCCATCCTCACCTGCCCCTTCGAG
CCCCCCAAGCCCAAGACCAAGCACAAGCTGGACATATCCTCCCGGGAGGC
CTACGAACGCCTGTACGAGCGCGAGCAGGAGTATTTTACCACCATGGTCC
GACAGTGCAAGGACTCGGGCGCCAACCTGATCATTTGTCAGTGGGGATTC
GACGACGAGGCGAACCATCTGCTTCTCCAGAACCAACTCCCGGCCGTCCG
CTGGGTCGGTGGCGTGGAGCTGGAGCTCATTGCCATCGCCACTGGTGGGA
GGATCGTTCCGCGCTTTTCCGAGCTGTCCCCCGAAAAattggggagggcg
gggctggTCAGGGAGGTGGCCTTCGGGACCACCAAGGAGCGCATGCTGGT
GATCGAGGACTGCGCAAAGTCCCAGGCCGTGACGATCTTGGTCCGGGGAG
GGAACAAGATgatcgtggaggaggcgaagcgtTCCCTGCACGATGCCATG
TGCGTGGTGCGCAACTTGATCAAGGACAACCGCATCGTCTACGGAGGGGG
CTCGGCGGAGATTTCCTGCTCTATCGCAGTGGCGAAAGCAGCGGACACAG
AGACGGGGGTGGACCAATACGCCATCCGCGCTTTTGCCGACGCCCTCGAC
GACGTGCCCATGGCGTTGGCGGAAAATGCTGGCCTCTCTCCCATTACAGA
ACTGAGTCAGGTGAAGTCGCAGCAGATCAAGGACGGCAATCCTCACATTG
GGGTGGATTGTATGCAATCGGGAGTTGCAGACATGCGCACCCAACGAATT
TTTGAAACCTTGATTGGAAAGCAGCAACAATTTCAATTGGCTACCCAGCT
TGTGCGGATGGTTTTGAAAATCGACGATGTGCTTATGCATGGGAACTTTC
AGTAAAGAACAAGTTTCGACAAGAGAAAGACCGCACAAATTTAAAGGGCA
AAGGGCGCAGAACGGGGGGTAACGGGGAGGTTGCGCTTAATAGCCTCTGG
ATAAAGAACAAGTATCGATAGCCATCGAGT

Coding sequence (CDS) from alignment at CM002469.1:283952..286231+

>rna6697 ID=rna6697|Name=rna6697|organism=Nannochloropsis gaditana|type=CDS|length=3222bp|location=Sequence derived from alignment at CM002469.1:283952..286231+ (Nannochloropsis gaditana)
ATGTCTCTCGTATTCGATGAGTATGGTCGACCGTTCATTATTCTTCGTGA
GCAGCAGGCACAAAATCGGCTGAAAGGCTTGGAGGCTCAGAAGTCCAATA
TCATGGCCGCCCGCTCCGTCTCGCAGATTCTTCGCACCTCCTTCGGCCCC
AAGGGAATGGATAAGATGCTCGTCAACTCGGACGGAGACGTGACCATATC
CAACGACGGTGCTACCATCCTGCAgaagatggacgtggagcaCCAAgtcg
cccgcctcctggtCGAACTCTCCCAGTcccaggacgaggagatcgGGGAC
GGGACGACcggggtggtggtgttggCGGGGGCGCTCTTGGAGCAGGCCGA
GAAGCTGCTGGACAGAGGCCTTCATCCTGTGCGCATGGCGGAGGGCTTCG
AAAAGGCCTGCCAGCTGGCAATGGCCCACCTGGAGACTATCGCGGACAGC
GTCAGCTTCGGGCGCGAGAACATCGAGCCCCTGTACGATACGGCCATGAC
CACGCTCAGTTCTAAGATAGTCAACATCCATAAGTCCAAGATGGCGCGCA
TCGCCGTGGACGCCGTCTTGAGCGTGGCGGATTTGGAGCGGAAGGACGTG
AACTTCGACATGatcaaggtggagggaaagccagGGGGCCGGCTGGAGGA
CACGGAGCTGGTCCGGGGCATCGtcgtggacaaggagatcTCGCACCCCC
AGATGCCCAAGACGATCAAAGACGCCAAGATCGCCATCCTCACCTGCCCC
TTCGAGCCCCCCAAGCCCAAGACCAAGCACAAGCTGGACATATCCTCCCG
GGAGGCCTACGAACGCCTGTACGAGCGCGAGCAGGAGTATTTTACCACCA
TGGTCCGACAGTGCAAGGACTCGGGCGCCAACCTGATCATTTGTCAGTGG
GGATTCGACGACGAGGCGAACCATCTGCTTCTCCAGAACCAACTCCCGGC
CGTCCGCTGGGTCGGTGGCGTGGAGCTGGAGCTCATTGCCATCGCCACTG
GTGGGAGGATCGTTCCGCGCTTTTCCGAGCTGTCCCCCGAAAAattgggg
agggcggggctggTCAGGGAGGTGGCCTTCGGGACCACCAAGGAGCGCAT
GCTGGTGATCGAGGACTGCGCAAAGTCCCAGGCCGTGACGATCTTGGTCC
GGGGAGGGAACAAGATgatcgtggaggaggcgaagcgtTCCCTGCACGAT
GCCATGTGCGTGGTGCGCAACTTGATCAAGGACAACCGCATCGTCTACGG
AGGGGGCTCGGCGGAGATTTCCTGCTCTATCGCAGTGGCGAAAGCAGCGG
ACACAGAGACGGGGGTGGACCAATACGCCATCCGCGCTTTTGCCGACGCC
CTCGACGACGTGCCCATGGCGTTGGCGGAAAATGCTGGCCTCTCTCCCAT
TACAGAACTGAGTCAGGTGAAGTCGCAGCAGATCAAGGACGGCAATCCTC
ACATTGGGGTGGATTGTATGCAATCGGGAGTTGCAGACATGCGCACCCAA
CGAATTTTTGAAACCTTGATTGGAAAGCAGCAACAATTTCAATTGGCTAC
CCAGCTTGTGCGGATGGTTTTGAAAATCGACGATGTGCTTATGCATGGGA
ACTTTCAGTAAATGTCTCTCGTATTCGATGAGTATGGTCGACCGTTCATT
ATTCTTCGTGAGCAGCAGGCACAAAATCGGCTGAAAGGCTTGGAGGCTCA
GAAGTCCAATATCATGGCCGCCCGCTCCGTCTCGCAGATTCTTCGCACCT
CCTTCGGCCCCAAGGGAATGGATAAGATGCTCGTCAACTCGGACGGAGAC
GTGACCATATCCAACGACGGTGCTACCATCCTGCAgaagatggacgtgga
gcaCCAAgtcgcccgcctcctggtCGAACTCTCCCAGTcccaggacgagg
agatcgGGGACGGGACGACcggggtggtggtgttggCGGGGGCGCTCTTG
GAGCAGGCCGAGAAGCTGCTGGACAGAGGCCTTCATCCTGTGCGCATGGC
GGAGGGCTTCGAAAAGGCCTGCCAGCTGGCAATGGCCCACCTGGAGACTA
TCGCGGACAGCGTCAGCTTCGGGCGCGAGAACATCGAGCCCCTGTACGAT
ACGGCCATGACCACGCTCAGTTCTAAGATAGTCAACATCCATAAGTCCAA
GATGGCGCGCATCGCCGTGGACGCCGTCTTGAGCGTGGCGGATTTGGAGC
GGAAGGACGTGAACTTCGACATGatcaaggtggagggaaagccagGGGGC
CGGCTGGAGGACACGGAGCTGGTCCGGGGCATCGtcgtggacaaggagat
cTCGCACCCCCAGATGCCCAAGACGATCAAAGACGCCAAGATCGCCATCC
TCACCTGCCCCTTCGAGCCCCCCAAGCCCAAGACCAAGCACAAGCTGGAC
ATATCCTCCCGGGAGGCCTACGAACGCCTGTACGAGCGCGAGCAGGAGTA
TTTTACCACCATGGTCCGACAGTGCAAGGACTCGGGCGCCAACCTGATCA
TTTGTCAGTGGGGATTCGACGACGAGGCGAACCATCTGCTTCTCCAGAAC
CAACTCCCGGCCGTCCGCTGGGTCGGTGGCGTGGAGCTGGAGCTCATTGC
CATCGCCACTGGTGGGAGGATCGTTCCGCGCTTTTCCGAGCTGTCCCCCG
AAAAattggggagggcggggctggTCAGGGAGGTGGCCTTCGGGACCACC
AAGGAGCGCATGCTGGTGATCGAGGACTGCGCAAAGTCCCAGGCCGTGAC
GATCTTGGTCCGGGGAGGGAACAAGATgatcgtggaggaggcgaagcgtT
CCCTGCACGATGCCATGTGCGTGGTGCGCAACTTGATCAAGGACAACCGC
ATCGTCTACGGAGGGGGCTCGGCGGAGATTTCCTGCTCTATCGCAGTGGC
GAAAGCAGCGGACACAGAGACGGGGGTGGACCAATACGCCATCCGCGCTT
TTGCCGACGCCCTCGACGACGTGCCCATGGCGTTGGCGGAAAATGCTGGC
CTCTCTCCCATTACAGAACTGAGTCAGGTGAAGTCGCAGCAGATCAAGGA
CGGCAATCCTCACATTGGGGTGGATTGTATGCAATCGGGAGTTGCAGACA
TGCGCACCCAACGAATTTTTGAAACCTTGATTGGAAAGCAGCAACAATTT
CAATTGGCTACCCAGCTTGTGCGGATGGTTTTGAAAATCGACGATGTGCT
TATGCATGGGAACTTTCAGTAA

Synonyms

Publications