EWM23973.1, cds6681 (CDS) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	EWM23973.1
Unique Name	cds6681
Type	CDS
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Alignment location	CM002469.1:284159..284251 +
Alignment location	CM002469.1:284589..286106 +

Link to JBrowse

Properties


Property Name	Value
Protein id	EWM23973.1
Product	t-complex protein 1 subunit epsilon
Orig transcript id	gnl\|cribi\|Naga_100027g2.151.mrna
Gbkey	CDS

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002469.1	supercontig	CM002469.1:284159..284251 +
CM002469.1	supercontig	CM002469.1:284589..286106 +

Analyses

This CDS is derived from or has results from the following analyses


Analysis Name	Date Performed
GO annotation for N. gaditana B31	2020-04-08
BLAST analysis for N. gaditana B-31	2020-04-07
InterPro analysis for N. gaditana B-31	2020-04-06
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

The following terms have been associated with this CDS:

Vocabulary: **Biological Process**
Term	Definition
GO:0009987	cellular process
GO:0006457	protein folding

Vocabulary: **Cellular Component**
Term	Definition
GO:0005737	cytoplasm

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding
GO:0000166	nucleotide binding
GO:0051082	unfolded protein binding
GO:0005524	ATP binding

Vocabulary: **INTERPRO**
Term	Definition
IPR002194	Chaperonin_TCP-1_CS
IPR012718	Chap_CCT_epsi
IPR027409	GroEL-like_apical_dom
IPR002423	Cpn60/TCP-1
IPR027413	GROEL-like_equatorial
IPR027410	TCP-1-like_intermed
IPR017998	Chaperone_TCP-1

Homology

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BLAST of EWM23973.1 vs. NCBI_GenBank
Match: gi|585105259|gb|EWM23973.1| (t-complex protein 1 subunit epsilon [Nannochloropsis gaditana])

HSP 1 Score: 1102.81 bits (2851), Expect = 0.000e+0
Identity = 536/536 (100.00%), Postives = 536/536 (100.00%), Query Frame = 0

Query:    1 MSLVFDEYGRPFIILREQQAQNRLKGLEAQKSNIMAARSVSQILRTSFGPKGMDKMLVNSDGDVTISNDGATILQKMDVEHQVARLLVELSQSQDEEIGDGTTGVVVLAGALLEQAEKLLDRGLHPVRMAEGFEKACQLAMAHLETIADSVSFGRENIEPLYDTAMTTLSSKIVNIHKSKMARIAVDAVLSVADLERKDVNFDMIKVEGKPGGRLEDTELVRGIVVDKEISHPQMPKTIKDAKIAILTCPFEPPKPKTKHKLDISSREAYERLYEREQEYFTTMVRQCKDSGANLIICQWGFDDEANHLLLQNQLPAVRWVGGVELELIAIATGGRIVPRFSELSPEKLGRAGLVREVAFGTTKERMLVIEDCAKSQAVTILVRGGNKMIVEEAKRSLHDAMCVVRNLIKDNRIVYGGGSAEISCSIAVAKAADTETGVDQYAIRAFADALDDVPMALAENAGLSPITELSQVKSQQIKDGNPHIGVDCMQSGVADMRTQRIFETLIGKQQQFQLATQLVRMVLKIDDVLMHGNFQ 536
            MSLVFDEYGRPFIILREQQAQNRLKGLEAQKSNIMAARSVSQILRTSFGPKGMDKMLVNSDGDVTISNDGATILQKMDVEHQVARLLVELSQSQDEEIGDGTTGVVVLAGALLEQAEKLLDRGLHPVRMAEGFEKACQLAMAHLETIADSVSFGRENIEPLYDTAMTTLSSKIVNIHKSKMARIAVDAVLSVADLERKDVNFDMIKVEGKPGGRLEDTELVRGIVVDKEISHPQMPKTIKDAKIAILTCPFEPPKPKTKHKLDISSREAYERLYEREQEYFTTMVRQCKDSGANLIICQWGFDDEANHLLLQNQLPAVRWVGGVELELIAIATGGRIVPRFSELSPEKLGRAGLVREVAFGTTKERMLVIEDCAKSQAVTILVRGGNKMIVEEAKRSLHDAMCVVRNLIKDNRIVYGGGSAEISCSIAVAKAADTETGVDQYAIRAFADALDDVPMALAENAGLSPITELSQVKSQQIKDGNPHIGVDCMQSGVADMRTQRIFETLIGKQQQFQLATQLVRMVLKIDDVLMHGNFQ
Sbjct:    1 MSLVFDEYGRPFIILREQQAQNRLKGLEAQKSNIMAARSVSQILRTSFGPKGMDKMLVNSDGDVTISNDGATILQKMDVEHQVARLLVELSQSQDEEIGDGTTGVVVLAGALLEQAEKLLDRGLHPVRMAEGFEKACQLAMAHLETIADSVSFGRENIEPLYDTAMTTLSSKIVNIHKSKMARIAVDAVLSVADLERKDVNFDMIKVEGKPGGRLEDTELVRGIVVDKEISHPQMPKTIKDAKIAILTCPFEPPKPKTKHKLDISSREAYERLYEREQEYFTTMVRQCKDSGANLIICQWGFDDEANHLLLQNQLPAVRWVGGVELELIAIATGGRIVPRFSELSPEKLGRAGLVREVAFGTTKERMLVIEDCAKSQAVTILVRGGNKMIVEEAKRSLHDAMCVVRNLIKDNRIVYGGGSAEISCSIAVAKAADTETGVDQYAIRAFADALDDVPMALAENAGLSPITELSQVKSQQIKDGNPHIGVDCMQSGVADMRTQRIFETLIGKQQQFQLATQLVRMVLKIDDVLMHGNFQ 536

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BLAST of EWM23973.1 vs. NCBI_GenBank
Match: gi|298705368|emb|CBJ28658.1| (T-complex protein, epsilon subunit [Ectocarpus siliculosus])

HSP 1 Score: 900.197 bits (2325), Expect = 0.000e+0
Identity = 421/536 (78.54%), Postives = 483/536 (90.11%), Query Frame = 0

Query:    1 MSLVFDEYGRPFIILREQQAQNRLKGLEAQKSNIMAARSVSQILRTSFGPKGMDKMLVNSDGDVTISNDGATILQKMDVEHQVARLLVELSQSQDEEIGDGTTGVVVLAGALLEQAEKLLDRGLHPVRMAEGFEKACQLAMAHLETIADSVSFGRENIEPLYDTAMTTLSSKIVNIHKSKMARIAVDAVLSVADLERKDVNFDMIKVEGKPGGRLEDTELVRGIVVDKEISHPQMPKTIKDAKIAILTCPFEPPKPKTKHKLDISSREAYERLYEREQEYFTTMVRQCKDSGANLIICQWGFDDEANHLLLQNQLPAVRWVGGVELELIAIATGGRIVPRFSELSPEKLGRAGLVREVAFGTTKERMLVIEDCAKSQAVTILVRGGNKMIVEEAKRSLHDAMCVVRNLIKDNRIVYGGGSAEISCSIAVAKAADTETGVDQYAIRAFADALDDVPMALAENAGLSPITELSQVKSQQIKDGNPHIGVDCMQSGVADMRTQRIFETLIGKQQQFQLATQLVRMVLKIDDVLMHGNFQ 536
            MS++FDEYGRPFIILREQQAQ R++G EAQK+NI+AARSVS ILR+S GPKGMDKMLV+ DGDVTISNDGATIL KM VEHQVARLLVELSQSQD+EIGDGTTGVVV+AGALLEQAEKLLDRG+HPVR+ EGF++ACQ A+ HLE IAD+V F R+N EPL  TAMTTLSSKI+N+HK KMA+IAVDAV++VA+LER DVNFDMIKV+GKPGG L DTEL+ GIV+DKE SH QMPK +KDAK+ +LTCPFEPPKPKTKHKLDI+S++AYE+L+EREQ+YF  MV+QCKD G NL+ICQWGFDDEANHLLLQNQLPAVRWVGGVELELIAIATG RIVPRFSEL+ EKLG+AG VREV+FGTTK+RMLVIEDC+ S AVT+LVRGGNKMIVEEAKRSLHDAMCVVRNLIKD RIVYGGGSAEISCS+AV++ AD   GV+QYA+R+FADALDDVPMALAEN+GLSPITELS VKS+QI +G   +G+DC Q G  DM+ Q IFETLIGKQQQ  LATQ+V+M+LK+DDV+M GN++
Sbjct:    1 MSMIFDEYGRPFIILREQQAQARIRGKEAQKTNILAARSVSNILRSSLGPKGMDKMLVSPDGDVTISNDGATILDKMQVEHQVARLLVELSQSQDDEIGDGTTGVVVMAGALLEQAEKLLDRGIHPVRIGEGFDRACQTAVEHLEKIADAVEFSRDNTEPLVTTAMTTLSSKIINVHKQKMAKIAVDAVMAVANLERNDVNFDMIKVDGKPGGELGDTELIHGIVIDKEFSHAQMPKVVKDAKLCLLTCPFEPPKPKTKHKLDITSKDAYEKLFEREQKYFADMVQQCKDVGTNLVICQWGFDDEANHLLLQNQLPAVRWVGGVELELIAIATGARIVPRFSELTGEKLGKAGAVREVSFGTTKDRMLVIEDCSNSSAVTVLVRGGNKMIVEEAKRSLHDAMCVVRNLIKDKRIVYGGGSAEISCSVAVSRMADEIKGVEQYAVRSFADALDDVPMALAENSGLSPITELSAVKSRQIAEGITSLGIDCNQVGTCDMKEQGIFETLIGKQQQLLLATQVVKMILKVDDVIMMGNYE 536

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BLAST of EWM23973.1 vs. NCBI_GenBank
Match: gi|676386379|ref|XP_009036468.1| (hypothetical protein AURANDRAFT_26043 [Aureococcus anophagefferens] >gi|323452581|gb|EGB08454.1| hypothetical protein AURANDRAFT_26043 [Aureococcus anophagefferens])

HSP 1 Score: 893.264 bits (2307), Expect = 0.000e+0
Identity = 420/536 (78.36%), Postives = 488/536 (91.04%), Query Frame = 0

Query:    1 MSLVFDEYGRPFIILREQQAQNRLKGLEAQKSNIMAARSVSQILRTSFGPKGMDKMLVNSDGDVTISNDGATILQKMDVEHQVARLLVELSQSQDEEIGDGTTGVVVLAGALLEQAEKLLDRGLHPVRMAEGFEKACQLAMAHLETIADSVSFGR-ENIEPLYDTAMTTLSSKIVNIHKSKMARIAVDAVLSVADLERKDVNFDMIKVEGKPGGRLEDTELVRGIVVDKEISHPQMPKTIKDAKIAILTCPFEPPKPKTKHKLDISSREAYERLYEREQEYFTTMVRQCKDSGANLIICQWGFDDEANHLLLQNQLPAVRWVGGVELELIAIATGGRIVPRFSELSPEKLGRAGLVREVAFGTTKERMLVIEDCAKSQAVTILVRGGNKMIVEEAKRSLHDAMCVVRNLIKDNRIVYGGGSAEISCSIAVAKAADTETGVDQYAIRAFADALDDVPMALAENAGLSPITELSQVKSQQIKDGNPHIGVDCMQSGVADMRTQRIFETLIGKQQQFQLATQLVRMVLKIDDVLMHGNF 535
            MS+VFDEYGRPFIIL+EQQ ++R+KGLEAQK NIMAARSVS ILRTS GPKGMDKM+V+ DGD+TI+NDGATIL KM VEHQVARLLVELSQSQD+EIGDGTTGVVVLAG+LLEQAEKLLD+GLHPVR+AEGFE AC++AM  L  +AD+V+F + ++ + L +TAMTTLSSKI+N+HK KMA+IAVDAV+SVAD++R DVNFDMIK+EGKPGGRLE+TEL++GIV+DK+ISHPQM K IKDAK+ ILTCPFEPPKPKTKHKLDI+S+E Y++L+ REQ YF  MV QCK  GAN++ICQWGFDDEANHLLLQ  LPAVRWVGGVELELIAIATGGRIV RFSELS  KLG+AG VREVAFGTTKERMLVIEDCA S+AVT+LVRGGNKMIVEEAKRSLHDAMCVVRNL+KDNRIVYGGG+AEI+CSIAV+KAAD  TG DQYAIRAFADALDDVPMALAEN+GLSPITEL+ VK++Q+ + NP++GVDC+Q G  DM+ Q++FETLIGKQQQ QLATQ+V+M+LKIDDV+MHG++
Sbjct:    1 MSMVFDEYGRPFIILKEQQQKSRIKGLEAQKHNIMAARSVSNILRTSLGPKGMDKMMVSPDGDITITNDGATILDKMAVEHQVARLLVELSQSQDDEIGDGTTGVVVLAGSLLEQAEKLLDKGLHPVRIAEGFETACKVAMKTLGDVADTVAFDKTKDDKVLVETAMTTLSSKIINVHKRKMAQIAVDAVMSVADVDRNDVNFDMIKMEGKPGGRLEETELIKGIVIDKDISHPQMAKEIKDAKMCILTCPFEPPKPKTKHKLDITSKEDYDKLFAREQHYFKEMVAQCKACGANMVICQWGFDDEANHLLLQAGLPAVRWVGGVELELIAIATGGRIVARFSELSEAKLGKAGCVREVAFGTTKERMLVIEDCASSEAVTVLVRGGNKMIVEEAKRSLHDAMCVVRNLVKDNRIVYGGGAAEIACSIAVSKAADDATGQDQYAIRAFADALDDVPMALAENSGLSPITELTAVKAKQLAEKNPNLGVDCLQQGTNDMKQQKVFETLIGKQQQVQLATQVVKMILKIDDVIMHGSY 536

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BLAST of EWM23973.1 vs. NCBI_GenBank
Match: gi|676394089|ref|XP_009040322.1| (hypothetical protein AURANDRAFT_54967 [Aureococcus anophagefferens] >gi|323449077|gb|EGB04968.1| hypothetical protein AURANDRAFT_54967 [Aureococcus anophagefferens])

HSP 1 Score: 889.412 bits (2297), Expect = 0.000e+0
Identity = 420/536 (78.36%), Postives = 489/536 (91.23%), Query Frame = 0

Query:    1 MSLVFDEYGRPFIILREQQAQNRLKGLEAQKSNIMAARSVSQILRTSFGPKGMDKMLVNSDGDVTISNDGATILQKMDVEHQVARLLVELSQSQDEEIGDGTTGVVVLAGALLEQAEKLLDRGLHPVRMAEGFEKACQLAMAHLETIADSVSFGR-ENIEPLYDTAMTTLSSKIVNIHKSKMARIAVDAVLSVADLERKDVNFDMIKVEGKPGGRLEDTELVRGIVVDKEISHPQMPKTIKDAKIAILTCPFEPPKPKTKHKLDISSREAYERLYEREQEYFTTMVRQCKDSGANLIICQWGFDDEANHLLLQNQLPAVRWVGGVELELIAIATGGRIVPRFSELSPEKLGRAGLVREVAFGTTKERMLVIEDCAKSQAVTILVRGGNKMIVEEAKRSLHDAMCVVRNLIKDNRIVYGGGSAEISCSIAVAKAADTETGVDQYAIRAFADALDDVPMALAENAGLSPITELSQVKSQQIKDGNPHIGVDCMQSGVADMRTQRIFETLIGKQQQFQLATQLVRMVLKIDDVLMHGNF 535
            MS+VFDEYGRPFIIL+EQQ ++R+KGLEAQK NIMAARSVS ILRTS GPKGMDKM+V+ DGD+TI+NDGATIL KM VEHQVARLLVELSQSQD+EIGDGTTGVVVLAG+LLEQAEKLLD+GLHPVR+AEGFE AC++AM  L  +AD+V+F + ++ + L +TAMTTLSSKI+N+HK KMA+IAVDAV+SVAD++R DVNFDMIK+EGKPGGRLE+TEL++GIV+DK+ISHPQM K IKDAK+ ILTCPFEPPKPKTKHKLDI+S+E Y++L+ REQ YFT MV QCK  GAN++ICQWGFDDEANHLLLQ  LPAVRWVGGVELELIAIATGGRIV RFSELS  KLG+AG VREVAFGTTKERMLVIEDCA S+AVT+LVRGGNKMIVEEAKRSLHDAMCVVRNL+KDNRIVYGGG+AEI+CSIAV++AAD  TG DQYAIRAFADALDDVPMALAEN+GLSPITEL+ VK++Q+ + NP++GVDC+Q G  DM+ Q++FETLIGKQQQ QLATQ+V+M+LKIDDV+MHG++
Sbjct:  109 MSMVFDEYGRPFIILKEQQQKSRIKGLEAQKHNIMAARSVSNILRTSLGPKGMDKMMVSPDGDITITNDGATILDKMAVEHQVARLLVELSQSQDDEIGDGTTGVVVLAGSLLEQAEKLLDKGLHPVRIAEGFETACKVAMKTLGDVADTVAFDKTKDDKVLVETAMTTLSSKIINVHKRKMAQIAVDAVMSVADVDRNDVNFDMIKMEGKPGGRLEETELIKGIVIDKDISHPQMAKEIKDAKMCILTCPFEPPKPKTKHKLDITSKEDYDKLFAREQHYFTEMVAQCKACGANMVICQWGFDDEANHLLLQAGLPAVRWVGGVELELIAIATGGRIVARFSELSEAKLGKAGCVREVAFGTTKERMLVIEDCASSEAVTVLVRGGNKMIVEEAKRSLHDAMCVVRNLVKDNRIVYGGGAAEIACSIAVSQAADDATGQDQYAIRAFADALDDVPMALAENSGLSPITELTAVKAKQLAEKNPNLGVDCLQQGTNDMKQQKVFETLIGKQQQVQLATQVVKMILKIDDVIMHGSY 644

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BLAST of EWM23973.1 vs. NCBI_GenBank
Match: gi|695468690|ref|XP_009539930.1| (hypothetical protein PHYSODRAFT_566801 [Phytophthora sojae] >gi|348664799|gb|EGZ04639.1| hypothetical protein PHYSODRAFT_566801 [Phytophthora sojae])

HSP 1 Score: 871.692 bits (2251), Expect = 0.000e+0
Identity = 405/535 (75.70%), Postives = 477/535 (89.16%), Query Frame = 0

Query:    1 MSLVFDEYGRPFIILREQQAQNRLKGLEAQKSNIMAARSVSQILRTSFGPKGMDKMLVNSDGDVTISNDGATILQKMDVEHQVARLLVELSQSQDEEIGDGTTGVVVLAGALLEQAEKLLDRGLHPVRMAEGFEKACQLAMAHLETIADSVSFGRENIEPLYDTAMTTLSSKIVNIHKSKMARIAVDAVLSVADLERKDVNFDMIKVEGKPGGRLEDTELVRGIVVDKEISHPQMPKTIKDAKIAILTCPFEPPKPKTKHKLDISSREAYERLYEREQEYFTTMVRQCKDSGANLIICQWGFDDEANHLLLQNQLPAVRWVGGVELELIAIATGGRIVPRFSELSPEKLGRAGLVREVAFGTTKERMLVIEDCAKSQAVTILVRGGNKMIVEEAKRSLHDAMCVVRNLIKDNRIVYGGGSAEISCSIAVAKAADTETGVDQYAIRAFADALDDVPMALAENAGLSPITELSQVKSQQIKDGNPHIGVDCMQSGVADMRTQRIFETLIGKQQQFQLATQLVRMVLKIDDVLMHGNF 535
            MS+VFDEYGRPFIILR+Q+ + R+KG+EA KSNI+AAR+VS +LRTS GP+GMDKM+V+ DGDVTISNDGATIL++M VEH+VA LLVELS+SQD+EIGDGTTGVVVLAGALLEQAEKLL  GLHP+R+A+GFE+AC++A  HLE I D + F  E+  PL +TAMTTLSSKIVN +K +MA+IAVDAV+ VA+ E +DVNFD+IK+EGKPGG L +T L+ GIV+DK+ SHPQMPK +KDAK+ ILTCPFEPPKPKTKHKLDI+S EAYE+LY++EQEYFTTM++Q KDSGANL+ICQWGFDDEANHLLLQNQLPAVRWVGGVELELIAIATGGRIVPRFSEL+PEKLGRAG VREVAFGTTKERMLVIEDCA S A+T+LVRGGNKMIVEEAKRSLHDAMCV RNLIK+NRIVYGGG+AEI+C IAV + AD   G++QYAIRAFADAL+DVPMALAEN+GLSPI  LS V++QQI + NP +G+DC  SG  DM+ Q++FETLIGKQQQ QLATQ+VRM+LKIDDV++ G++
Sbjct:    1 MSMVFDEYGRPFIILRDQEQKQRIKGVEAIKSNILAARTVSSLLRTSLGPRGMDKMMVSQDGDVTISNDGATILEQMQVEHRVAHLLVELSKSQDDEIGDGTTGVVVLAGALLEQAEKLLSNGLHPMRIADGFEEACEIACKHLEAIGDVIQFSEEDATPLVETAMTTLSSKIVNKYKRQMAQIAVDAVMKVANFETRDVNFDLIKMEGKPGGTLGETALINGIVIDKDFSHPQMPKEVKDAKMCILTCPFEPPKPKTKHKLDITSVEAYEKLYKQEQEYFTTMIKQVKDSGANLVICQWGFDDEANHLLLQNQLPAVRWVGGVELELIAIATGGRIVPRFSELTPEKLGRAGTVREVAFGTTKERMLVIEDCASSDAITVLVRGGNKMIVEEAKRSLHDAMCVTRNLIKNNRIVYGGGAAEIACGIAVREHADNTKGIEQYAIRAFADALEDVPMALAENSGLSPIDSLSAVRAQQIAEKNPRLGIDCNSSGTNDMKEQQVFETLIGKQQQLQLATQVVRMILKIDDVIIEGSY 535

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BLAST of EWM23973.1 vs. NCBI_GenBank
Match: gi|1214708035|gb|OWZ19361.1| (T-complex protein 1, epsilon subunit [Phytophthora megakarya])

HSP 1 Score: 866.3 bits (2237), Expect = 0.000e+0
Identity = 403/535 (75.33%), Postives = 476/535 (88.97%), Query Frame = 0

Query:    1 MSLVFDEYGRPFIILREQQAQNRLKGLEAQKSNIMAARSVSQILRTSFGPKGMDKMLVNSDGDVTISNDGATILQKMDVEHQVARLLVELSQSQDEEIGDGTTGVVVLAGALLEQAEKLLDRGLHPVRMAEGFEKACQLAMAHLETIADSVSFGRENIEPLYDTAMTTLSSKIVNIHKSKMARIAVDAVLSVADLERKDVNFDMIKVEGKPGGRLEDTELVRGIVVDKEISHPQMPKTIKDAKIAILTCPFEPPKPKTKHKLDISSREAYERLYEREQEYFTTMVRQCKDSGANLIICQWGFDDEANHLLLQNQLPAVRWVGGVELELIAIATGGRIVPRFSELSPEKLGRAGLVREVAFGTTKERMLVIEDCAKSQAVTILVRGGNKMIVEEAKRSLHDAMCVVRNLIKDNRIVYGGGSAEISCSIAVAKAADTETGVDQYAIRAFADALDDVPMALAENAGLSPITELSQVKSQQIKDGNPHIGVDCMQSGVADMRTQRIFETLIGKQQQFQLATQLVRMVLKIDDVLMHGNF 535
            MS+VFDEYGRPFIILR+Q+ + R+KG+EA KSNI+AAR+VS +LRTS GP+GMDKM+V+ DGDVTISNDGATIL++M VEH+VA LLVELS+SQD+EIGDGTTGVVVLAGALLEQAEKLL  GLHP+R+A+GFE+AC++A  HLE I D + F  ++  PL +TAMTTLSSKIVN +K +MA+IAVDAV+ VA+ E +DVNFD+IK+EGKPGG L +T L+ GIV+DK+ SHPQMPK +KDAK+ ILTCPFEPPKPKTKHKLDI+S E YE+LY++EQEYFTTM++Q KDSGANL+ICQWGFDDEANHLLLQNQLPAVRWVGGVELELIAIATGGRIVPRFSEL+ EKLGRAG VREVAFGTTKERMLVIEDCA S A+T+LVRGGNKMIVEEAKRSLHDAMCV RNLIK+NRIVYGGG+AEI+C IAV + AD  TG++QYAIRAFADAL+DVPMALAEN+GLSPI  LS V++QQI + NP +G+DC  SG  DM+ Q++FETLIGKQQQ QLATQ+VRM+LKIDDV++ G++
Sbjct:    1 MSMVFDEYGRPFIILRDQEQKERIKGVEAIKSNILAARTVSSLLRTSLGPRGMDKMMVSQDGDVTISNDGATILEQMQVEHRVAHLLVELSKSQDDEIGDGTTGVVVLAGALLEQAEKLLAHGLHPMRIADGFEEACEIACKHLEAIGDVIQFSEQDATPLVETAMTTLSSKIVNKYKRQMAQIAVDAVMKVANFETRDVNFDLIKMEGKPGGTLGETALINGIVIDKDFSHPQMPKEVKDAKMCILTCPFEPPKPKTKHKLDITSVEVYEKLYKQEQEYFTTMIKQVKDSGANLVICQWGFDDEANHLLLQNQLPAVRWVGGVELELIAIATGGRIVPRFSELTVEKLGRAGTVREVAFGTTKERMLVIEDCASSDAITVLVRGGNKMIVEEAKRSLHDAMCVTRNLIKNNRIVYGGGAAEIACGIAVREHADNTTGIEQYAIRAFADALEDVPMALAENSGLSPIDSLSAVRAQQISEKNPRLGIDCNSSGTNDMKEQQVFETLIGKQQQLQLATQVVRMILKIDDVIIEGSY 535

[Close]

BLAST of EWM23973.1 vs. NCBI_GenBank
Match: gi|301113382|ref|XP_002998461.1| (T-complex protein 1 subunit epsilon [Phytophthora infestans T30-4] >gi|262111762|gb|EEY69814.1| T-complex protein 1 subunit epsilon [Phytophthora infestans T30-4])

HSP 1 Score: 865.529 bits (2235), Expect = 0.000e+0
Identity = 403/535 (75.33%), Postives = 477/535 (89.16%), Query Frame = 0

Query:    1 MSLVFDEYGRPFIILREQQAQNRLKGLEAQKSNIMAARSVSQILRTSFGPKGMDKMLVNSDGDVTISNDGATILQKMDVEHQVARLLVELSQSQDEEIGDGTTGVVVLAGALLEQAEKLLDRGLHPVRMAEGFEKACQLAMAHLETIADSVSFGRENIEPLYDTAMTTLSSKIVNIHKSKMARIAVDAVLSVADLERKDVNFDMIKVEGKPGGRLEDTELVRGIVVDKEISHPQMPKTIKDAKIAILTCPFEPPKPKTKHKLDISSREAYERLYEREQEYFTTMVRQCKDSGANLIICQWGFDDEANHLLLQNQLPAVRWVGGVELELIAIATGGRIVPRFSELSPEKLGRAGLVREVAFGTTKERMLVIEDCAKSQAVTILVRGGNKMIVEEAKRSLHDAMCVVRNLIKDNRIVYGGGSAEISCSIAVAKAADTETGVDQYAIRAFADALDDVPMALAENAGLSPITELSQVKSQQIKDGNPHIGVDCMQSGVADMRTQRIFETLIGKQQQFQLATQLVRMVLKIDDVLMHGNF 535
            MS+VFDEYGRPFIILR+Q+ + R+KG+EA KSNI+AAR+VS +LRTS GP+GMDKM+V+ DGDVTISNDGATIL++M VEH+VA LLVELS+SQD+EIGDGTTGVVVLAGALLEQAEKLL  GLHP+R+A+GFE+AC++A  HLE I D + F +E+  PL +TAMTTLSSKIVN +K +MA+IAVDAV+ VA+ E +DVNFD+IKVEGKPGG L +T L+ GIV+DK+ SHPQMPK +KDAK+ ILTCPFEPPKPKTKHKLDI+S EAYE+LY++EQEYFTTM++Q KDSGANL+ICQWGFDDEANHLLLQ+QLPAVRWVGGVELELIAIATGGRIVPRFSEL+ EKLGRAG VREVAFGTTKERMLVIEDCA S A+T+LVRGGNKMIVEEAKRSLHDAMCV RNLIK+NRIVYGGG+AEI+C IAV + AD   G++QYAIR+FADAL+DVPMALAEN+GLSPI  LS V++QQI + NP +G+DC  SG  DM+ Q++FETLIGKQQQ QLATQ+VRM+LKIDDV++ G++
Sbjct:    1 MSMVFDEYGRPFIILRDQEQKERIKGVEAIKSNILAARTVSSLLRTSLGPRGMDKMMVSQDGDVTISNDGATILEQMQVEHRVAHLLVELSKSQDDEIGDGTTGVVVLAGALLEQAEKLLAHGLHPMRIADGFEEACEIACKHLEAIGDVIHFSKEDSTPLVETAMTTLSSKIVNKYKRQMAQIAVDAVMKVANFETRDVNFDLIKVEGKPGGTLGETALINGIVIDKDFSHPQMPKEVKDAKMCILTCPFEPPKPKTKHKLDITSVEAYEKLYKQEQEYFTTMIKQVKDSGANLVICQWGFDDEANHLLLQSQLPAVRWVGGVELELIAIATGGRIVPRFSELTAEKLGRAGTVREVAFGTTKERMLVIEDCASSDAITVLVRGGNKMIVEEAKRSLHDAMCVTRNLIKNNRIVYGGGAAEIACGIAVREHADNTEGIEQYAIRSFADALEDVPMALAENSGLSPIDSLSAVRAQQIAEKNPRLGIDCNSSGTNDMKEQQVFETLIGKQQQLQLATQVVRMILKIDDVIIEGSY 535

[Close]

BLAST of EWM23973.1 vs. NCBI_GenBank
Match: gi|675199791|ref|XP_008908780.1| (T-complex protein 1, epsilon subunit [Phytophthora parasitica INRA-310] >gi|566019491|gb|ETI42402.1| T-complex protein 1, epsilon subunit [Phytophthora parasitica P1569] >gi|567957194|gb|ETK82800.1| T-complex protein 1, epsilon subunit [Phytophthora parasitica] >gi|567985843|gb|ETL36178.1| T-complex protein 1, epsilon subunit [Phytophthora parasitica] >gi|568014885|gb|ETL89062.1| T-complex protein 1, epsilon subunit [Phytophthora parasitica] >gi|568045157|gb|ETM42315.1| T-complex protein 1, epsilon subunit [Phytophthora parasitica] >gi|568090890|gb|ETN05716.1| T-complex protein 1, epsilon subunit [Phytophthora parasitica INRA-310] >gi|570323082|gb|ETO71030.1| T-complex protein 1, epsilon subunit [Phytophthora parasitica P1976] >gi|570947262|gb|ETP12519.1| T-complex protein 1, epsilon subunit [Phytophthora parasitica CJ01A1] >gi|570979266|gb|ETP40244.1| T-complex protein 1, epsilon subunit [Phytophthora parasitica P10297] >gi|970630087|gb|KUF77140.1| T-complex protein 1 subunit epsilon [Phytophthora nicotianae])

HSP 1 Score: 862.062 bits (2226), Expect = 0.000e+0
Identity = 401/535 (74.95%), Postives = 475/535 (88.79%), Query Frame = 0

Query:    1 MSLVFDEYGRPFIILREQQAQNRLKGLEAQKSNIMAARSVSQILRTSFGPKGMDKMLVNSDGDVTISNDGATILQKMDVEHQVARLLVELSQSQDEEIGDGTTGVVVLAGALLEQAEKLLDRGLHPVRMAEGFEKACQLAMAHLETIADSVSFGRENIEPLYDTAMTTLSSKIVNIHKSKMARIAVDAVLSVADLERKDVNFDMIKVEGKPGGRLEDTELVRGIVVDKEISHPQMPKTIKDAKIAILTCPFEPPKPKTKHKLDISSREAYERLYEREQEYFTTMVRQCKDSGANLIICQWGFDDEANHLLLQNQLPAVRWVGGVELELIAIATGGRIVPRFSELSPEKLGRAGLVREVAFGTTKERMLVIEDCAKSQAVTILVRGGNKMIVEEAKRSLHDAMCVVRNLIKDNRIVYGGGSAEISCSIAVAKAADTETGVDQYAIRAFADALDDVPMALAENAGLSPITELSQVKSQQIKDGNPHIGVDCMQSGVADMRTQRIFETLIGKQQQFQLATQLVRMVLKIDDVLMHGNF 535
            MS+VFDEYGRPFIILR+Q+ + R+KG+EA KSNI+AAR+VS +LRTS GP+GMDKM+V+ DGDVTISNDGATIL++M VEH+VA LLVELS+SQD+EIGDGTTGVVVLAGALLEQAEKLL  GLHP+R+A+GFE+AC++A  HLE I D + F  E+  PL +TAMTTLSSKIVN +K +MA+IAVDAV+ VA+ E +DVNFD+IK+EGKPGG L +T L+ GIV+DK+ SHPQMPK +KDAK+ ILTCPFEPPKPKTKHK+DI+S EAYE+LY++EQEYFTTM++Q KDSGANL+ICQWGFDDEANHLLLQNQLPAVRWVGGVELELIAIATGGRIVPRFSEL+ EKLG AG VREVAFGTTKERMLVIEDCA S A+T+LVRGGNKMIVEEAKRSLHDAMCV RNLIK+NRIVYGGG+AEI+C IAV + AD  TG++QYAIR FADAL+DVPMALAEN+GL+PI  LS V++QQI + NP +G+DC  SG  DM+ Q++FETLIGKQQQ QLATQ+VRM+LKIDDV++ G++
Sbjct:    1 MSMVFDEYGRPFIILRDQEQKERIKGVEAIKSNILAARTVSSLLRTSLGPRGMDKMMVSQDGDVTISNDGATILEQMQVEHRVAHLLVELSKSQDDEIGDGTTGVVVLAGALLEQAEKLLAHGLHPMRIADGFEEACEIACKHLEAIGDVIHFSEEDSTPLVETAMTTLSSKIVNKYKRQMAQIAVDAVMKVANFETRDVNFDLIKMEGKPGGTLGETALINGIVIDKDFSHPQMPKEVKDAKMCILTCPFEPPKPKTKHKVDITSVEAYEKLYKQEQEYFTTMIKQVKDSGANLVICQWGFDDEANHLLLQNQLPAVRWVGGVELELIAIATGGRIVPRFSELTAEKLGHAGTVREVAFGTTKERMLVIEDCASSDAITVLVRGGNKMIVEEAKRSLHDAMCVTRNLIKNNRIVYGGGAAEIACGIAVREHADNTTGIEQYAIRGFADALEDVPMALAENSGLNPIDSLSAVRAQQIAEKNPRLGIDCNSSGTNDMKEQQVFETLIGKQQQLQLATQVVRMILKIDDVIIEGSY 535

[Close]

BLAST of EWM23973.1 vs. NCBI_GenBank
Match: gi|953489947|emb|CEG46742.1| (t-complex protein epsilon subunit [Plasmopara halstedii])

HSP 1 Score: 860.907 bits (2223), Expect = 0.000e+0
Identity = 400/535 (74.77%), Postives = 474/535 (88.60%), Query Frame = 0

Query:    1 MSLVFDEYGRPFIILREQQAQNRLKGLEAQKSNIMAARSVSQILRTSFGPKGMDKMLVNSDGDVTISNDGATILQKMDVEHQVARLLVELSQSQDEEIGDGTTGVVVLAGALLEQAEKLLDRGLHPVRMAEGFEKACQLAMAHLETIADSVSFGRENIEPLYDTAMTTLSSKIVNIHKSKMARIAVDAVLSVADLERKDVNFDMIKVEGKPGGRLEDTELVRGIVVDKEISHPQMPKTIKDAKIAILTCPFEPPKPKTKHKLDISSREAYERLYEREQEYFTTMVRQCKDSGANLIICQWGFDDEANHLLLQNQLPAVRWVGGVELELIAIATGGRIVPRFSELSPEKLGRAGLVREVAFGTTKERMLVIEDCAKSQAVTILVRGGNKMIVEEAKRSLHDAMCVVRNLIKDNRIVYGGGSAEISCSIAVAKAADTETGVDQYAIRAFADALDDVPMALAENAGLSPITELSQVKSQQIKDGNPHIGVDCMQSGVADMRTQRIFETLIGKQQQFQLATQLVRMVLKIDDVLMHGNF 535
            MS+VFDEYGRPFII+R+QQ + R+KG++A KSNI+AARSVS +LRTS GP+GMDKM+V+ DGDVTISNDGATIL++M VEH+VA LLVELS+SQD+EIGDGTTGVVVLAGALLEQAEKLL  GLHP+R+A+GFE+AC++A  +LE I D + F +E+  PL +TAMTTLSSKIVN +K +MA+IAVDAV+ VA+ E +DVNFD+IKVEGK GG L +T L+ GIV+DK+ SHPQMPK + DAK+ ILTCPFEPPKPKTKHKLDI+S EAYERLY++EQEYFTTM++Q K+SGANL+ICQWGFDDEANHLLLQNQLPAVRWVGGVELELIAIATGGRIVPRFSEL+ +KLGRAG VREVAFGTTKERMLVIEDCA S A+T+LVRGGNKMIVEEAKRSLHDAMCV RNLIK+NRIVYGGG+AEI+C IAV + AD  TG++QYAIR FADAL+D+PMALAEN+GLSPI  LS V++QQI + NP +G+DC  SG  DM+ Q +FETLIGKQQQ QLATQ+VRM+LKIDDV++ G++
Sbjct:    1 MSMVFDEYGRPFIIVRDQQQKERIKGVDAIKSNILAARSVSSLLRTSLGPRGMDKMMVSQDGDVTISNDGATILEQMQVEHRVAHLLVELSKSQDDEIGDGTTGVVVLAGALLEQAEKLLSHGLHPMRIADGFEEACEIACKYLENIGDVIQFSKEDSTPLVETAMTTLSSKIVNKYKRQMAQIAVDAVMKVANFETRDVNFDLIKVEGKSGGSLGETTLINGIVIDKDFSHPQMPKEVNDAKMCILTCPFEPPKPKTKHKLDITSVEAYERLYKQEQEYFTTMIKQVKESGANLVICQWGFDDEANHLLLQNQLPAVRWVGGVELELIAIATGGRIVPRFSELTSDKLGRAGTVREVAFGTTKERMLVIEDCASSDAITVLVRGGNKMIVEEAKRSLHDAMCVTRNLIKNNRIVYGGGAAEIACGIAVREYADKTTGIEQYAIRGFADALEDIPMALAENSGLSPIDSLSAVRAQQIAEKNPRLGIDCNSSGTNDMKEQHVFETLIGKQQQLQLATQVVRMILKIDDVILEGSY 535

[Close]

BLAST of EWM23973.1 vs. NCBI_GenBank
Match: gi|970649755|gb|KUF88946.1| (T-complex protein 1 subunit epsilon [Phytophthora nicotianae])

HSP 1 Score: 860.136 bits (2221), Expect = 0.000e+0
Identity = 400/535 (74.77%), Postives = 474/535 (88.60%), Query Frame = 0

Query:    1 MSLVFDEYGRPFIILREQQAQNRLKGLEAQKSNIMAARSVSQILRTSFGPKGMDKMLVNSDGDVTISNDGATILQKMDVEHQVARLLVELSQSQDEEIGDGTTGVVVLAGALLEQAEKLLDRGLHPVRMAEGFEKACQLAMAHLETIADSVSFGRENIEPLYDTAMTTLSSKIVNIHKSKMARIAVDAVLSVADLERKDVNFDMIKVEGKPGGRLEDTELVRGIVVDKEISHPQMPKTIKDAKIAILTCPFEPPKPKTKHKLDISSREAYERLYEREQEYFTTMVRQCKDSGANLIICQWGFDDEANHLLLQNQLPAVRWVGGVELELIAIATGGRIVPRFSELSPEKLGRAGLVREVAFGTTKERMLVIEDCAKSQAVTILVRGGNKMIVEEAKRSLHDAMCVVRNLIKDNRIVYGGGSAEISCSIAVAKAADTETGVDQYAIRAFADALDDVPMALAENAGLSPITELSQVKSQQIKDGNPHIGVDCMQSGVADMRTQRIFETLIGKQQQFQLATQLVRMVLKIDDVLMHGNF 535
            MS+VFDEYGRPFIILR+Q+ + R+KG+EA KSNI+AAR+VS +LRTS GP+GMDKM+V+ DGDVTISNDGATIL++M VEH+VA LLVELS+SQD+EIGDGTTGVVVLAGALLEQAEKLL  GLHP+R+A+GFE+AC++A  HLE I D + F  E+  PL +TAMTTLSSKIVN +K +MA+IAVDAV+ VA+ E +DVNFD+IK+EGKPGG L +T L+ GIV+DK+ SHPQMPK +KDAK+ ILTCPFEPPKPKTKHK+DI+S EAYE+LY++EQEYFTTM++Q KDSGAN +ICQWGFDDEANHLLLQNQLPAVRWVGGVELELIAIATGGRIVPRFSEL+ EKLG AG VREVAFGTTKERMLVIEDCA S A+T+LVRGGNKMIVEEAKRSLHDAMCV RNLIK+NRIVYGGG+AEI+C IAV + AD  TG++QYAIR FADAL+DVPMALAEN+GL+PI  LS V++QQI + NP +G+DC  SG  DM+ Q++FETLIGKQQQ QLATQ+VRM+LKIDDV++ G++
Sbjct:    1 MSMVFDEYGRPFIILRDQEQKERIKGVEAIKSNILAARTVSSLLRTSLGPRGMDKMMVSQDGDVTISNDGATILEQMQVEHRVAHLLVELSKSQDDEIGDGTTGVVVLAGALLEQAEKLLAHGLHPMRIADGFEEACEIACKHLEAIGDVIHFSEEDSTPLVETAMTTLSSKIVNKYKRQMAQIAVDAVMKVANFETRDVNFDLIKMEGKPGGTLGETALINGIVIDKDFSHPQMPKEVKDAKMCILTCPFEPPKPKTKHKVDITSVEAYEKLYKQEQEYFTTMIKQVKDSGANXVICQWGFDDEANHLLLQNQLPAVRWVGGVELELIAIATGGRIVPRFSELTAEKLGHAGTVREVAFGTTKERMLVIEDCASSDAITVLVRGGNKMIVEEAKRSLHDAMCVTRNLIKNNRIVYGGGAAEIACGIAVREHADNTTGIEQYAIRGFADALEDVPMALAENSGLNPIDSLSAVRAQQIAEKNPRLGIDCNSSGTNDMKEQQVFETLIGKQQQLQLATQVVRMILKIDDVIIEGSY 535

The following BLAST results are available for this feature:

BLAST of EWM23973.1 vs. NCBI_GenBank

BLAST of EWM23973.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10


Match Name	E-value	Identity	Description
gi\|585105259\|gb\|EWM23973.1\|	0.000e+0	100.00	t-complex protein 1 subunit epsilon [Nannochlorops...	[more]
gi\|298705368\|emb\|CBJ28658.1\|	0.000e+0	78.54	T-complex protein, epsilon subunit [Ectocarpus sil...	[more]
gi\|676386379\|ref\|XP_009036468.1\|	0.000e+0	78.36	hypothetical protein AURANDRAFT_26043 [Aureococcus...	[more]
gi\|676394089\|ref\|XP_009040322.1\|	0.000e+0	78.36	hypothetical protein AURANDRAFT_54967 [Aureococcus...	[more]
gi\|695468690\|ref\|XP_009539930.1\|	0.000e+0	75.70	hypothetical protein PHYSODRAFT_566801 [Phytophtho...	[more]
gi\|1214708035\|gb\|OWZ19361.1\|	0.000e+0	75.33	T-complex protein 1, epsilon subunit [Phytophthora...	[more]
gi\|301113382\|ref\|XP_002998461.1\|	0.000e+0	75.33	T-complex protein 1 subunit epsilon [Phytophthora ...	[more]
gi\|675199791\|ref\|XP_008908780.1\|	0.000e+0	74.95	T-complex protein 1, epsilon subunit [Phytophthora...	[more]
gi\|953489947\|emb\|CEG46742.1\|	0.000e+0	74.77	t-complex protein epsilon subunit [Plasmopara hals...	[more]
gi\|970649755\|gb\|KUF88946.1\|	0.000e+0	74.77	T-complex protein 1 subunit epsilon [Phytophthora ...	[more]

Relationships

This CDS is a part of the following mRNA feature(s):


Feature Name	Unique Name	Species	Type
rna6697	rna6697	Nannochloropsis gaditana (N. gaditana B-31)	mRNA

Sequences

Synonyms

Publications