|
|
Properties
| Property Name | Value |
|---|
| Product | Casein kinase II, regulatory subunit, alpha-helical |
| Orig transcript id | gnl|cribi|Naga_100040g47.2030.mrna |
| Orig protein id | gnl|cribi|Naga_100040g47.2030 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002469.1 | supercontig | CM002469.1:277384..279677 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna6695 ID=rna6695|Name=rna6695|organism=Nannochloropsis gaditana|type=mRNA|length=1912bp
CGAGTCGGTCGAAGGATGGGGCGACATCCACGAGGCATCACCACGCACAA
AGAATAGAAGGAGCATGGGTCATGAAGCGGCAAGTGAACGGGATGGACGG
CCTTGTGCCTGCCATGCCTAATACCATTTGGCTAATAGCGTCTCCGCCTT
GCGTCGACTCCCGGCGGCTTGAAGCTTCGGCGAGGCAGGCACTTGTCCCT
GCCCCGCCCGTCACAGATGTTTATGTCACCTCTACTCATGCGAGCACCAC
CACGTCCCGGACAGACCTCCGCCGTCCTCTCCTACTATGGTCTATTCGCA
CTCTTGGTCAGCATTTTTTGCGCCTCCCTCGTCGGTGAGCCATGTCGCGA
TGCGAGCAAACGGCGGCAGCTGGTTTTCGGCCCACCCTTCCTCTTCAGGG
TCCGTGCACACCACCCTGCTTGAAAAAACGAGGTCCCAGCAAAGCCAGCG
GCGTCAACAGAAATCTATCGTCGGGGAGGAACAATCCTCATCCCACCACC
GTCGCGACCTCCTTCGAAAGGCATTGGCCTTCGGTGGACTCTTGCTGGGG
AACACTGCCGTGCAGACTCTGTCGCCGTGGAGACAGCCACTTCACCTTGT
AACCCGTTTCACTGATCCGGCAAGTGCATCGGAATTGGGGGGCGGCATGC
CGCAATTCGAAGCGCAAGCCATGTCGACGGGCCGGGCTGCGGAGTTCATC
AAGCAGCATTGCCAAGGGATCCTGCGGGCGTACAACGAGACGGGCGCGAC
GCCTGTGTTCCTGTATCGAGGCGAAAACATCAACAGACCGACCTTGCTGA
AATGTCCCCCGGACTTGATGGACGTGAACACCTACCAAGAAGGAAAGGAG
GCAGCGGCCTTTTTCGCCAAGATGGAAGAGGCCATGGAGGGGCTTCCCGT
CAGGCCCAGTCTGGGACATCTAGCCACCAGCGACATGCGAAGTGCCGCGG
CCTGGGGTACTCCCTGCTCGGTCTGGCCCCTTGGCAATGAGCTTCACTAT
GCGTGGCTCCGAGATGCCAAGGCCTTCTGGCCGGTGCGCGCGGAGAAGCG
CGACATATCTGTGGACGACATCCGCGCATGCGTGAAGCGGGAGATCCAGG
TGGATCAGAATCTGGACATGGCCGTGAAGATGGGCCACGAAGTAATGCTC
AGCACGGGGGAGTTCGGCTTTCTGGTCGTTCCCGTGGCGTACGAGCGGGA
GGTCCGAGCGCGGCTTGGCCTGGGGTATGAGTGAGACGGAAACTAGGAAC
CTGTGTGGAACCCAGCTTGAAGCTACTTAACGATGGAGGCATCGGTAAAG
TGGTTCGTTGAAGCGCTACAGATATTTTTGGAATTCGATCTTGCGCAGCT
ACCTGAAGGGCTGTAGATCGGAGGCGAGCGTGAAAGTGTACATATATATG
AGCGGCGAGTCAGTAAAATCTGGTTTTCGATACATGAAGATTCAAGGGGC
AGTTTCGCTGCATCGGAGGACCTCAATGTTCGGTCTTCCGATATCATGGA
GCCACGTAGACTTTGCTTACTTCCTCTTTTTCGTTTAGACCATTCACTGC
GAAATAAGTGCAATGGACTTTAGAATCCTCGCATTGCTTCATCGCAACAC
ATATTCCTTATCCCTTCCAAAAAATGCTCGACGGGACCATTTGTTTCAGA
GTGCGAGTATCTAAAATAGTGTTTTTGAGTTTATTGCGTGCCGTGAAGGG
ATCTTTTTGGTTCATCGACAAGAGAACAAAGGACACATCCCTGCGTTCTC
TGCTTCCAGGGTGACTCGACTGGCGTATCATCGCAAATGCACAGCAAATT
CTCTATAGAATTAAAAAAGAAGCACAAAATTTCCGACGCAATCAAAAGAG
CGGATGAACGCTCCAACGAAGCCCGCGGCGCCCCCGAGGGATGACACTGG
TCGGCTGCTTCT back to topprotein sequence of rna6695 >rna6695-protein ID=rna6695-protein|Name=rna6695|organism=Nannochloropsis gaditana|type=polypeptide|length=540bp
MRRYGDSTRNVGVGKEEERGRERSKELEHQDGSSHPLALTSTNSTSTPTS
SSSNGKGNNNAHATKGPQSSGGGKNEEARLSRNDGGESCSSGSCSTAATG
EATTLSLPTVVSGSVPLPAGGRTCSGQISPGTSCVKEGRSGGGAESGRTG
CERREQGPTTRGEEWAARNVSTPIDAERAGLRAKGGGRMVSGGTGCSGER
PHGPGKDREECERLQQEELQRRVPIPPPSRSETTPPAPTGWRGSKEQKSE
MEDLSRSDEEEEEEEEEVEEEEEEEEEDEEEEEEEEEEEEEEISWVSWYV
SLKGNEFMCEVDEEYIQDDFNLTGLSSLVPYYDYALDMVLDVELPIESMT
EEQHELVEGAAEMLYGLIHARYILTSRGLHAMNEKYKSSLFGRCPRFLCG
TQPVLPIGLADHPRVSTVNVFCPRCRDVFVPRSTRHAAMDGAYFGTTFAH
LFLLTHPEAIPPAVEQSYVPRIYGFKINADSTYYTAARRRENEERERRAG
RGAGGGGGERGEGRAPLSSTAIMRRVRQMVRDGRDGRQGR back to topmRNA from alignment at CM002469.1:277384..279677+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna6695 ID=rna6695|Name=rna6695|organism=Nannochloropsis gaditana|type=mRNA|length=2294bp|location=Sequence derived from alignment at CM002469.1:277384..279677+ (Nannochloropsis gaditana)
CAAATACTGCCCATGTCCTGACCGGGGGGCTATGCCTGGGTCGCCCGCCG
TGTTGTTGTGCGAGGTGTGATGGGGGGCCGTGATGACGTTCTTCGAATCA
ACTTGTTGCATCACAATTTACCATTTCTCCACCGTGAACATTTCCCTTGA
TTTGTGATACAGGCCTTGGAAGCGTCGGAATGAGAAGGTACGGGGACAGC
ACGCGCAACGTGGGtgtagggaaggaagaggaaagaggtagAGAGAGAAG
TAAGGAGCTCGAGCATCAGGATGGGTCGAGCCATCCCCTGGCCTTAACCT
CCACCAATAGTACGAGTACACCCACAAGCAGTAGCAGCAACGGTAAGGGA
AATAACAATGCCCATGCTACGAAGGGGCCGCAGAgctcaggaggagggaa
gaacgaAGAAGCACGCCTCAGCAGAAATGACGGTGGCGAAAGCTGCAGTA
GTGGGAGCTGCAgcacagcagcaacagggGAAGCAACCACACTTTCTCTC
CCCACAGTTGTGAGTGGTAGTGTGCCATTGCCAGCAGGAGGACGGACGTG
TTCAGGTCAAATTTCTCCTGGCACTAGctgcgtgaaggaggggcgcagcg
ggggaggggctgagagtgggaggacggggtgcGAGAGACGCGAGCAAGGG
CCCACAACGCGGGGTGAGGAATGGGCGGCAAGGAACGTTTCAACACCAAT
AGATGCCGAACGGGCCGGTTTGcgcgcgaagggaggagggaggatggtat
cgggagggacgggctgTAGCGGCGAGAGGCCCCATGGGCCCGGGAAGGAC
CGCGAGGAGTGCGAGCGCCTGCAGCAAGAGGAGCTGCAGCGACGCGtacc
catcccccctccgtccaggAGTGAGACCACGCCGCCGGCACCAACAGGGT
GGCGAGGGTCAAAGGAGCAGAAGAGTGAGATGGAAGACTTGAGTAGgtcc
gacgaggaggaggaagaggaagaggaggaggtagaagaggaggaagaaga
ggaagaagaagatgaggaggaagaagaggaagaagaagaagaggaagagg
aggaaatttCATGGGTGTCGTGGTACGTCAGCCTGAAAGGAAACGAATTT
ATGTGTGAAGTAGACGAGGAGTACATCCAGGACGACTTCAACTTGACCGG
ACTGAGCAGCCTGGTGCCCTACTACGACTACGCGCTGGACATGGTGCTGG
ACGTGGAACTTCCAATTGAGTCCAtgacggaggagcagcacgagctggtg
gagggcgcggcGGAGATGCTCTACGGCCTTATCCATGCTCGCTACATACT
GACCAGCCGGGGGCTGCACGCCATGGTAAGGGTCTCGCGTCGCCTCAAGT
TTGTGTGTCCCCTTGCATGTCTCTTTGTCTATCGACGTTGGAACCGGCCG
TCCTAGCTCCCAGTACTCCGTGCTTGTTTCGTTGGGCTCaccgctccttt
ccctgtttcctctcccttccccaactTTCTTCGTCGCGAGTTCAGAACGA
AAAGTACAAATCCAGTCTCTTTGGTCGCTGTCCCCGTTTTCTATGCGGTA
CgcagcccgtcctccccatcGGCCTCGCCGACCACCCCCGCGTCAGCACC
GTCAACGTCTTCTGCCCTCGATGCCGGGACGTTTTCGTGCCCCGTTCCAC
GCGCCACGCGGCGATGGACGGCGCCTACTTCGGGACCACGTTCGcacatc
ttttccttctgaCGCATCCGGAAGCCATCCCTCCTGCTGTGGAGCAAAGC
TACGTTCCCCGCATCTATGGCTTTAAAATCAACGCCGACAGCACTTACTA
CACTGCGGCCCGGCGACGAGAGAATgaagagcgggagaggagggcagggc
gaggagctggtggaggaggaggagaaagaggagaaggccggGCCCCGTTG
TCGTCTACCGCGATAATGCGCCGAGTACGTCAGATGGTTCGAGATGGGCG
GGACGGCAGGCAGGGCAGGTAGGGGGGAAACCGGGGAAAAACTAAGGAGG
ACGGAGCGGAAATGGCCCAATTCTTGCCACCCTAGAATTATAGCAGGGAG
CTTCTGTACATGCTGAGAAAAACATTGGTAAATCTGTTGTCTCGTTGGAT
TTGGGTAGGCACATACTTCAAGGGTGTCCCCTTCTCGTACATATCTCTTC
GAAATCGAAATAAAACAATCCGGTCATCGATCGGCATTTGTTCGGAGGTG
GTCATAATGTTATTTTCACCGTGCTGTAGTCACTCTTCGTGACATTGTTG
TGAGTCCGCGCATTTTGACTTTCAAGACCAGGAAAAGagacagg back to topCoding sequence (CDS) from alignment at CM002469.1:277384..279677+ >rna6695 ID=rna6695|Name=rna6695|organism=Nannochloropsis gaditana|type=CDS|length=3246bp|location=Sequence derived from alignment at CM002469.1:277384..279677+ (Nannochloropsis gaditana)
ATGAGAAGGTACGGGGACAGCACGCGCAACGTGGGtgtagggaaggaaga
ggaaagaggtagAGAGAGAAGTAAGGAGCTCGAGCATCAGGATGGGTCGA
GCCATCCCCTGGCCTTAACCTCCACCAATAGTACGAGTACACCCACAAGC
AGTAGCAGCAACGGTAAGGGAAATAACAATGCCCATGCTACGAAGGGGCC
GCAGAgctcaggaggagggaagaacgaAGAAGCACGCCTCAGCAGAAATG
ACGGTGGCGAAAGCTGCAGTAGTGGGAGCTGCAgcacagcagcaacaggg
GAAGCAACCACACTTTCTCTCCCCACAGTTGTGAGTGGTAGTGTGCCATT
GCCAGCAGGAGGACGGACGTGTTCAGGTCAAATTTCTCCTGGCACTAGct
gcgtgaaggaggggcgcagcgggggaggggctgagagtgggaggacgggg
tgcGAGAGACGCGAGCAAGGGCCCACAACGCGGGGTGAGGAATGGGCGGC
AAGGAACGTTTCAACACCAATAGATGCCGAACGGGCCGGTTTGcgcgcga
agggaggagggaggatggtatcgggagggacgggctgTAGCGGCGAGAGG
CCCCATGGGCCCGGGAAGGACCGCGAGGAGTGCGAGCGCCTGCAGCAAGA
GGAGCTGCAGCGACGCGtacccatcccccctccgtccaggAGTGAGACCA
CGCCGCCGGCACCAACAGGGTGGCGAGGGTCAAAGGAGCAGAAGAGTGAG
ATGGAAGACTTGAGTAGgtccgacgaggaggaggaagaggaagaggagga
ggtagaagaggaggaagaagaggaagaagaagatgaggaggaagaagagg
aagaagaagaagaggaagaggaggaaatttCATGGGTGTCGTGGTACGTC
AGCCTGAAAGGAAACGAATTTATGTGTGAAGTAGACGAGGAGTACATCCA
GGACGACTTCAACTTGACCGGACTGAGCAGCCTGGTGCCCTACTACGACT
ACGCGCTGGACATGGTGCTGGACGTGGAACTTCCAATTGAGTCCAtgacg
gaggagcagcacgagctggtggagggcgcggcGGAGATGCTCTACGGCCT
TATCCATGCTCGCTACATACTGACCAGCCGGGGGCTGCACGCCATGAACG
AAAAGTACAAATCCAGTCTCTTTGGTCGCTGTCCCCGTTTTCTATGCGGT
ACgcagcccgtcctccccatcGGCCTCGCCGACCACCCCCGCGTCAGCAC
CGTCAACGTCTTCTGCCCTCGATGCCGGGACGTTTTCGTGCCCCGTTCCA
CGCGCCACGCGGCGATGGACGGCGCCTACTTCGGGACCACGTTCGcacat
cttttccttctgaCGCATCCGGAAGCCATCCCTCCTGCTGTGGAGCAAAG
CTACGTTCCCCGCATCTATGGCTTTAAAATCAACGCCGACAGCACTTACT
ACACTGCGGCCCGGCGACGAGAGAATgaagagcgggagaggagggcaggg
cgaggagctggtggaggaggaggagaaagaggagaaggccggGCCCCGTT
GTCGTCTACCGCGATAATGCGCCGAGTACGTCAGATGGTTCGAGATGGGC
GGGACGGCAGGCAGGGCAGGTAGATGAGAAGGTACGGGGACAGCACGCGC
AACGTGGGtgtagggaaggaagaggaaagaggtagAGAGAGAAGTAAGGA
GCTCGAGCATCAGGATGGGTCGAGCCATCCCCTGGCCTTAACCTCCACCA
ATAGTACGAGTACACCCACAAGCAGTAGCAGCAACGGTAAGGGAAATAAC
AATGCCCATGCTACGAAGGGGCCGCAGAgctcaggaggagggaagaacga
AGAAGCACGCCTCAGCAGAAATGACGGTGGCGAAAGCTGCAGTAGTGGGA
GCTGCAgcacagcagcaacagggGAAGCAACCACACTTTCTCTCCCCACA
GTTGTGAGTGGTAGTGTGCCATTGCCAGCAGGAGGACGGACGTGTTCAGG
TCAAATTTCTCCTGGCACTAGctgcgtgaaggaggggcgcagcgggggag
gggctgagagtgggaggacggggtgcGAGAGACGCGAGCAAGGGCCCACA
ACGCGGGGTGAGGAATGGGCGGCAAGGAACGTTTCAACACCAATAGATGC
CGAACGGGCCGGTTTGcgcgcgaagggaggagggaggatggtatcgggag
ggacgggctgTAGCGGCGAGAGGCCCCATGGGCCCGGGAAGGACCGCGAG
GAGTGCGAGCGCCTGCAGCAAGAGGAGCTGCAGCGACGCGtacccatccc
ccctccgtccaggAGTGAGACCACGCCGCCGGCACCAACAGGGTGGCGAG
GGTCAAAGGAGCAGAAGAGTGAGATGGAAGACTTGAGTAGgtccgacgag
gaggaggaagaggaagaggaggaggtagaagaggaggaagaagaggaaga
agaagatgaggaggaagaagaggaagaagaagaagaggaagaggaggaaa
tttCATGGGTGTCGTGGTACGTCAGCCTGAAAGGAAACGAATTTATGTGT
GAAGTAGACGAGGAGTACATCCAGGACGACTTCAACTTGACCGGACTGAG
CAGCCTGGTGCCCTACTACGACTACGCGCTGGACATGGTGCTGGACGTGG
AACTTCCAATTGAGTCCAtgacggaggagcagcacgagctggtggagggc
gcggcGGAGATGCTCTACGGCCTTATCCATGCTCGCTACATACTGACCAG
CCGGGGGCTGCACGCCATGAACGAAAAGTACAAATCCAGTCTCTTTGGTC
GCTGTCCCCGTTTTCTATGCGGTACgcagcccgtcctccccatcGGCCTC
GCCGACCACCCCCGCGTCAGCACCGTCAACGTCTTCTGCCCTCGATGCCG
GGACGTTTTCGTGCCCCGTTCCACGCGCCACGCGGCGATGGACGGCGCCT
ACTTCGGGACCACGTTCGcacatcttttccttctgaCGCATCCGGAAGCC
ATCCCTCCTGCTGTGGAGCAAAGCTACGTTCCCCGCATCTATGGCTTTAA
AATCAACGCCGACAGCACTTACTACACTGCGGCCCGGCGACGAGAGAATg
aagagcgggagaggagggcagggcgaggagctggtggaggaggaggagaa
agaggagaaggccggGCCCCGTTGTCGTCTACCGCGATAATGCGCCGAGT
ACGTCAGATGGTTCGAGATGGGCGGGACGGCAGGCAGGGCAGGTAG back to top
|