EWM24032.1, cds6679 (CDS) Nannochloropsis gaditana

Overview
NameEWM24032.1
Unique Namecds6679
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002469.1:277563..278708 +
Alignment locationCM002469.1:278879..279355 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM24032.1
ProductCasein kinase II, regulatory subunit, alpha-helical
Orig transcript idgnl|cribi|Naga_100040g47.2030.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002469.1supercontigCM002469.1:277563..278708 +
CM002469.1supercontigCM002469.1:278879..279355 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016301kinase activity
GO:0030234enzyme regulator activity
GO:0019887protein kinase regulator activity
Vocabulary: Biological Process
TermDefinition
GO:0006464cellular protein modification process
Vocabulary: Cellular Component
TermDefinition
GO:0005737cytoplasm
GO:0005634nucleus
GO:0005956protein kinase CK2 complex
Vocabulary: INTERPRO
TermDefinition
IPR016150Casein_kin_II_reg-sub_b-sht
IPR016149Casein_kin_II_reg-sub_a-hlx
IPR000704Casein_kinase_II_reg-sub
Homology
BLAST of EWM24032.1 vs. NCBI_GenBank
Match: gi|585105319|gb|EWM24032.1| (Casein kinase II, regulatory subunit, alpha-helical [Nannochloropsis gaditana])

HSP 1 Score: 1089.72 bits (2817), Expect = 0.000e+0
Identity = 540/540 (100.00%), Postives = 540/540 (100.00%), Query Frame = 0
Query:    1 MRRYGDSTRNVGVGKEEERGRERSKELEHQDGSSHPLALTSTNSTSTPTSSSSNGKGNNNAHATKGPQSSGGGKNEEARLSRNDGGESCSSGSCSTAATGEATTLSLPTVVSGSVPLPAGGRTCSGQISPGTSCVKEGRSGGGAESGRTGCERREQGPTTRGEEWAARNVSTPIDAERAGLRAKGGGRMVSGGTGCSGERPHGPGKDREECERLQQEELQRRVPIPPPSRSETTPPAPTGWRGSKEQKSEMEDLSRSDEEEEEEEEEVEEEEEEEEEDEEEEEEEEEEEEEEISWVSWYVSLKGNEFMCEVDEEYIQDDFNLTGLSSLVPYYDYALDMVLDVELPIESMTEEQHELVEGAAEMLYGLIHARYILTSRGLHAMNEKYKSSLFGRCPRFLCGTQPVLPIGLADHPRVSTVNVFCPRCRDVFVPRSTRHAAMDGAYFGTTFAHLFLLTHPEAIPPAVEQSYVPRIYGFKINADSTYYTAARRRENEERERRAGRGAGGGGGERGEGRAPLSSTAIMRRVRQMVRDGRDGRQGR 540
            MRRYGDSTRNVGVGKEEERGRERSKELEHQDGSSHPLALTSTNSTSTPTSSSSNGKGNNNAHATKGPQSSGGGKNEEARLSRNDGGESCSSGSCSTAATGEATTLSLPTVVSGSVPLPAGGRTCSGQISPGTSCVKEGRSGGGAESGRTGCERREQGPTTRGEEWAARNVSTPIDAERAGLRAKGGGRMVSGGTGCSGERPHGPGKDREECERLQQEELQRRVPIPPPSRSETTPPAPTGWRGSKEQKSEMEDLSRSDEEEEEEEEEVEEEEEEEEEDEEEEEEEEEEEEEEISWVSWYVSLKGNEFMCEVDEEYIQDDFNLTGLSSLVPYYDYALDMVLDVELPIESMTEEQHELVEGAAEMLYGLIHARYILTSRGLHAMNEKYKSSLFGRCPRFLCGTQPVLPIGLADHPRVSTVNVFCPRCRDVFVPRSTRHAAMDGAYFGTTFAHLFLLTHPEAIPPAVEQSYVPRIYGFKINADSTYYTAARRRENEERERRAGRGAGGGGGERGEGRAPLSSTAIMRRVRQMVRDGRDGRQGR
Sbjct:    1 MRRYGDSTRNVGVGKEEERGRERSKELEHQDGSSHPLALTSTNSTSTPTSSSSNGKGNNNAHATKGPQSSGGGKNEEARLSRNDGGESCSSGSCSTAATGEATTLSLPTVVSGSVPLPAGGRTCSGQISPGTSCVKEGRSGGGAESGRTGCERREQGPTTRGEEWAARNVSTPIDAERAGLRAKGGGRMVSGGTGCSGERPHGPGKDREECERLQQEELQRRVPIPPPSRSETTPPAPTGWRGSKEQKSEMEDLSRSDEEEEEEEEEVEEEEEEEEEDEEEEEEEEEEEEEEISWVSWYVSLKGNEFMCEVDEEYIQDDFNLTGLSSLVPYYDYALDMVLDVELPIESMTEEQHELVEGAAEMLYGLIHARYILTSRGLHAMNEKYKSSLFGRCPRFLCGTQPVLPIGLADHPRVSTVNVFCPRCRDVFVPRSTRHAAMDGAYFGTTFAHLFLLTHPEAIPPAVEQSYVPRIYGFKINADSTYYTAARRRENEERERRAGRGAGGGGGERGEGRAPLSSTAIMRRVRQMVRDGRDGRQGR 540          
BLAST of EWM24032.1 vs. NCBI_GenBank
Match: gi|1072224880|gb|OEU09629.1| (casein kinase 2 beta chain, CK2B [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 311.997 bits (798), Expect = 1.652e-100
Identity = 136/197 (69.04%), Postives = 168/197 (85.28%), Query Frame = 0
Query:  290 EEEISWVSWYVSLKGNEFMCEVDEEYIQDDFNLTGLSSLVPYYDYALDMVLDVELPIE-SMTEEQHELVEGAAEMLYGLIHARYILTSRGLHAMNEKYKSSLFGRCPRFLCGTQPVLPIGLADHPRVSTVNVFCPRCRDVFVPRSTRHAAMDGAYFGTTFAHLFLLTHPEAIPPAVEQSYVPRIYGFKINADSTYYT 485
            +E+ SW++W+ SL+GNEF CEVDE+YIQDDFNLTGLSSLVPYY+YALDMVLDVE+P+E S+TEEQ E+VE AAEMLYGLIHARYI+T+RG+HAM EKY+++ FGRCPR  C  QPVLP+GL+D PR  TVNVFCPRC  +F P+STR A +DGAYFGTTF HL+L+THP+ IP   +Q+YVPR+YGFK++  S +Y 
Sbjct:    5 DEDGSWITWFCSLRGNEFFCEVDEDYIQDDFNLTGLSSLVPYYEYALDMVLDVEMPMEDSLTEEQQEIVESAAEMLYGLIHARYIVTNRGMHAMYEKYRAAAFGRCPRVFCQGQPVLPVGLSDLPRNYTVNVFCPRCHGLFFPKSTRQANIDGAYFGTTFPHLYLMTHPDMIPTKPQQTYVPRVYGFKVHKTSLFYI 201          
BLAST of EWM24032.1 vs. NCBI_GenBank
Match: gi|676393095|ref|XP_009039825.1| (hypothetical protein AURANDRAFT_54649 [Aureococcus anophagefferens] >gi|323449556|gb|EGB05443.1| hypothetical protein AURANDRAFT_54649 [Aureococcus anophagefferens])

HSP 1 Score: 308.531 bits (789), Expect = 1.894e-98
Identity = 138/199 (69.35%), Postives = 166/199 (83.42%), Query Frame = 0
Query:  290 EEEISWVSWYVSLKGNEFMCEVDEEYIQDDFNLTGLSSLVPYYDYALDMVLDVELPIE-SMTEEQHELVEGAAEMLYGLIHARYILTSRGLHAMNEKYKSSLFGRCPRFLCGTQPVLPIGLADHPRVSTVNVFCPRCRDVFVPRSTRHAAMDGAYFGTTFAHLFLLTHPEAIPPAVEQSYVPRIYGFKINADSTYYTAA 487
            +EE SW++W++SL+GNEF CEVDEEYIQDDFNLTGLSSLVPYYDYALDM+LDVE+ IE S+TEEQ ELVE AAEMLYGLIHARY++T+RG+ AM EKY S+ FGRCPR  C  QP LP+G +D PR  TV+VFCP CRD+F PRS+R A++DGAYFGTTF HLFL+T PE IP    QS+VPR++GF+I+  S Y+T A
Sbjct:   44 DEESSWIAWFLSLRGNEFFCEVDEEYIQDDFNLTGLSSLVPYYDYALDMILDVEMAIEESLTEEQQELVESAAEMLYGLIHARYVITNRGMQAMYEKYASASFGRCPRAFCCGQPALPVGRSDLPRNYTVHVFCPMCRDIFTPRSSRSASIDGAYFGTTFPHLFLMTFPELIPQHGVQSFVPRVFGFRIHKASPYHTTA 242          
BLAST of EWM24032.1 vs. NCBI_GenBank
Match: gi|224011944|ref|XP_002294625.1| (predicted protein, partial [Thalassiosira pseudonana CCMP1335] >gi|220969645|gb|EED87985.1| predicted protein, partial [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 300.827 bits (769), Expect = 1.672e-96
Identity = 135/190 (71.05%), Postives = 160/190 (84.21%), Query Frame = 0
Query:  290 EEEISWVSWYVSLKGNEFMCEVDEEYIQDDFNLTGLSSLVPYYDYALDMVLDVELPIE-SMTEEQHELVEGAAEMLYGLIHARYILTSRGLHAMNEKYKSSLFGRCPRFLCGTQPVLPIGLADHPRVSTVNVFCPRCRDVFVPRSTRHAAMDGAYFGTTFAHLFLLTHPEAIPPAVEQSYVPRIYGFKIN 478
            +E+ SW++W+  L+GNEF CEVDE+YIQDDFNLTGL+ LVPYYDYALDMVLDVE+P+E S+TEEQ E+VE AAEMLYGLIHARYI+T+RG+HAM EKY+S+ FGRCP   C  QPVLP+GL+D PR  TVNVFCPRC  +F P+STR A +DGAYFGTTF HL+L+THPE IP    Q YVPR+YGFKIN
Sbjct:   17 DEDGSWIAWFCGLRGNEFFCEVDEDYIQDDFNLTGLNGLVPYYDYALDMVLDVEMPMEDSLTEEQQEIVESAAEMLYGLIHARYIVTNRGMHAMYEKYRSASFGRCPHVFCQGQPVLPVGLSDLPRNYTVNVFCPRCHGLFFPKSTRQANIDGAYFGTTFPHLYLMTHPEMIPVRPSQQYVPRVYGFKIN 206          
BLAST of EWM24032.1 vs. NCBI_GenBank
Match: gi|1173945749|gb|OQR94342.1| (casein kinase II subunit beta [Achlya hypogyna])

HSP 1 Score: 302.753 bits (774), Expect = 6.735e-96
Identity = 135/210 (64.29%), Postives = 166/210 (79.05%), Query Frame = 0
Query:  293 ISWVSWYVSLKGNEFMCEVDEEYIQDDFNLTGLSSLVPYYDYALDMVLDVELPIE-SMTEEQHELVEGAAEMLYGLIHARYILTSRGLHAMNEKYKSSLFGRCPRFLCGTQPVLPIGLADHPRVSTVNVFCPRCRDVFVPRSTRHAAMDGAYFGTTFAHLFLLTHPEAIPPAVEQSYVPRIYGFKINADSTYYTAARRRENEERERRAGR 501
            +SW+SW+ SL+GNEF CE+DEEYI DDFN+TGLSS+VPYYDYA+DM+LDVE P+E S+T+ Q E+VE AAEMLYGLIHARYI+T+RG+ AM EKY++  FGRC R  C  QPVLP+G +D PR +TVN+FCPRCRDVF P+S R   +DG+YFGTTF HLFLLTHP  +P    Q YVPRI+G+KINA S YY   R ++N+    R GR
Sbjct:   81 LSWISWFCSLRGNEFFCEIDEEYIIDDFNMTGLSSIVPYYDYAMDMILDVETPLEESLTDIQQEMVESAAEMLYGLIHARYIVTTRGMAAMLEKYQNVDFGRCHRVHCQGQPVLPVGQSDVPRHTTVNIFCPRCRDVFFPKSQRQGNIDGSYFGTTFPHLFLLTHPSLVPSPPAQVYVPRIFGYKINAASEYYLGKREKDNDRNGHRRGR 290          
BLAST of EWM24032.1 vs. NCBI_GenBank
Match: gi|669141820|ref|XP_008606472.1| (casein kinase II subunit beta [Saprolegnia diclina VS20] >gi|530741756|gb|EQC39998.1| casein kinase II subunit beta [Saprolegnia diclina VS20])

HSP 1 Score: 297.36 bits (760), Expect = 6.865e-94
Identity = 133/210 (63.33%), Postives = 164/210 (78.10%), Query Frame = 0
Query:  293 ISWVSWYVSLKGNEFMCEVDEEYIQDDFNLTGLSSLVPYYDYALDMVLDVELPIE-SMTEEQHELVEGAAEMLYGLIHARYILTSRGLHAMNEKYKSSLFGRCPRFLCGTQPVLPIGLADHPRVSTVNVFCPRCRDVFVPRSTRHAAMDGAYFGTTFAHLFLLTHPEAIPPAVEQSYVPRIYGFKINADSTYYTAARRRENEERERRAGR 501
            +SW+SW+ SL+GNEF CEVDE+YI DDFN+TGLSS+VPYYDYA+DM+LDVE P E S+T+ Q E+VE AAEMLYGLIHARYI+T+RG+ AM EKY++  FGRC R  C  QPVLP+G +D PR +TVN+FCPRCRD+F P+S R    DG+YFGTTF HLFLLTHP  +P    Q+YVPRI+G+KI+  S YY   R +EN+    R GR
Sbjct:   75 LSWISWFCSLRGNEFFCEVDEDYIIDDFNMTGLSSIVPYYDYAMDMILDVETPHEDSLTDIQQEMVESAAEMLYGLIHARYIVTTRGMAAMLEKYQNVDFGRCHRVHCQGQPVLPVGQSDVPRHTTVNIFCPRCRDIFFPKSQRQGNQDGSYFGTTFPHLFLLTHPSIVPSPPSQAYVPRIFGYKIHHTSEYYLGKREKENDRNGHRRGR 284          
BLAST of EWM24032.1 vs. NCBI_GenBank
Match: gi|299472384|emb|CBN77572.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 297.36 bits (760), Expect = 2.836e-93
Identity = 138/243 (56.79%), Postives = 176/243 (72.43%), Query Frame = 0
Query:  243 GSKEQKSEMEDLSRSDEEEEEEEEEVEEEEEEEEEDEEEEEEEEEEEEEEISWVSWYVSLKGNEFMCEVDEEYIQDDFNLTGLSSLVPYYDYALDMVLDVELPI-ESMTEEQHELVEGAAEMLYGLIHARYILTSRGLHAMNEKYKSSLFGRCPRFLCGTQPVLPIGLADHPRVSTVNVFCPRCRDVFVPRSTRHAAMDGAYFGTTFAHLFLLTHPEAIPPAVEQSYVPRIYGFKINADSTYY 484
            G+K  K E E+   SDE +     ++E+  E    DE+             +W+SW+V+L+GNEF CEVDE+YIQDDFNLTGLS++VPYY+YALDM+LDVE+P  +++TEEQ E+VE AAE+LYGLIHARYILTSRG+  M +K++   FGRCPR  C  Q VLP GL+D PR  TV V+CP+C+D+F P+STR A +DGAYFGTTF+HLFLL HPE IP    Q+Y  RIYGFKI+  S Y+
Sbjct:   77 GAKTGKGEEEEGGESDEPDLTASADLEDSSELSASDEDS------------TWISWFVTLRGNEFFCEVDEDYIQDDFNLTGLSTMVPYYEYALDMILDVEMPAGQTLTEEQQEVVESAAEILYGLIHARYILTSRGMQGMFDKFQVGAFGRCPRVYCQGQNVLPAGLSDVPRNCTVAVYCPKCQDIFHPKSTRQANIDGAYFGTTFSHLFLLAHPELIPSRPSQAYCSRIYGFKIHQTSAYH 307          
BLAST of EWM24032.1 vs. NCBI_GenBank
Match: gi|971516984|dbj|GAQ81209.1| (casein kinase II subunit beta [Klebsormidium nitens])

HSP 1 Score: 294.278 bits (752), Expect = 1.092e-92
Identity = 129/210 (61.43%), Postives = 163/210 (77.62%), Query Frame = 0
Query:  271 EEEEEEEDEEEEEEEEEEEEEEISWVSWYVSLKGNEFMCEVDEEYIQDDFNLTGLSSLVPYYDYALDMVLDVELPIESM-TEEQHELVEGAAEMLYGLIHARYILTSRGLHAMNEKYKSSLFGRCPRFLCGTQPVLPIGLADHPRVSTVNVFCPRCRDVFVPRSTRHAAMDGAYFGTTFAHLFLLTHPEAIPPAVEQSYVPRIYGFKINA 479
            ++ E+ + + EE +    +EE+ SW++W+ SLKGNEF CEVD+EYIQDDFNL+GLSS VPYYDYALD++LDVE P + M TEEQHE+VE AAEMLYGLIH RYILT+RG+ AM EKYK+  FGRCPR  C  QP LP+G +D PR STV ++CP+C D++ PRS     +DGAYFGTTF HLFL+T+    PP   QSYVPRI+GFK+++
Sbjct:   75 DDGEDSDTDSEESDVSGSDEEDTSWIAWFCSLKGNEFFCEVDDEYIQDDFNLSGLSSQVPYYDYALDLILDVESPNDDMLTEEQHEMVESAAEMLYGLIHVRYILTTRGMSAMLEKYKNVDFGRCPRVYCSGQPCLPMGQSDIPRTSTVKIYCPKCEDIYYPRSKYQGNIDGAYFGTTFPHLFLMTYSYIKPPKPTQSYVPRIFGFKLHS 284          
BLAST of EWM24032.1 vs. NCBI_GenBank
Match: gi|813170593|ref|XP_012204052.1| (hypothetical protein SPRG_09464 [Saprolegnia parasitica CBS 223.65] >gi|641531112|gb|KDO25201.1| hypothetical protein SPRG_09464 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 293.893 bits (751), Expect = 1.549e-92
Identity = 131/210 (62.38%), Postives = 163/210 (77.62%), Query Frame = 0
Query:  293 ISWVSWYVSLKGNEFMCEVDEEYIQDDFNLTGLSSLVPYYDYALDMVLDVELPIE-SMTEEQHELVEGAAEMLYGLIHARYILTSRGLHAMNEKYKSSLFGRCPRFLCGTQPVLPIGLADHPRVSTVNVFCPRCRDVFVPRSTRHAAMDGAYFGTTFAHLFLLTHPEAIPPAVEQSYVPRIYGFKINADSTYYTAARRRENEERERRAGR 501
            +SW+SW+ SL+GNEF CEVDE+YI DDFN+TGLSS+VPYYDYA+DM+LDVE P E S+T+ Q E+VE AAEMLYGLIHAR+I+T+RG+ AM EKY++  FGRC R  C  QPVLP+G +D PR +TVN+FCPRCRD+F P+S R    DG+YFGTTF HLFLL HP  +P    Q+YVPRI+G+KI+  S YY   R +EN+    R GR
Sbjct:   75 LSWISWFCSLRGNEFFCEVDEDYIIDDFNMTGLSSIVPYYDYAMDMILDVETPHEDSLTDIQQEMVESAAEMLYGLIHARFIVTTRGMAAMLEKYQNVEFGRCHRVHCQGQPVLPVGQSDVPRHTTVNIFCPRCRDIFFPKSQRQGNQDGSYFGTTFPHLFLLAHPSIVPSPPSQAYVPRIFGYKIHHTSEYYLGKREKENDRNGHRRGR 284          
BLAST of EWM24032.1 vs. NCBI_GenBank
Match: gi|567997841|gb|ETL47920.1| (hypothetical protein L916_02398, partial [Phytophthora parasitica])

HSP 1 Score: 290.812 bits (743), Expect = 3.865e-91
Identity = 126/214 (58.88%), Postives = 169/214 (78.97%), Query Frame = 0
Query:  289 EEEEISWVSWYVSLKGNEFMCEVDEEYIQDDFNLTGLSSLVPYYDYALDMVLDVELPIES-MTEEQHELVEGAAEMLYGLIHARYILTSRGLHAMNEKYKSSLFGRCPRFLCGTQPVLPIGLADHPRVSTVNVFCPRCRDVFVPRSTRHAAMDGAYFGTTFAHLFLLTHPEAIPPAVEQSYVPRIYGFKINADSTYYTAARRRENEERERRAGR 501
            +EEE SW++W+ SL+ N F+CEVDE+YI+DDFNLTGLSS+VPYYDYALD++LD+E P +S +T+ Q E++E AAEMLYGLIHARYILT++G+ AM +KY++  FGRC R  C  QPVLP+G +D PR +TVNVFCP+CRD+F P+S R   +DGAYFG TF H+FL+THP  + P   Q+YVPR++G+KI++ S YYT  +++ +  RER   R
Sbjct:   70 DEEETSWIAWFCSLRENSFLCEVDEDYIEDDFNLTGLSSIVPYYDYALDIILDIETPNDSTLTQIQQEMIESAAEMLYGLIHARYILTTKGMAAMLDKYQNVDFGRCHRVYCQGQPVLPVGQSDVPRHTTVNVFCPKCRDIFFPKSQRAGQIDGAYFGATFPHVFLMTHPHLVVPPPTQTYVPRVFGYKIHSSSEYYT-GKKKSSSGREREKNR 282          
The following BLAST results are available for this feature:
BLAST of EWM24032.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585105319|gb|EWM24032.1|0.000e+0100.00Casein kinase II, regulatory subunit, alpha-helica... [more]
gi|1072224880|gb|OEU09629.1|1.652e-10069.04casein kinase 2 beta chain, CK2B [Fragilariopsis c... [more]
gi|676393095|ref|XP_009039825.1|1.894e-9869.35hypothetical protein AURANDRAFT_54649 [Aureococcus... [more]
gi|224011944|ref|XP_002294625.1|1.672e-9671.05predicted protein, partial [Thalassiosira pseudona... [more]
gi|1173945749|gb|OQR94342.1|6.735e-9664.29casein kinase II subunit beta [Achlya hypogyna][more]
gi|669141820|ref|XP_008606472.1|6.865e-9463.33casein kinase II subunit beta [Saprolegnia diclina... [more]
gi|299472384|emb|CBN77572.1|2.836e-9356.79conserved unknown protein [Ectocarpus siliculosus][more]
gi|971516984|dbj|GAQ81209.1|1.092e-9261.43casein kinase II subunit beta [Klebsormidium niten... [more]
gi|813170593|ref|XP_012204052.1|1.549e-9262.38hypothetical protein SPRG_09464 [Saprolegnia paras... [more]
gi|567997841|gb|ETL47920.1|3.865e-9158.88hypothetical protein L916_02398, partial [Phytopht... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6695rna6695Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications