rna6686, rna6686 (mRNA) Nannochloropsis gaditana

Overview
Namerna6686
Unique Namerna6686
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1191
Alignment locationCM002469.1:255335..256476 +

Link to JBrowse

Properties
Property NameValue
Productrieske (2fe-2s) region protein
Orig transcript idgnl|cribi|Naga_100040g37.2007.mrna
Orig protein idgnl|cribi|Naga_100040g37.2007
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002469.1supercontigCM002469.1:255335..256476 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100040g37gene6464Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna6686rna6686-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM24009.1cds6670Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna6686 ID=rna6686|Name=rna6686|organism=Nannochloropsis gaditana|type=mRNA|length=1191bp
CCACAGGTGTATTTTTATCCCGCGAGAGGATTATACCTCACATCACTATG
GCTGCTGATGACACGCCATCGACCAGCACCAACAACGGCACTCTCAATGC
AGAAAATAGATCGGACGAACCCATATGTCTCACCCGAGCGGAGCAGCAGG
AGGCAGAAGACGACGCTAAAGGCTTCCCCAAAAATCGTTTCAAGCACGGA
ATCAACAAGCTATGGCACATTCCACCTGCTCTCAAGACCGGCCAGCCAGT
TAAATTGGGTATTGACGAAGCAGGTAGAGGTCCTGTTTTAGGGCCAATGG
TCTACGCTGCTGCATTTTGGAAAGTAGAGGAGGACGACGCCATGATCGCC
ATGGGATTCGATGACTCAAAGGCTTTGGACGAAAAAACTCGTGATGGGCT
TTTCCAGCGTATGCTGCGCACGCATGAGCAAGTGGGTTGGGTCATACACT
CTATTCCAGCCACCGAGGTGGCGGGCAAGATGCTAATGAGAGAGCCAACG
TCCCTGAACAAGATCAGCCATGACTCGGCGGCGGACATGCTCTCCTTGGT
TCTCGCAGAAGGGGTGTGTGTCACCGAGGTGTTCGTGGACACAGTGGGCG
ACCCTGATACCTATCAGAGGAAACTGGAAGGCTTGTTTGGGCACCACACC
CCCGCGATCGCCTTCACAGTGGCGAAGAAAGCGGACAGCCTCTACAAGAC
GGTGAGCGCCGCCTCCATCGCGGCTAAAGTGACGCGGGACAGGGCCATCA
GGGACTGGGTCTGGGAGGAAGACTTCCCGCAGGCCTTGTCGACAGACTTT
GGCTCCGGGTATCCTGGAGACGCGCGCTGTGCGGAGTGGCTAAGGAAGAA
TAGCAACCCTGTCTTCGGGTTCCCATCCTTGGTACGCTTCAGCTGGTCGA
CAACCCGGGAGTTGATGGAGAAGGAGTGCGTGGGGGTGGAGTGGGAGGAG
GAGGAAGAAAACGGGGGCTTGCCCGCGGGGACAGCGTCGATCGAGGCCTT
CGTCAAACCCAAGGCGGACGGCCCCAAAAAGGCGCGAAAGAGGGCCAAAT
ACTTTCAGCAGAGGGGCATGGAGACAGTGGGGGACTTTTGATTTGAGAGG
GGGCAGAGCAGCAAGGGGGGAAGAGGTATGAATCACAGTGACGTGTGGTT
TTGAACCAGTGACCTGTGGTATCGAAACGGTGCCTTCAGAT
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protein sequence of rna6686

>rna6686-protein ID=rna6686-protein|Name=rna6686|organism=Nannochloropsis gaditana|type=polypeptide|length=196bp
MKVAAILLALCATTQAFVPFAAKPAPRAAPVAAGKQNPDGSIRVKGVKAK
DEWVPLLKATDIAPGDIIPVESKGLQLLLVADYDGSVYCVANICPHLGTP
LDQGSLGDGTIVCPLHKSAFSLETGELVGDWCPFPPVLGPLVLGKLQPPR
DLAVFQVRSRGSDIEALVNVNLKADFESKYWAGLLDAQGKATGDYY
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mRNA from alignment at CM002469.1:255335..256476+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna6686 ID=rna6686|Name=rna6686|organism=Nannochloropsis gaditana|type=mRNA|length=1142bp|location=Sequence derived from alignment at CM002469.1:255335..256476+ (Nannochloropsis gaditana)
ATGAAGGTAGCTGCcattctccttgccctctgcGCCACAACTCAGGCTTT
CGGTACGTCCAGGGAGGGTTGCAGTGCAGAGAAGcgcgaaaggagaggga
ataGGGAAGGACAGATCACCGGAAAAATTGTGAGATAGGCATCACATGAT
TGATAAGTCCTTCTACGTTTACGATTTATGTATTTGTATCGGACGAAAGT
CCTCGCAAGGGGTGGTTTAGACTGTGGTGGGCGGTATGGAACGAAtcaat
ggagggaagaagggaagcgTTACCGACGGGCATTTCAACAAAACTCTTGC
GTTAACACGTGCGAGCTTACGTCGTGTTTTTTAAGATACAGAGATGCGCT
CAGCGTAGTTTGAATTGATTGGTTTGTGTATGTCATGACACTGATCGATG
GCCTGAAGTTTGAAAAATCCGAGCGACCAGCGTGGTCAAGGGCAGTGCAT
AGTGGCTGTCCGGCTGCGAGGCTTCAGAGCCCGAGCACTGTCCAATATGT
CCAAGTGGACAAAACGCAACGTGTCGCTTACAAGCGCTACCCATTCGGAG
ATGCTTTTCTCCAGCACTGACCATGTGCCCTTCAtgcttcccaccctcca
tAGTGCCTTTCGCCGCCAAGCCCGCTCCCCGGGCGGCCCCCGTGGCTGCT
GGTAAGCAAAATCCAGATGGCTCCATCCGCGTCAAGGGTGTGAAGGCGAA
GGACGAGTGGGTGCCCCTGCTCAAGGCCACAGACATTGCTCCGGGGGACA
TCATCCCCGTCGAGTCCAAGGgtctgcagctcctcctggTGGCCGACTAC
GACGGGAGTGTATACTGCGTGGCCAATATCTGCCCCCACCTGGGCACCCC
CCTGGACCAAGGCTCCCTGGGAGACGGGACCATCGTCTGCCCCCTGCACA
AGTCCGCCTTCAGCCTCGAGACCGGTGAGCTCGTCGGCGACTGgtgccct
tttccccccgtcctcggtCCCCTGGTGCTGGGCAAACTCCAGCCCCCCCG
TGACCTGGCTGTCTTCCAGGTCCGCTCCCGGGGATCAGATATCGAGGCTC
TGGTGAACGTGAACCTGAAGGCAGACTTTGAGAGCAAGTACTGGGCGGGT
CTTCTGGACGCGCAGGGCAAGGCCACGGGGGACTACTACTAA
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Coding sequence (CDS) from alignment at CM002469.1:255335..256476+

>rna6686 ID=rna6686|Name=rna6686|organism=Nannochloropsis gaditana|type=CDS|length=1182bp|location=Sequence derived from alignment at CM002469.1:255335..256476+ (Nannochloropsis gaditana)
ATGAAGGTAGCTGCcattctccttgccctctgcGCCACAACTCAGGCTTT
CGTGCCTTTCGCCGCCAAGCCCGCTCCCCGGGCGGCCCCCGTGGCTGCTG
GTAAGCAAAATCCAGATGGCTCCATCCGCGTCAAGGGTGTGAAGGCGAAG
GACGAGTGGGTGCCCCTGCTCAAGGCCACAGACATTGCTCCGGGGGACAT
CATCCCCGTCGAGTCCAAGGgtctgcagctcctcctggTGGCCGACTACG
ACGGGAGTGTATACTGCGTGGCCAATATCTGCCCCCACCTGGGCACCCCC
CTGGACCAAGGCTCCCTGGGAGACGGGACCATCGTCTGCCCCCTGCACAA
GTCCGCCTTCAGCCTCGAGACCGGTGAGCTCGTCGGCGACTGgtgccctt
ttccccccgtcctcggtCCCCTGGTGCTGGGCAAACTCCAGCCCCCCCGT
GACCTGGCTGTCTTCCAGGTCCGCTCCCGGGGATCAGATATCGAGGCTCT
GGTGAACGTGAACCTGAAGGCAGACTTTGAGAGCAAGTACTGGGCGGGTC
TTCTGGACGCGCAGGGCAAGGCCACGGGGGACTACTACTAAATGAAGGTA
GCTGCcattctccttgccctctgcGCCACAACTCAGGCTTTCGTGCCTTT
CGCCGCCAAGCCCGCTCCCCGGGCGGCCCCCGTGGCTGCTGGTAAGCAAA
ATCCAGATGGCTCCATCCGCGTCAAGGGTGTGAAGGCGAAGGACGAGTGG
GTGCCCCTGCTCAAGGCCACAGACATTGCTCCGGGGGACATCATCCCCGT
CGAGTCCAAGGgtctgcagctcctcctggTGGCCGACTACGACGGGAGTG
TATACTGCGTGGCCAATATCTGCCCCCACCTGGGCACCCCCCTGGACCAA
GGCTCCCTGGGAGACGGGACCATCGTCTGCCCCCTGCACAAGTCCGCCTT
CAGCCTCGAGACCGGTGAGCTCGTCGGCGACTGgtgcccttttccccccg
tcctcggtCCCCTGGTGCTGGGCAAACTCCAGCCCCCCCGTGACCTGGCT
GTCTTCCAGGTCCGCTCCCGGGGATCAGATATCGAGGCTCTGGTGAACGT
GAACCTGAAGGCAGACTTTGAGAGCAAGTACTGGGCGGGTCTTCTGGACG
CGCAGGGCAAGGCCACGGGGGACTACTACTAA
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Synonyms
Publications