EWM24009.1, cds6670 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM24009.1 vs. NCBI_GenBank
Match: gi|585105296|gb|EWM24009.1| (rieske (2fe-2s) region protein [Nannochloropsis gaditana]) HSP 1 Score: 394.815 bits (1013), Expect = 5.869e-139 Identity = 196/196 (100.00%), Postives = 196/196 (100.00%), Query Frame = 0
Query: 1 MKVAAILLALCATTQAFVPFAAKPAPRAAPVAAGKQNPDGSIRVKGVKAKDEWVPLLKATDIAPGDIIPVESKGLQLLLVADYDGSVYCVANICPHLGTPLDQGSLGDGTIVCPLHKSAFSLETGELVGDWCPFPPVLGPLVLGKLQPPRDLAVFQVRSRGSDIEALVNVNLKADFESKYWAGLLDAQGKATGDYY 196
MKVAAILLALCATTQAFVPFAAKPAPRAAPVAAGKQNPDGSIRVKGVKAKDEWVPLLKATDIAPGDIIPVESKGLQLLLVADYDGSVYCVANICPHLGTPLDQGSLGDGTIVCPLHKSAFSLETGELVGDWCPFPPVLGPLVLGKLQPPRDLAVFQVRSRGSDIEALVNVNLKADFESKYWAGLLDAQGKATGDYY
Sbjct: 1 MKVAAILLALCATTQAFVPFAAKPAPRAAPVAAGKQNPDGSIRVKGVKAKDEWVPLLKATDIAPGDIIPVESKGLQLLLVADYDGSVYCVANICPHLGTPLDQGSLGDGTIVCPLHKSAFSLETGELVGDWCPFPPVLGPLVLGKLQPPRDLAVFQVRSRGSDIEALVNVNLKADFESKYWAGLLDAQGKATGDYY 196
BLAST of EWM24009.1 vs. NCBI_GenBank
Match: gi|299473035|emb|CBN77428.1| (ferredoxin component [Ectocarpus siliculosus]) HSP 1 Score: 226.098 bits (575), Expect = 2.709e-72 Identity = 109/173 (63.01%), Postives = 134/173 (77.46%), Query Frame = 0
Query: 25 APRAAPVAAGKQNPDGSIRVKGVKAKDEWVPLLKATDIAPGDIIPVESKGLQLLLVADYDGSVYCVANICPHLGTPLDQGSLGD-GTIVCPLHKSAFSLETGELVGDWCPFPPVLGPLVLGKLQPPRDLAVFQVRSRGSDIEALVNVNLKADFESKYWAGLLDAQGKATGDYY 196
A R V G+ + + + VK K+EWVP+LK +DIAPG+++ V G +LL+ AD GS+Y ANICPHLGTPLDQGS+ G +VCPLHKSAFSLE G+LVGDWCPFPPVLGPLVLG+L+P +DLAVF VR+ G +I+ L+N NLK +FESKYW GLLDAQGKA+GDYY
Sbjct: 24 ATRLGAVTRGESSLN--MAVKKPAKKEEWVPVLKTSDIAPGELVGVTQDGQELLIAADLKGSIYATANICPHLGTPLDQGSINAAGALVCPLHKSAFSLEDGKLVGDWCPFPPVLGPLVLGRLEPAKDLAVFPVRASGGNIQVLINRNLKQEFESKYWTGLLDAQGKASGDYY 194
BLAST of EWM24009.1 vs. NCBI_GenBank
Match: gi|873232567|emb|CEM05161.1| (unnamed protein product [Vitrella brassicaformis CCMP3155]) HSP 1 Score: 210.305 bits (534), Expect = 9.550e-66 Identity = 94/145 (64.83%), Postives = 117/145 (80.69%), Query Frame = 0
Query: 52 EWVPLLKATDIAPGDIIPVESKGLQLLLVADYDGSVYCVANICPHLGTPLDQGSLGDGTIVCPLHKSAFSLETGELVGDWCPFPPVLGPLVLGKLQPPRDLAVFQVRSRGSDIEALVNVNLKADFESKYWAGLLDAQGKATGDYY 196
EW +L +IA GD++PV+ GL LLLVAD DGS+YCVAN+CPH+GTPL+QG + DG +VCPLH++AFSLE+GE+VGDWCPFPP++GPL GKL+PP++LA F VR RG IE LV+ + KA+FE YW GLLDAQGKA G YY
Sbjct: 79 EWKAVLNDDEIAAGDLVPVQVNGLNLLLVADADGSIYCVANVCPHIGTPLEQGEVKDGKVVCPLHRTAFSLESGEVVGDWCPFPPLVGPLT-GKLRPPQNLATFPVRQRGRTIEVLVDSSAKANFEKNYWKGLLDAQGKADGSYY 222
BLAST of EWM24009.1 vs. NCBI_GenBank
Match: gi|873235372|emb|CEM00673.1| (unnamed protein product [Vitrella brassicaformis CCMP3155]) HSP 1 Score: 208.764 bits (530), Expect = 4.032e-65 Identity = 93/146 (63.70%), Postives = 116/146 (79.45%), Query Frame = 0
Query: 51 DEWVPLLKATDIAPGDIIPVESKGLQLLLVADYDGSVYCVANICPHLGTPLDQGSLGDGTIVCPLHKSAFSLETGELVGDWCPFPPVLGPLVLGKLQPPRDLAVFQVRSRGSDIEALVNVNLKADFESKYWAGLLDAQGKATGDYY 196
EW +L +IA GD++PV+ GL LLLVAD DGS+YCVAN+CPH+GTPL+QG + DG ++CPLH++AFSLE GE+VG+WCPFPP++GPL GKL+PP++LA F VR RG IE LV+ N KA+FE YW GLLDAQGKA G YY
Sbjct: 78 QEWKAVLNDDEIAAGDLVPVQVNGLNLLLVADTDGSIYCVANVCPHIGTPLEQGEVKDGKVICPLHRTAFSLEKGEVVGEWCPFPPLVGPLT-GKLRPPQNLATFPVRQRGRTIEVLVDSNTKANFEKNYWKGLLDAQGKADGSYY 222
BLAST of EWM24009.1 vs. NCBI_GenBank
Match: gi|1189390316|gb|OSX77277.1| (hypothetical protein BU14_0153s0020 [Porphyra umbilicalis]) HSP 1 Score: 189.504 bits (480), Expect = 6.653e-58 Identity = 90/146 (61.64%), Postives = 107/146 (73.29%), Query Frame = 0
Query: 51 DEWVPLLKATDIAPGDIIPVESKGLQLLLVADYDGSVYCVANICPHLGTPLDQGSLGDGTIVCPLHKSAFSLETGELVGDWCPFPPVLGPLVLGKLQPPRDLAVFQVRSRGSDIEALVNVNLKADFESKYWAGLLDAQGKATGDYY 196
D WV LL +DI PG++ PV + G +LL DYDG VY +NICPHLGTPL G +GDG + C HKS++ L+TGEL G WCPFPPVLGPL LGKLQPP +LAVF VR IEAL++V+ FES YW GLLD++GKATGDYY
Sbjct: 54 DAWVQLLPTSDIEPGELKPVYTTGQNILLSCDYDGQVYASSNICPHLGTPLTDGEVGDGVLTCAQHKSSWDLKTGELSGTWCPFPPVLGPL-LGKLQPPSNLAVFPVRENSGYIEALLDVDAAKAFESNYWFGLLDSKGKATGDYY 198
BLAST of EWM24009.1 vs. NCBI_GenBank
Match: gi|1189390312|gb|OSX77273.1| (hypothetical protein BU14_0153s0016 [Porphyra umbilicalis]) HSP 1 Score: 189.504 bits (480), Expect = 7.339e-58 Identity = 90/146 (61.64%), Postives = 107/146 (73.29%), Query Frame = 0
Query: 51 DEWVPLLKATDIAPGDIIPVESKGLQLLLVADYDGSVYCVANICPHLGTPLDQGSLGDGTIVCPLHKSAFSLETGELVGDWCPFPPVLGPLVLGKLQPPRDLAVFQVRSRGSDIEALVNVNLKADFESKYWAGLLDAQGKATGDYY 196
D WV LL +DI PG++ PV + G +LL DYDG VY +NICPHLGTPL G +GDG + C HKS++ L+TGEL G WCPFPPVLGPL LGKLQPP +LAVF VR IEAL++V+ FES YW GLLD++GKATGDYY
Sbjct: 54 DAWVQLLPTSDIEPGELKPVYTTGQNILLSCDYDGQVYASSNICPHLGTPLTDGEVGDGVLTCAQHKSSWDLKTGELSGTWCPFPPVLGPL-LGKLQPPSNLAVFPVRENSGYIEALLDVDAAKAFESNYWFGLLDSKGKATGDYY 198
BLAST of EWM24009.1 vs. NCBI_GenBank
Match: gi|546302422|ref|XP_005711696.1| (Ferredoxin component [Chondrus crispus] >gi|507108017|emb|CDF41402.1| Ferredoxin component [Chondrus crispus]) HSP 1 Score: 188.734 bits (478), Expect = 1.282e-57 Identity = 88/154 (57.14%), Postives = 112/154 (72.73%), Query Frame = 0
Query: 43 RVKGVKAKDEWVPLLKATDIAPGDIIPVESKGLQLLLVADYDGSVYCVANICPHLGTPLDQGSLGDGTIVCPLHKSAFSLETGELVGDWCPFPPVLGPLVLGKLQPPRDLAVFQVRSRGSDIEALVNVNLKADFESKYWAGLLDAQGKATGDYY 196
R V +D WVPLL ++I+PG++ V + G Q+L+ DYDG VY ANICPHLGTPL GS+GDG + C HKS++ L TGEL GDWCPFPP++GP VLGKLQ PR L ++ VR IEAL++V+ KAD+E +YW G+LDA GKATG Y+
Sbjct: 35 RSSLVMKQDAWVPLLDTSEISPGELKGVVTAGQQILVSCDYDGQVYASANICPHLGTPLTDGSVGDGVLTCTQHKSSWDLSTGELAGDWCPFPPLIGP-VLGKLQGPRPLTIYPVRENAGRIEALLDVDAKADYEKEYWQGILDATGKATGAYH 187
BLAST of EWM24009.1 vs. NCBI_GenBank
Match: gi|545701745|ref|XP_005703205.1| (ferredoxin component (biphenyl dioxygenase, Rieske iron-sulfur component related protein) [Galdieria sulphuraria] >gi|452819630|gb|EME26685.1| ferredoxin component (biphenyl dioxygenase, Rieske iron-sulfur component related protein) [Galdieria sulphuraria]) HSP 1 Score: 186.422 bits (472), Expect = 1.882e-56 Identity = 88/166 (53.01%), Postives = 114/166 (68.67%), Query Frame = 0
Query: 31 VAAGKQNPDGSIRVKGVKAKDEWVPLLKATDIAPGDIIPVESKGLQLLLVADYDGSVYCVANICPHLGTPLDQGSLGDGTIVCPLHKSAFSLETGELVGDWCPFPPVLGPLVLGKLQPPRDLAVFQVRSRGSDIEALVNVNLKADFESKYWAGLLDAQGKATGDYY 196
V P SI +K + WV L+K +I PGD+ P G LL+V DYDG VYC AN+CPHLGTPLDQG +G GT++C H++++ L G+L G WCP+PP+LGPL LGKL+ P+DL+VF VR IEAL++++ +FES YW G+LDAQGKATG YY
Sbjct: 49 VGETTNTPRYSISMK----TEAWVKLVKTEEIKPGDLKPFFVAGQSLLVVCDYDGQVYCTANVCPHLGTPLDQGLIGSGTLICAQHRTSWRLSDGKLAGKWCPYPPILGPL-LGKLKVPQDLSVFPVREMNGFIEALIDLDAAKEFESNYWRGILDAQGKATGGYY 209
BLAST of EWM24009.1 vs. NCBI_GenBank
Match: gi|1189389672|gb|OSX76651.1| (hypothetical protein BU14_0183s0042 [Porphyra umbilicalis]) HSP 1 Score: 183.726 bits (465), Expect = 1.312e-55 Identity = 86/146 (58.90%), Postives = 108/146 (73.97%), Query Frame = 0
Query: 51 DEWVPLLKATDIAPGDIIPVESKGLQLLLVADYDGSVYCVANICPHLGTPLDQGSLGDGTIVCPLHKSAFSLETGELVGDWCPFPPVLGPLVLGKLQPPRDLAVFQVRSRGSDIEALVNVNLKADFESKYWAGLLDAQGKATGDYY 196
D WVPL++ + PG++ V + G +L+ D DG VY +NICPHLGTPL GS+GDG + C HKS++ L+TGEL G+WCPFPPVLGPL LGKLQ P LAVF VR + IEAL++++ A+FES YW GLLDAQGKA+GDYY
Sbjct: 49 DVWVPLVETAALEPGELKAVYTTGQSILVTCDIDGQVYASSNICPHLGTPLTDGSVGDGVLTCAQHKSSWDLKTGELAGEWCPFPPVLGPL-LGKLQAPSTLAVFPVREKSGTIEALLDMDAVAEFESDYWKGLLDAQGKASGDYY 193
BLAST of EWM24009.1 vs. NCBI_GenBank
Match: gi|873226799|emb|CEM20302.1| (unnamed protein product [Vitrella brassicaformis CCMP3155]) HSP 1 Score: 177.948 bits (450), Expect = 7.679e-53 Identity = 83/148 (56.08%), Postives = 109/148 (73.65%), Query Frame = 0
Query: 50 KDEWVPLLKATDIAPGDIIPVESKGLQLLLVAD-YDGSVYCVANICPHLGTPLDQGSLGDGTIVCPLHKSAFSLETGELVGDWCPFPPVLGPLVLGKLQPPRDLAVFQVRSRGSDIEALVNVNLKADFESKYWAGLLDAQGKATGDYY 196
K EW +L+ +IAPGD++P+E GL+LLLVA+ DG++YCV N P LGTPL++G + DG ++CP +++AF L TGE+VG+WCPFPPV+G + GKL P R L F VR +G I+ V+V KA+FE KYW GLLDAQGKA G YY
Sbjct: 89 KQEWKSVLEVDEIAPGDLMPIEVNGLKLLLVAEAKDGTIYCVGNASPPLGTPLEEGEVKDGKVICPNYRTAFDLSTGEVVGEWCPFPPVIG-FLTGKLSPQRPLNTFPVRQQGKMIQVQVDVMAKANFERKYWKGLLDAQGKADGGYY 235 The following BLAST results are available for this feature:
BLAST of EWM24009.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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