EWM24009.1, cds6670 (CDS) Nannochloropsis gaditana

Overview
NameEWM24009.1
Unique Namecds6670
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002469.1:255335..255386 +
Alignment locationCM002469.1:255938..256476 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM24009.1
Productrieske (2fe-2s) region protein
Orig transcript idgnl|cribi|Naga_100040g37.2007.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002469.1supercontigCM002469.1:255335..255386 +
CM002469.1supercontigCM002469.1:255938..256476 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding
GO:0003824catalytic activity
GO:0016491oxidoreductase activity
GO:00515372 iron, 2 sulfur cluster binding
Vocabulary: Biological Process
TermDefinition
GO:0008152metabolic process
GO:0055114oxidation-reduction process
Vocabulary: INTERPRO
TermDefinition
IPR017941Rieske_2Fe-2S
Homology
BLAST of EWM24009.1 vs. NCBI_GenBank
Match: gi|585105296|gb|EWM24009.1| (rieske (2fe-2s) region protein [Nannochloropsis gaditana])

HSP 1 Score: 394.815 bits (1013), Expect = 5.869e-139
Identity = 196/196 (100.00%), Postives = 196/196 (100.00%), Query Frame = 0
Query:    1 MKVAAILLALCATTQAFVPFAAKPAPRAAPVAAGKQNPDGSIRVKGVKAKDEWVPLLKATDIAPGDIIPVESKGLQLLLVADYDGSVYCVANICPHLGTPLDQGSLGDGTIVCPLHKSAFSLETGELVGDWCPFPPVLGPLVLGKLQPPRDLAVFQVRSRGSDIEALVNVNLKADFESKYWAGLLDAQGKATGDYY 196
            MKVAAILLALCATTQAFVPFAAKPAPRAAPVAAGKQNPDGSIRVKGVKAKDEWVPLLKATDIAPGDIIPVESKGLQLLLVADYDGSVYCVANICPHLGTPLDQGSLGDGTIVCPLHKSAFSLETGELVGDWCPFPPVLGPLVLGKLQPPRDLAVFQVRSRGSDIEALVNVNLKADFESKYWAGLLDAQGKATGDYY
Sbjct:    1 MKVAAILLALCATTQAFVPFAAKPAPRAAPVAAGKQNPDGSIRVKGVKAKDEWVPLLKATDIAPGDIIPVESKGLQLLLVADYDGSVYCVANICPHLGTPLDQGSLGDGTIVCPLHKSAFSLETGELVGDWCPFPPVLGPLVLGKLQPPRDLAVFQVRSRGSDIEALVNVNLKADFESKYWAGLLDAQGKATGDYY 196          
BLAST of EWM24009.1 vs. NCBI_GenBank
Match: gi|299473035|emb|CBN77428.1| (ferredoxin component [Ectocarpus siliculosus])

HSP 1 Score: 226.098 bits (575), Expect = 2.709e-72
Identity = 109/173 (63.01%), Postives = 134/173 (77.46%), Query Frame = 0
Query:   25 APRAAPVAAGKQNPDGSIRVKGVKAKDEWVPLLKATDIAPGDIIPVESKGLQLLLVADYDGSVYCVANICPHLGTPLDQGSLGD-GTIVCPLHKSAFSLETGELVGDWCPFPPVLGPLVLGKLQPPRDLAVFQVRSRGSDIEALVNVNLKADFESKYWAGLLDAQGKATGDYY 196
            A R   V  G+ + +  + VK    K+EWVP+LK +DIAPG+++ V   G +LL+ AD  GS+Y  ANICPHLGTPLDQGS+   G +VCPLHKSAFSLE G+LVGDWCPFPPVLGPLVLG+L+P +DLAVF VR+ G +I+ L+N NLK +FESKYW GLLDAQGKA+GDYY
Sbjct:   24 ATRLGAVTRGESSLN--MAVKKPAKKEEWVPVLKTSDIAPGELVGVTQDGQELLIAADLKGSIYATANICPHLGTPLDQGSINAAGALVCPLHKSAFSLEDGKLVGDWCPFPPVLGPLVLGRLEPAKDLAVFPVRASGGNIQVLINRNLKQEFESKYWTGLLDAQGKASGDYY 194          
BLAST of EWM24009.1 vs. NCBI_GenBank
Match: gi|873232567|emb|CEM05161.1| (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 210.305 bits (534), Expect = 9.550e-66
Identity = 94/145 (64.83%), Postives = 117/145 (80.69%), Query Frame = 0
Query:   52 EWVPLLKATDIAPGDIIPVESKGLQLLLVADYDGSVYCVANICPHLGTPLDQGSLGDGTIVCPLHKSAFSLETGELVGDWCPFPPVLGPLVLGKLQPPRDLAVFQVRSRGSDIEALVNVNLKADFESKYWAGLLDAQGKATGDYY 196
            EW  +L   +IA GD++PV+  GL LLLVAD DGS+YCVAN+CPH+GTPL+QG + DG +VCPLH++AFSLE+GE+VGDWCPFPP++GPL  GKL+PP++LA F VR RG  IE LV+ + KA+FE  YW GLLDAQGKA G YY
Sbjct:   79 EWKAVLNDDEIAAGDLVPVQVNGLNLLLVADADGSIYCVANVCPHIGTPLEQGEVKDGKVVCPLHRTAFSLESGEVVGDWCPFPPLVGPLT-GKLRPPQNLATFPVRQRGRTIEVLVDSSAKANFEKNYWKGLLDAQGKADGSYY 222          
BLAST of EWM24009.1 vs. NCBI_GenBank
Match: gi|873235372|emb|CEM00673.1| (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 208.764 bits (530), Expect = 4.032e-65
Identity = 93/146 (63.70%), Postives = 116/146 (79.45%), Query Frame = 0
Query:   51 DEWVPLLKATDIAPGDIIPVESKGLQLLLVADYDGSVYCVANICPHLGTPLDQGSLGDGTIVCPLHKSAFSLETGELVGDWCPFPPVLGPLVLGKLQPPRDLAVFQVRSRGSDIEALVNVNLKADFESKYWAGLLDAQGKATGDYY 196
             EW  +L   +IA GD++PV+  GL LLLVAD DGS+YCVAN+CPH+GTPL+QG + DG ++CPLH++AFSLE GE+VG+WCPFPP++GPL  GKL+PP++LA F VR RG  IE LV+ N KA+FE  YW GLLDAQGKA G YY
Sbjct:   78 QEWKAVLNDDEIAAGDLVPVQVNGLNLLLVADTDGSIYCVANVCPHIGTPLEQGEVKDGKVICPLHRTAFSLEKGEVVGEWCPFPPLVGPLT-GKLRPPQNLATFPVRQRGRTIEVLVDSNTKANFEKNYWKGLLDAQGKADGSYY 222          
BLAST of EWM24009.1 vs. NCBI_GenBank
Match: gi|1189390316|gb|OSX77277.1| (hypothetical protein BU14_0153s0020 [Porphyra umbilicalis])

HSP 1 Score: 189.504 bits (480), Expect = 6.653e-58
Identity = 90/146 (61.64%), Postives = 107/146 (73.29%), Query Frame = 0
Query:   51 DEWVPLLKATDIAPGDIIPVESKGLQLLLVADYDGSVYCVANICPHLGTPLDQGSLGDGTIVCPLHKSAFSLETGELVGDWCPFPPVLGPLVLGKLQPPRDLAVFQVRSRGSDIEALVNVNLKADFESKYWAGLLDAQGKATGDYY 196
            D WV LL  +DI PG++ PV + G  +LL  DYDG VY  +NICPHLGTPL  G +GDG + C  HKS++ L+TGEL G WCPFPPVLGPL LGKLQPP +LAVF VR     IEAL++V+    FES YW GLLD++GKATGDYY
Sbjct:   54 DAWVQLLPTSDIEPGELKPVYTTGQNILLSCDYDGQVYASSNICPHLGTPLTDGEVGDGVLTCAQHKSSWDLKTGELSGTWCPFPPVLGPL-LGKLQPPSNLAVFPVRENSGYIEALLDVDAAKAFESNYWFGLLDSKGKATGDYY 198          
BLAST of EWM24009.1 vs. NCBI_GenBank
Match: gi|1189390312|gb|OSX77273.1| (hypothetical protein BU14_0153s0016 [Porphyra umbilicalis])

HSP 1 Score: 189.504 bits (480), Expect = 7.339e-58
Identity = 90/146 (61.64%), Postives = 107/146 (73.29%), Query Frame = 0
Query:   51 DEWVPLLKATDIAPGDIIPVESKGLQLLLVADYDGSVYCVANICPHLGTPLDQGSLGDGTIVCPLHKSAFSLETGELVGDWCPFPPVLGPLVLGKLQPPRDLAVFQVRSRGSDIEALVNVNLKADFESKYWAGLLDAQGKATGDYY 196
            D WV LL  +DI PG++ PV + G  +LL  DYDG VY  +NICPHLGTPL  G +GDG + C  HKS++ L+TGEL G WCPFPPVLGPL LGKLQPP +LAVF VR     IEAL++V+    FES YW GLLD++GKATGDYY
Sbjct:   54 DAWVQLLPTSDIEPGELKPVYTTGQNILLSCDYDGQVYASSNICPHLGTPLTDGEVGDGVLTCAQHKSSWDLKTGELSGTWCPFPPVLGPL-LGKLQPPSNLAVFPVRENSGYIEALLDVDAAKAFESNYWFGLLDSKGKATGDYY 198          
BLAST of EWM24009.1 vs. NCBI_GenBank
Match: gi|546302422|ref|XP_005711696.1| (Ferredoxin component [Chondrus crispus] >gi|507108017|emb|CDF41402.1| Ferredoxin component [Chondrus crispus])

HSP 1 Score: 188.734 bits (478), Expect = 1.282e-57
Identity = 88/154 (57.14%), Postives = 112/154 (72.73%), Query Frame = 0
Query:   43 RVKGVKAKDEWVPLLKATDIAPGDIIPVESKGLQLLLVADYDGSVYCVANICPHLGTPLDQGSLGDGTIVCPLHKSAFSLETGELVGDWCPFPPVLGPLVLGKLQPPRDLAVFQVRSRGSDIEALVNVNLKADFESKYWAGLLDAQGKATGDYY 196
            R   V  +D WVPLL  ++I+PG++  V + G Q+L+  DYDG VY  ANICPHLGTPL  GS+GDG + C  HKS++ L TGEL GDWCPFPP++GP VLGKLQ PR L ++ VR     IEAL++V+ KAD+E +YW G+LDA GKATG Y+
Sbjct:   35 RSSLVMKQDAWVPLLDTSEISPGELKGVVTAGQQILVSCDYDGQVYASANICPHLGTPLTDGSVGDGVLTCTQHKSSWDLSTGELAGDWCPFPPLIGP-VLGKLQGPRPLTIYPVRENAGRIEALLDVDAKADYEKEYWQGILDATGKATGAYH 187          
BLAST of EWM24009.1 vs. NCBI_GenBank
Match: gi|545701745|ref|XP_005703205.1| (ferredoxin component (biphenyl dioxygenase, Rieske iron-sulfur component related protein) [Galdieria sulphuraria] >gi|452819630|gb|EME26685.1| ferredoxin component (biphenyl dioxygenase, Rieske iron-sulfur component related protein) [Galdieria sulphuraria])

HSP 1 Score: 186.422 bits (472), Expect = 1.882e-56
Identity = 88/166 (53.01%), Postives = 114/166 (68.67%), Query Frame = 0
Query:   31 VAAGKQNPDGSIRVKGVKAKDEWVPLLKATDIAPGDIIPVESKGLQLLLVADYDGSVYCVANICPHLGTPLDQGSLGDGTIVCPLHKSAFSLETGELVGDWCPFPPVLGPLVLGKLQPPRDLAVFQVRSRGSDIEALVNVNLKADFESKYWAGLLDAQGKATGDYY 196
            V      P  SI +K     + WV L+K  +I PGD+ P    G  LL+V DYDG VYC AN+CPHLGTPLDQG +G GT++C  H++++ L  G+L G WCP+PP+LGPL LGKL+ P+DL+VF VR     IEAL++++   +FES YW G+LDAQGKATG YY
Sbjct:   49 VGETTNTPRYSISMK----TEAWVKLVKTEEIKPGDLKPFFVAGQSLLVVCDYDGQVYCTANVCPHLGTPLDQGLIGSGTLICAQHRTSWRLSDGKLAGKWCPYPPILGPL-LGKLKVPQDLSVFPVREMNGFIEALIDLDAAKEFESNYWRGILDAQGKATGGYY 209          
BLAST of EWM24009.1 vs. NCBI_GenBank
Match: gi|1189389672|gb|OSX76651.1| (hypothetical protein BU14_0183s0042 [Porphyra umbilicalis])

HSP 1 Score: 183.726 bits (465), Expect = 1.312e-55
Identity = 86/146 (58.90%), Postives = 108/146 (73.97%), Query Frame = 0
Query:   51 DEWVPLLKATDIAPGDIIPVESKGLQLLLVADYDGSVYCVANICPHLGTPLDQGSLGDGTIVCPLHKSAFSLETGELVGDWCPFPPVLGPLVLGKLQPPRDLAVFQVRSRGSDIEALVNVNLKADFESKYWAGLLDAQGKATGDYY 196
            D WVPL++   + PG++  V + G  +L+  D DG VY  +NICPHLGTPL  GS+GDG + C  HKS++ L+TGEL G+WCPFPPVLGPL LGKLQ P  LAVF VR +   IEAL++++  A+FES YW GLLDAQGKA+GDYY
Sbjct:   49 DVWVPLVETAALEPGELKAVYTTGQSILVTCDIDGQVYASSNICPHLGTPLTDGSVGDGVLTCAQHKSSWDLKTGELAGEWCPFPPVLGPL-LGKLQAPSTLAVFPVREKSGTIEALLDMDAVAEFESDYWKGLLDAQGKASGDYY 193          
BLAST of EWM24009.1 vs. NCBI_GenBank
Match: gi|873226799|emb|CEM20302.1| (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 177.948 bits (450), Expect = 7.679e-53
Identity = 83/148 (56.08%), Postives = 109/148 (73.65%), Query Frame = 0
Query:   50 KDEWVPLLKATDIAPGDIIPVESKGLQLLLVAD-YDGSVYCVANICPHLGTPLDQGSLGDGTIVCPLHKSAFSLETGELVGDWCPFPPVLGPLVLGKLQPPRDLAVFQVRSRGSDIEALVNVNLKADFESKYWAGLLDAQGKATGDYY 196
            K EW  +L+  +IAPGD++P+E  GL+LLLVA+  DG++YCV N  P LGTPL++G + DG ++CP +++AF L TGE+VG+WCPFPPV+G  + GKL P R L  F VR +G  I+  V+V  KA+FE KYW GLLDAQGKA G YY
Sbjct:   89 KQEWKSVLEVDEIAPGDLMPIEVNGLKLLLVAEAKDGTIYCVGNASPPLGTPLEEGEVKDGKVICPNYRTAFDLSTGEVVGEWCPFPPVIG-FLTGKLSPQRPLNTFPVRQQGKMIQVQVDVMAKANFERKYWKGLLDAQGKADGGYY 235          
The following BLAST results are available for this feature:
BLAST of EWM24009.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585105296|gb|EWM24009.1|5.869e-139100.00rieske (2fe-2s) region protein [Nannochloropsis ga... [more]
gi|299473035|emb|CBN77428.1|2.709e-7263.01ferredoxin component [Ectocarpus siliculosus][more]
gi|873232567|emb|CEM05161.1|9.550e-6664.83unnamed protein product [Vitrella brassicaformis C... [more]
gi|873235372|emb|CEM00673.1|4.032e-6563.70unnamed protein product [Vitrella brassicaformis C... [more]
gi|1189390316|gb|OSX77277.1|6.653e-5861.64hypothetical protein BU14_0153s0020 [Porphyra umbi... [more]
gi|1189390312|gb|OSX77273.1|7.339e-5861.64hypothetical protein BU14_0153s0016 [Porphyra umbi... [more]
gi|546302422|ref|XP_005711696.1|1.282e-5757.14Ferredoxin component [Chondrus crispus] >gi|507108... [more]
gi|545701745|ref|XP_005703205.1|1.882e-5653.01ferredoxin component (biphenyl dioxygenase, Rieske... [more]
gi|1189389672|gb|OSX76651.1|1.312e-5558.90hypothetical protein BU14_0183s0042 [Porphyra umbi... [more]
gi|873226799|emb|CEM20302.1|7.679e-5356.08unnamed protein product [Vitrella brassicaformis C... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6686rna6686Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications