rna6685, rna6685 (mRNA) Nannochloropsis gaditana

Overview
Namerna6685
Unique Namerna6685
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1619
Alignment locationCM002469.1:253195..254503 -

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Properties
Property NameValue
Productribonuclease h2 subunit a
Orig transcript idgnl|cribi|Naga_100040g36.2017.mrna
Orig protein idgnl|cribi|Naga_100040g36.2017
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002469.1supercontigCM002469.1:253195..254503 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100040g36gene6463Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna6685rna6685-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM24019.1cds6669Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna6685 ID=rna6685|Name=rna6685|organism=Nannochloropsis gaditana|type=mRNA|length=1619bp
ATGGGCAAACGACAACGAGGTCAAGGGCCTCGTCGACCGGAAAGCGGCGT
GGTCAAGCAGGAATACGTCAATGCGTCCGGGCTTGTTGCATATCAATCGG
ATTCCGAGGCAGATGATGAGGATGTAGCCCCCGCGGAGGCAGTCGGAAGT
ATTGCGAGGCACGTGGTTCCTCGAGGGCATCTTATCAAAAACGGCCCTGA
AGTACAGAACACGGGACAGGCGGCCAAGGACGAGGAATATGCTGATCCTT
TGAAAGCAGCTGCAGACGTGGAAGATCTGTTTAAGAGTCTTGAGGAAGAA
TTTTTGCAAGGTGCATCCCCACAGAGAGAAGTCGTGAAAGCAGCAGCAAC
GGCGTCGATTGGGGCAAGACAAACAGATAAAAAGTATCTTCCAGCGCATG
CTTTACGACAAAAAATCGCCCATACGCCTCTTGTTATGTTCAGTGAAGCA
GAGCTCAGGCGCATAAGTGGGAAAGACTCGTCCCTGCGAGATCTTGTGGT
CGAGTGTCTTGGGAAGATGAATGCCATGTTAGCCAAATACCTAAACGCAA
CGAAATCCGATCGCTCCGAGGCAGATAAGTTATCAGGAGATGGGAAATCG
GGATTTGTCGGGGTGGAAAATTGGGAAGTTGAGTTTATCAAGCTGTCGGC
CCGTGTGGAGGATTGGAGGGCAGGCTTGCTGCCGTCGTCCTCCCTTGTGC
GTCGCGTCAGGGAGTTGGGAGCGACCGTTGCGGCACAAGTGCTGGCGGAG
GAGACGCTATGTCATGGGCTAAAAGAAGCTGTGAAGAAGAAGGAGAAGGA
GGCGGAGGCGTCCGGGGCTTCAATGACGGAAGTTGCTGGGGTGACTCACA
CGAGCACCATAGGCCCCGTGGCCGCCCCAACCACGCCCGTGTGGAGCACT
GCCTACGATCCCACGTACCAAAGTTACTACTGGCACAACGCAGTCACGGG
TGAGACGCGGTGGGAACGCCCCTCGGGTGCAGGCACGGAGATGGCGGGCG
CGTCAAGTGAATCCTTTGCCGCGCCCTCCACCTCCACCACGACTCCTGAG
GCCGCTCCCGTCCTTCCCTTCGCCAATGCCCTGCCAGTGCAGACGCAGAA
CTCTCTGCTCCTGTACGTAGGTGATCCGCCGCTCTTGCAGACAGGTTCGG
AGGCCTCTAGCCTCTTCCGAGGCGCGGGTCTTAGGCACGTCCGCGCCCTG
GGGCAGGGATATTTCGTCGTCTCCTTCCCTTCCAAGGCCGCCGTGGTGGA
GGCTTTGATGCACCAGGCAACGACCGCTGGCACCGTAACCATGGATGTGC
AGAGTGCGCAAAGGGGAGAGAAGCGGAGAAGGGAGGAGCAGGAAGCGAGC
AAGGATGTGGTCGAGCGCGCGGGGCGGGAGTGGATCCCGGGTGACAAGTC
CACGTTTGTCCGCCTGGTCACGGAGGCGGACGAACCGGGCAAGATCGGTG
CGATGCCGGTAGTTGCGGTGGGAGGGAAGGGGGAGGCGGGCGATGGGAGA
GACGAGGATGGGCCGGGGGGCGAGCGAGAGGGCAACGCTGTAATAATGGG
CCAGGGAAACGGAGGCGATTGGCAAGCACCCGTAACTACGTAAAACAAAA
GTACAACAAAAACGAATGC
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protein sequence of rna6685

>rna6685-protein ID=rna6685-protein|Name=rna6685|organism=Nannochloropsis gaditana|type=polypeptide|length=347bp
MAADDTPSTSTNNGTLNAENRSDEPICLTRAEQQEAEDDAKGFPKNRFKH
GINKLWHIPPALKTGQPVKLGIDEAGRGPVLGPMVYAAAFWKVEEDDAMI
AMGFDDSKALDEKTRDGLFQRMLRTHEQVGWVIHSIPATEVAGKMLMREP
TSLNKISHDSAADMLSLVLAEGVCVTEVFVDTVGDPDTYQRKLEGLFGHH
TPAIAFTVAKKADSLYKTVSAASIAAKVTRDRAIRDWVWEEDFPQALSTD
FGSGYPGDARCAEWLRKNSNPVFGFPSLVRFSWSTTRELMEKECVGVEWE
EEEENGGLPAGTASIEAFVKPKADGPKKARKRAKYFQQRGMETVGDF
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mRNA from alignment at CM002469.1:253195..254503-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna6685 ID=rna6685|Name=rna6685|organism=Nannochloropsis gaditana|type=mRNA|length=1309bp|location=Sequence derived from alignment at CM002469.1:253195..254503- (Nannochloropsis gaditana)
CCACAGGTGTATTTTTATCCCGCGAGAGGATTATACCTCACATCACTATG
GCTGCTGATGACACGCCATCGACCAGCACCAACAACGGCACTCTCAATGC
AGAAAATAGATCGGACGAACCCATATGTCTCACCCGAGCGGAGCAGCAGG
AGGCAGAAGACGACGCTAAAGGCTTCCCCAAAAATCGTTTCAAGCACGGA
ATCAACAAGCTATGGCACATTCCACCTGCTCTCAAGACCGGCCAGCCAGT
TAAATTGGGTATTGACGAAGCAGGTAGAGGTCCTGTTTTAGGGCCAATGG
TCTACGCTGCTGCATTTTGGAAAGTAGAGGAGGTGAGGGTGTCGTGAAGA
GAGGAGGTGCGACACGGGGGGGGAAGAGATGTGGATGGACGCGAAGGATT
TATGTCTGCACCTTTAATCTTGAATACTTTTTTTATAAAAATGAGGACAG
GACGACGCCATGATCGCCATGGGATTCGATGACTCAAAGGCTTTGGACGA
AAAAACTCGTGATGGGCTTTTCCAGCGTATGCTGCGCACGCATGAGCAAG
TGGGTTGGGTCATACACTCTATTCCAGCCACCGAGGTGGCGGGCAAGATG
CTAATGAGAGAGCCAACGTCCCTGAACAAGATCAGCCATGACTCGGCGGC
GGACATGCTCTCCTTGGTTCTCGCAGAAGGGGTGTGTGTCACCGAGGTGT
TCGTGGACACAGTGGGCGACCCTGATACCTATCAGAGGAAACTGGAAGGC
TTGTTTGGGCACCACACCCCCGCGATCGCCTTCACAGTGGCGAAGAAAGC
GGACAGCCTCTACAAGACGGTGAGCGCCGCCTCCATCGCGGCTAAAGTGA
CGCGGGACAGGGCCATCAGGGACTGGGTCTGGGAGGAAGACTTCCCGCAG
GCCTTGTCGACAGACTTTGGCTCCGGGTATCCTGGAGACGCGCGCTGTGC
GGAGTGGCTAAGGAAGAATAGCAACCCTGTCTTCGGGTTCCCATCCTTGG
TACGCTTCAGCTGGTCGACAACCCGGGAGTTGATGGAGAAGGAGTGCGTG
GGGGTGGAGTGGGAGGAGGAGGAAGAAAACGGGGGCTTGCCCGCGGGGAC
AGCGTCGATCGAGGCCTTCGTCAAACCCAAGGCGGACGGCCCCAAAAAGG
CGCGAAAGAGGGCCAAATACTTTCAGCAGAGGGGCATGGAGACAGTGGGG
GACTTTTGATTTGAGAGGGGGCAGAGCAGCAAGGGGGGAAGAGGTATGAA
TCACAGTGACGTGTGGTTTTGAACCAGTGACCTGTGGTATCGAAACGGTG
CCTTCAGAT
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Coding sequence (CDS) from alignment at CM002469.1:253195..254503-

>rna6685 ID=rna6685|Name=rna6685|organism=Nannochloropsis gaditana|type=CDS|length=2088bp|location=Sequence derived from alignment at CM002469.1:253195..254503- (Nannochloropsis gaditana)
GACGACGCCATGATCGCCATGGGATTCGATGACTCAAAGGCTTTGGACGA
AAAAACTCGTGATGGGCTTTTCCAGCGTATGCTGCGCACGCATGAGCAAG
TGGGTTGGGTCATACACTCTATTCCAGCCACCGAGGTGGCGGGCAAGATG
CTAATGAGAGAGCCAACGTCCCTGAACAAGATCAGCCATGACTCGGCGGC
GGACATGCTCTCCTTGGTTCTCGCAGAAGGGGTGTGTGTCACCGAGGTGT
TCGTGGACACAGTGGGCGACCCTGATACCTATCAGAGGAAACTGGAAGGC
TTGTTTGGGCACCACACCCCCGCGATCGCCTTCACAGTGGCGAAGAAAGC
GGACAGCCTCTACAAGACGGTGAGCGCCGCCTCCATCGCGGCTAAAGTGA
CGCGGGACAGGGCCATCAGGGACTGGGTCTGGGAGGAAGACTTCCCGCAG
GCCTTGTCGACAGACTTTGGCTCCGGGTATCCTGGAGACGCGCGCTGTGC
GGAGTGGCTAAGGAAGAATAGCAACCCTGTCTTCGGGTTCCCATCCTTGG
TACGCTTCAGCTGGTCGACAACCCGGGAGTTGATGGAGAAGGAGTGCGTG
GGGGTGGAGTGGGAGGAGGAGGAAGAAAACGGGGGCTTGCCCGCGGGGAC
AGCGTCGATCGAGGCCTTCGTCAAACCCAAGGCGGACGGCCCCAAAAAGG
CGCGAAAGAGGGCCAAATACTTTCAGCAGAGGGGCATGGAGACAGTGGGG
GACTTTTGAATGGCTGCTGATGACACGCCATCGACCAGCACCAACAACGG
CACTCTCAATGCAGAAAATAGATCGGACGAACCCATATGTCTCACCCGAG
CGGAGCAGCAGGAGGCAGAAGACGACGCTAAAGGCTTCCCCAAAAATCGT
TTCAAGCACGGAATCAACAAGCTATGGCACATTCCACCTGCTCTCAAGAC
CGGCCAGCCAGTTAAATTGGGTATTGACGAAGCAGGTAGAGGTCCTGTTT
TAGGGCCAATGGTCTACGCTGCTGCATTTTGGAAAGTAGAGGAGGACGAC
GCCATGATCGCCATGGGATTCGATGACTCAAAGGCTTTGGACGAAAAAAC
TCGTGATGGGCTTTTCCAGCGTATGCTGCGCACGCATGAGCAAGTGGGTT
GGGTCATACACTCTATTCCAGCCACCGAGGTGGCGGGCAAGATGCTAATG
AGAGAGCCAACGTCCCTGAACAAGATCAGCCATGACTCGGCGGCGGACAT
GCTCTCCTTGGTTCTCGCAGAAGGGGTGTGTGTCACCGAGGTGTTCGTGG
ACACAGTGGGCGACCCTGATACCTATCAGAGGAAACTGGAAGGCTTGTTT
GGGCACCACACCCCCGCGATCGCCTTCACAGTGGCGAAGAAAGCGGACAG
CCTCTACAAGACGGTGAGCGCCGCCTCCATCGCGGCTAAAGTGACGCGGG
ACAGGGCCATCAGGGACTGGGTCTGGGAGGAAGACTTCCCGCAGGCCTTG
TCGACAGACTTTGGCTCCGGGTATCCTGGAGACGCGCGCTGTGCGGAGTG
GCTAAGGAAGAATAGCAACCCTGTCTTCGGGTTCCCATCCTTGGTACGCT
TCAGCTGGTCGACAACCCGGGAGTTGATGGAGAAGGAGTGCGTGGGGGTG
GAGTGGGAGGAGGAGGAAGAAAACGGGGGCTTGCCCGCGGGGACAGCGTC
GATCGAGGCCTTCGTCAAACCCAAGGCGGACGGCCCCAAAAAGGCGCGAA
AGAGGGCCAAATACTTTCAGCAGAGGGGCATGGAGACAGTGGGGGACTTT
TGAATGGCTGCTGATGACACGCCATCGACCAGCACCAACAACGGCACTCT
CAATGCAGAAAATAGATCGGACGAACCCATATGTCTCACCCGAGCGGAGC
AGCAGGAGGCAGAAGACGACGCTAAAGGCTTCCCCAAAAATCGTTTCAAG
CACGGAATCAACAAGCTATGGCACATTCCACCTGCTCTCAAGACCGGCCA
GCCAGTTAAATTGGGTATTGACGAAGCAGGTAGAGGTCCTGTTTTAGGGC
CAATGGTCTACGCTGCTGCATTTTGGAAAGTAGAGGAG
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Synonyms
Publications