EWM24019.1, cds6669 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM24019.1 vs. NCBI_GenBank
Match: gi|585105306|gb|EWM24019.1| (ribonuclease h2 subunit a [Nannochloropsis gaditana]) HSP 1 Score: 719.924 bits (1857), Expect = 0.000e+0 Identity = 347/347 (100.00%), Postives = 347/347 (100.00%), Query Frame = 0
Query: 1 MAADDTPSTSTNNGTLNAENRSDEPICLTRAEQQEAEDDAKGFPKNRFKHGINKLWHIPPALKTGQPVKLGIDEAGRGPVLGPMVYAAAFWKVEEDDAMIAMGFDDSKALDEKTRDGLFQRMLRTHEQVGWVIHSIPATEVAGKMLMREPTSLNKISHDSAADMLSLVLAEGVCVTEVFVDTVGDPDTYQRKLEGLFGHHTPAIAFTVAKKADSLYKTVSAASIAAKVTRDRAIRDWVWEEDFPQALSTDFGSGYPGDARCAEWLRKNSNPVFGFPSLVRFSWSTTRELMEKECVGVEWEEEEENGGLPAGTASIEAFVKPKADGPKKARKRAKYFQQRGMETVGDF 347
MAADDTPSTSTNNGTLNAENRSDEPICLTRAEQQEAEDDAKGFPKNRFKHGINKLWHIPPALKTGQPVKLGIDEAGRGPVLGPMVYAAAFWKVEEDDAMIAMGFDDSKALDEKTRDGLFQRMLRTHEQVGWVIHSIPATEVAGKMLMREPTSLNKISHDSAADMLSLVLAEGVCVTEVFVDTVGDPDTYQRKLEGLFGHHTPAIAFTVAKKADSLYKTVSAASIAAKVTRDRAIRDWVWEEDFPQALSTDFGSGYPGDARCAEWLRKNSNPVFGFPSLVRFSWSTTRELMEKECVGVEWEEEEENGGLPAGTASIEAFVKPKADGPKKARKRAKYFQQRGMETVGDF
Sbjct: 1 MAADDTPSTSTNNGTLNAENRSDEPICLTRAEQQEAEDDAKGFPKNRFKHGINKLWHIPPALKTGQPVKLGIDEAGRGPVLGPMVYAAAFWKVEEDDAMIAMGFDDSKALDEKTRDGLFQRMLRTHEQVGWVIHSIPATEVAGKMLMREPTSLNKISHDSAADMLSLVLAEGVCVTEVFVDTVGDPDTYQRKLEGLFGHHTPAIAFTVAKKADSLYKTVSAASIAAKVTRDRAIRDWVWEEDFPQALSTDFGSGYPGDARCAEWLRKNSNPVFGFPSLVRFSWSTTRELMEKECVGVEWEEEEENGGLPAGTASIEAFVKPKADGPKKARKRAKYFQQRGMETVGDF 347
BLAST of EWM24019.1 vs. NCBI_GenBank
Match: gi|299473412|emb|CBN77810.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 271.166 bits (692), Expect = 6.176e-86 Identity = 160/298 (53.69%), Postives = 190/298 (63.76%), Query Frame = 0
Query: 58 IPP---ALKTGQPVKLGIDEAGRGPVLGPMVYAAAFWKVEEDDAMIAMGFDDSKALDEKTRDGLFQRMLRTHEQVGWVIHSIPATEVAGKMLMREPTSLNKISHDSAADMLSLVLAEGVCVTEVFVDTVGDPDTYQRKLEGLFGHHTPAIAFTVAKKADSLYKTVSAASIAAKVTRDRAIRDWVWEE---DFPQALSTDFGSGYPGDARCAEWLRKNSNPVFGFPSLVRFSWSTTRELMEKECVG-VEWEEEEENGGLPAGTASIEAF-VKPKADGPKKARKRAKYFQQRGMETVGDF 347
IPP L V LGIDEAGRGPVLGPM Y AA+W +D M A GFDDSKAL R LF R+ RT E VGWV+ I A E++ KM + P SLN ISHD+AA+++ V A GV VT+V+VDTVGDP YQ KLE FG I F VAKKADSLYKT SAASI AKVTRDR + W W E DF + +GSGYPGD +C +WL N +PVFGFP + RFSW TT+E+++ V+WEEE + AG SI +F V+PK KKA RA F +RG+E V F
Sbjct: 37 IPPRCRGLDGEGGVILGIDEAGRGPVLGPMTYGAAYWSCADDKEMSAKGFDDSKALTSDQRTSLFDRIDRTPE-VGWVLRLISARELSDKMCRKVPYSLNVISHDAAAELIRAVQARGVKVTQVYVDTVGDPAFYQSKLEKEFGK---GIKFVVAKKADSLYKTASAASIVAKVTRDRIVEGWQWSEPNLDFSE--DRKYGSGYPGDEKCKKWLESNVDPVFGFPDICRFSWGTTKEILKGPTRKRVDWEEEPDEEA--AGMNSIASFMVQPK----KKA--RANLFVKRGLELVDTF 320
BLAST of EWM24019.1 vs. NCBI_GenBank
Match: gi|568023979|gb|ETL98023.1| (ribonuclease HII [Phytophthora parasitica]) HSP 1 Score: 266.544 bits (680), Expect = 2.825e-84 Identity = 146/291 (50.17%), Postives = 188/291 (64.60%), Query Frame = 0
Query: 59 PPALKTGQPVKLGIDEAGRGPVLGPMVYAAAFWKVEEDDAMIAMGFDDSKALDEKTRDGLFQRMLRTHEQVGWVIHSIPATEVAGKMLMREPTSLNKISHDSAADMLSLVLAEGVCVTEVFVDTVGDPDTYQRKLEGLFGHHTPAIAFTVAKKADSLYKTVSAASIAAKVTRDRAIRDWVWEEDFPQALSTDFGSGYPGDARCAEWLRKNSNPVFGFPSLVRFSWSTTRELMEKECVGVEW--EEEEENGGLPAGTASIEAFVKPKADGPKKARKRAKYFQQRGMETVGDF 347
P + G PV LGIDEAGRGPV+GPMVY AA+W V ++DAM A+GFDDSKAL ++R LF++M T E +GW++ I A E++ KM R+ ++LN++S D+A +++ V +G V +VFVDTVGDP YQ L H I F V KKADSL+K VSAASIAAKVTRDR I DW+WE + L TDFGSGYP D + WL + + VF FP+++RFSW T +EK V VEW E++ E P GT SI +F+ K A RA +F QR M+ V DF
Sbjct: 19 PASCLNGVPVMLGIDEAGRGPVMGPMVYGAAYWPVADNDAMSALGFDDSKALSAESRAQLFEKMQST-EGLGWIVRLISAAEISDKM-QRQTSNLNEMSRDAAIQLINEVQKKGAVVKKVFVDTVGDPRWYQTFLT---KHFNGTIEFRVEKKADSLFKVVSAASIAAKVTRDRVITDWIWESPALE-LPTDFGSGYPSDPKTKAWLAAHVDQVFVFPNIIRFSWGTVEPFIEK-AVKVEWPHEKDLEKANAPTGTQSITSFLAKPVQKAKPA-TRAAFFTQRNMQDVTDF 301
BLAST of EWM24019.1 vs. NCBI_GenBank
Match: gi|570332378|gb|ETO80326.1| (ribonuclease HII [Phytophthora parasitica P1976] >gi|570991560|gb|ETP49269.1| ribonuclease HII [Phytophthora parasitica P10297]) HSP 1 Score: 265.774 bits (678), Expect = 5.597e-84 Identity = 146/291 (50.17%), Postives = 188/291 (64.60%), Query Frame = 0
Query: 59 PPALKTGQPVKLGIDEAGRGPVLGPMVYAAAFWKVEEDDAMIAMGFDDSKALDEKTRDGLFQRMLRTHEQVGWVIHSIPATEVAGKMLMREPTSLNKISHDSAADMLSLVLAEGVCVTEVFVDTVGDPDTYQRKLEGLFGHHTPAIAFTVAKKADSLYKTVSAASIAAKVTRDRAIRDWVWEEDFPQALSTDFGSGYPGDARCAEWLRKNSNPVFGFPSLVRFSWSTTRELMEKECVGVEW--EEEEENGGLPAGTASIEAFVKPKADGPKKARKRAKYFQQRGMETVGDF 347
P + G PV LGIDEAGRGPV+GPMVY AA+W V ++DAM A+GFDDSKAL ++R LF++M T E +GW++ I A E++ KM R+ ++LN++S D+A +++ V +G V +VFVDTVGDP YQ L H I F V KKADSL+K VSAASIAAKVTRDR I DW+WE + L TDFGSGYP D + WL + + VF FP+++RFSW T +EK V VEW E++ E P GT SI +F+ K A RA +F QR M+ V DF
Sbjct: 19 PASCLNGVPVMLGIDEAGRGPVMGPMVYGAAYWPVADNDAMSALGFDDSKALSAESRAQLFEKMQST-EGLGWIVRLISAAEISDKM-QRQTSNLNEMSRDAAIQLINEVQKKGAVVKKVFVDTVGDPRWYQTFLT---KHFNGTIEFRVEKKADSLFKVVSAASIAAKVTRDRVITDWMWESPALE-LPTDFGSGYPSDPKTKAWLATHVDQVFVFPNIIRFSWGTVEPFIEK-AVKVEWPHEKDLEKANAPTGTQSITSFLAKPVQKAKPA-TRAAFFTQRNMQDVTDF 301
BLAST of EWM24019.1 vs. NCBI_GenBank
Match: gi|675187119|ref|XP_008902444.1| (ribonuclease HII [Phytophthora parasitica INRA-310] >gi|566028660|gb|ETI51571.1| ribonuclease HII [Phytophthora parasitica P1569] >gi|567966000|gb|ETK91459.1| ribonuclease HII [Phytophthora parasitica] >gi|567994712|gb|ETL44864.1| ribonuclease HII [Phytophthora parasitica] >gi|568054416|gb|ETM51197.1| ribonuclease HII [Phytophthora parasitica] >gi|568097739|gb|ETN12481.1| ribonuclease HII [Phytophthora parasitica INRA-310] >gi|570956345|gb|ETP21346.1| ribonuclease HII [Phytophthora parasitica CJ01A1]) HSP 1 Score: 262.692 bits (670), Expect = 6.945e-83 Identity = 145/291 (49.83%), Postives = 187/291 (64.26%), Query Frame = 0
Query: 59 PPALKTGQPVKLGIDEAGRGPVLGPMVYAAAFWKVEEDDAMIAMGFDDSKALDEKTRDGLFQRMLRTHEQVGWVIHSIPATEVAGKMLMREPTSLNKISHDSAADMLSLVLAEGVCVTEVFVDTVGDPDTYQRKLEGLFGHHTPAIAFTVAKKADSLYKTVSAASIAAKVTRDRAIRDWVWEEDFPQALSTDFGSGYPGDARCAEWLRKNSNPVFGFPSLVRFSWSTTRELMEKECVGVEWE--EEEENGGLPAGTASIEAFVKPKADGPKKARKRAKYFQQRGMETVGDF 347
P + G PV LGIDEAGRGPV+GPMVY AA+W V ++DAM A+GFDDSKAL ++R LF++M T E +GW++ I A E++ KM R+ ++LN++S D+A +++ V +G V +VFVDTVGDP YQ L H I F V KKADSL+K VSAASIAAKVTRDR I DW+WE + L TDFGSGYP D + WL + + VF FP+++RFSW T +EK V VEW ++ E P GT SI +F+ K A RA +F QR M+ V DF
Sbjct: 19 PASCLNGVPVMLGIDEAGRGPVMGPMVYGAAYWPVADNDAMSALGFDDSKALSAESRAQLFEKMQST-EGLGWIVRLISAAEISDKM-QRQTSNLNEMSRDAAIQLINEVQKKGAVVKKVFVDTVGDPRWYQTFLT---KHFNGTIEFRVEKKADSLFKVVSAASIAAKVTRDRVITDWMWESPALE-LPTDFGSGYPSDPKTKAWLATHVDQVFVFPNIIRFSWGTVEPFIEK-AVKVEWPHGKDLEKANAPTGTQSITSFLAKPVQKAKPA-TRAAFFTQRNMQDVTDF 301
BLAST of EWM24019.1 vs. NCBI_GenBank
Match: gi|699254405|ref|XP_002127465.2| (PREDICTED: ribonuclease H2 subunit A-like isoform X2 [Ciona intestinalis]) HSP 1 Score: 254.603 bits (649), Expect = 1.921e-79 Identity = 133/288 (46.18%), Postives = 176/288 (61.11%), Query Frame = 0
Query: 60 PALKTGQPVKLGIDEAGRGPVLGPMVYAAAFWKVEEDDAMIAMGFDDSKALDEKTRDGLFQRMLRTHEQVGWVIHSIPATEVAGKMLMREPTSLNKISHDSAADMLSLVLAEGVCVTEVFVDTVGDPDTYQRKLEGLFGHHTPAIAFTVAKKADSLYKTVSAASIAAKVTRDRAIRDWVWEEDFPQALSTDFGSGYPGDARCAEWLRKNSNPVFGFPSLVRFSWSTTRELMEKECVGVEWEEEEENGGLPAGTASIEAFVKPKADGPKKARKRAKYFQQRGMETVGDF 347
P L T +P LGIDEAGRGPVLGPMVYA+ F + D + +G DDSK L E+ R+ LF+ + + E +GW+IH + ++ ML R +LN ISHD+A D++ L GV VTEV+VDTVG P TY KL+ +F P+I FTV KKADS Y VSAASI AKV RD+A+++W + E+ P T +GSGYP D WLR N + +FGFPS VRFSWSTT +L+E E V V W +++E T+ KK R ++F + M+ V +F
Sbjct: 44 PKLLTSEPCCLGIDEAGRGPVLGPMVYASCFTPISCKDKLAGLGCDDSKVLKEEQRESLFETLNKASEYIGWMIHILSPAYISTSMLGRSKYNLNSISHDTAIDLIRSALKLGVEVTEVYVDTVGPPQTYAEKLKKIF----PSIKFTVEKKADSKYPVVSAASICAKVCRDKAVKEWRFREN-PDT-DTKYGSGYPADPVTKVWLRNNVDRIFGFPSFVRFSWSTTSKLLENEAVPVHWADDDEESSNEPITSYFS----------KKGNSRHQFFTENKMKRVTNF 315
BLAST of EWM24019.1 vs. NCBI_GenBank
Match: gi|813171944|ref|XP_012204727.1| (hypothetical protein SPRG_10192 [Saprolegnia parasitica CBS 223.65] >gi|641530537|gb|KDO24659.1| hypothetical protein SPRG_10192 [Saprolegnia parasitica CBS 223.65]) HSP 1 Score: 252.292 bits (643), Expect = 5.248e-79 Identity = 140/290 (48.28%), Postives = 182/290 (62.76%), Query Frame = 0
Query: 58 IPPALKTGQPVKLGIDEAGRGPVLGPMVYAAAFWKVEEDDAMIAMGFDDSKALDEKTRDGLFQRMLRTHEQVGWVIHSIPATEVAGKMLMREPTSLNKISHDSAADMLSLVLAEGVCVTEVFVDTVGDPDTYQRKLEGLFGHHTPAIAFTVAKKADSLYKTVSAASIAAKVTRDRAIRDWVWEEDFPQALSTDFGSGYPGDARCAEWLRKNSNPVFGFPSLVRFSWSTTRELMEKECVGVEWEEEEENGGLPAGTASIEAFVKPKADGPKKARKRAKYFQQRGMETVGDF 347
+P + G V LGIDEAGRGP+LGPMVY AA+W V D M AMGFDDSKAL +R LF ++ T + VG+V SI A E++ ML R +LN++S D+A +M+ V GV +T V+VDTVGDP YQ L FG AI FTV KKADSLYK VSAASIAAKVTRD + +W WE + L D+GSGYP D + +WL + VFG+P+++RFSW T +++ VEW ++E+ PAGT SI++F++ P K RKR YF Q +E +
Sbjct: 8 VPASCLDGADVMLGIDEAGRGPILGPMVYGAAYWPVSLDSTMRAMGFDDSKALSHDSRTQLFAKIKATAD-VGYVTRSISAAEISHNMLTRR-RNLNEMSRDAAIEMILAVQKAGVRLTHVYVDTVGDPGWYQSFLTKRFGG---AITFTVEKKADSLYKVVSAASIAAKVTRDAEVSEWTWEHASLK-LPIDYGSGYPSDPKTKQWLAAHVERVFGYPNILRFSWGTLESYLDR-MAAVEWPHDKEDA--PAGTQSIKSFMQT----PTKKRKRTPYFVQNHLEVATEL 284
BLAST of EWM24019.1 vs. NCBI_GenBank
Match: gi|669149220|ref|XP_008610172.1| (hypothetical protein SDRG_06186 [Saprolegnia diclina VS20] >gi|530738509|gb|EQC36751.1| hypothetical protein SDRG_06186 [Saprolegnia diclina VS20]) HSP 1 Score: 252.292 bits (643), Expect = 5.662e-79 Identity = 139/290 (47.93%), Postives = 181/290 (62.41%), Query Frame = 0
Query: 58 IPPALKTGQPVKLGIDEAGRGPVLGPMVYAAAFWKVEEDDAMIAMGFDDSKALDEKTRDGLFQRMLRTHEQVGWVIHSIPATEVAGKMLMREPTSLNKISHDSAADMLSLVLAEGVCVTEVFVDTVGDPDTYQRKLEGLFGHHTPAIAFTVAKKADSLYKTVSAASIAAKVTRDRAIRDWVWEEDFPQALSTDFGSGYPGDARCAEWLRKNSNPVFGFPSLVRFSWSTTRELMEKECVGVEWEEEEENGGLPAGTASIEAFVKPKADGPKKARKRAKYFQQRGMETVGDF 347
+P + G V LGIDEAGRGP+LGPMVY AA+W V D M AMGFDDSKAL + R LF + ++ + VG+V SIPA E+A ML R +LN++S D+A +M+ V GV +T V+VDTVGDP YQ L F +I FTV KKADSLYK VSAASIAAKVTRD + +W WE + L D+GSGYP D + +WL + VFG+P++VRFSW T +++ VEW ++E+ PAGT SI++F++ P K RKR YF +E +
Sbjct: 8 VPASCLDGAEVMLGIDEAGRGPILGPMVYGAAYWPVALDGVMRAMGFDDSKALSHEARTQLFAK-IKATDDVGYVTRSIPAAEIAHNMLTRR-RNLNEMSRDAAIEMILAVQRAGVRLTHVYVDTVGDPGWYQSFLTKRFNG---SITFTVEKKADSLYKVVSAASIAAKVTRDAEVSEWAWEHASLK-LPVDYGSGYPSDPKTKQWLAAHVERVFGYPNIVRFSWGTLESYLDR-MAAVEWPHDKEDA--PAGTQSIKSFMQT----PTKKRKRTPYFVHNHLEVASEL 284
BLAST of EWM24019.1 vs. NCBI_GenBank
Match: gi|340729627|ref|XP_003403099.1| (ribonuclease H2 subunit A [Bombus terrestris]) HSP 1 Score: 253.832 bits (647), Expect = 5.884e-79 Identity = 127/300 (42.33%), Postives = 184/300 (61.33%), Query Frame = 0
Query: 50 HGINKLWHIP--PALKTGQPVKLGIDEAGRGPVLGPMVYAAAFWKVEEDDAMIAMGFDDSKALDEKTRDGLFQRMLRTHEQVGWVIHSIPATEVAGKMLMREPTSLNKISHDSAADMLSLVLAEGVCVTEVFVDTVGDPDTYQRKLEGLFGHHTPAIAFTVAKKADSLYKTVSAASIAAKVTRDRAIRDWVWEEDFPQALSTDFGSGYPGDARCAEWLRKNSNPVFGFPSLVRFSWSTTRELMEKECVGVEWEEEEENGGLPAGTASIEAFVKPKADGPKKARKRAKYFQQRGMETVGDF 347
H IN++ H+ P + +P +LGIDEAGRGPVLGPMVY A+ + E ++ +G DSK+L E+ RD +F ++ + H+ +GW + I +A M R TSLN++S +SA ++ LV+ G +TE++VDTVG P YQ +LE +F P I TVAKKADS Y VSAASI AKV RD A++ W + E+ ++T++GSGYP D +WL +N +PVFGFP +VRFSWST +++E + + VEWE+ E+ G P + F K K KR ++F +R + +
Sbjct: 44 HSINRV-HLSDVPQICRDEPCQLGIDEAGRGPVLGPMVYGIAYAPLSEKQLLVDLGCADSKSLTEEQRDAIFNKICKQHKTIGWAVDVISPNIIANNMYRRVKTSLNEVSMNSAIELAKLVIEAGANITEIYVDTVGVPQKYQARLEQIF----PDIKITVAKKADSTYPIVSAASICAKVLRDHALKAWQFREEL---ITTEYGSGYPNDPDTKKWLSENVDPVFGFPHIVRFSWSTAEKILESKALSVEWEKVEDTGN-PGEQKISKFFAKSPVKSCKPQSKRHQFFTERCLSSTSKL 334
BLAST of EWM24019.1 vs. NCBI_GenBank
Match: gi|524870844|ref|XP_005092202.1| (PREDICTED: ribonuclease H2 subunit A-like isoform X2 [Aplysia californica]) HSP 1 Score: 252.677 bits (644), Expect = 6.609e-79 Identity = 134/281 (47.69%), Postives = 180/281 (64.06%), Query Frame = 0
Query: 64 TGQPVKLGIDEAGRGPVLGPMVYAAAFWKVEEDDAMIAMGFDDSKALDEKTRDGLFQRMLRTHEQVGWVIHSIPATEVAGKMLMREPTSLNKISHDSAADMLSLVLAEGVCVTEVFVDTVGDPDTYQRKLEGLFGHHTPAIAFTVAKKADSLYKTVSAASIAAKVTRDRAIRDWVWEEDFPQALSTDFGSGYPGDARCAEWLRKNSNPVFGFPSLVRFSWSTTRELMEKECVGVEWEEEEENGGLPAGTASIEAFVKPKADGPKKARKRAKYFQQRGMETV 344
T +P LGIDEAGRGPVLGP+VY F V E MGF DSK L E+ R+ +F +M + +GW++ + + ++ ML RE +LN +SHD A ++ L GV VTEV+VDTVGDP YQ KL+ +F P I TVAKKADSLY VSAASI AKV RD+A++ WV++EDF D+GSGYPGD + ++L+ + + VFGFP+ VRFSWST ++EK+ VGV+WE++EE G GT + F K K + K KR ++F R ++ V
Sbjct: 31 TTEPCWLGIDEAGRGPVLGPLVYGICFSPVVEKQKFGEMGFADSKTLTEEQRESIFAKMNDALDLLGWIVEVLSSAYISTSMLRREKYNLNALSHDCAIGLIQKALDRGVNVTEVYVDTVGDPGKYQAKLKEIF----PNIEITVAKKADSLYPIVSAASICAKVARDQAVKSWVFKEDFA-VEECDYGSGYPGDPKTKKFLQDSFDKVFGFPTFVRFSWSTAGNIIEKDGVGVQWEDDEEEEG-AKGTPVLSHFFKKKDE--KAELKRHRFFTHRHLKHV 303 The following BLAST results are available for this feature:
BLAST of EWM24019.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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