rna6682, rna6682 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna6682
Unique Name	rna6682
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2676
Alignment location	CM002469.1:245288..247010 -

Link to JBrowse

Properties


Property Name	Value
Product	trna (guanine-n7-)-methyltransferase
Orig transcript id	gnl\|cribi\|Naga_100040g33.1995.mrna
Orig protein id	gnl\|cribi\|Naga_100040g33.1995
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002469.1	supercontig	CM002469.1:245288..247010 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100040g33	gene6460	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM23997.1	cds6666	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna6682	rna6682-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002469.1:245288..247010-
coding sequence from alignment at CM002469.1:245288..247010-

mRNA sequence

>rna6682 ID=rna6682|Name=rna6682|organism=Nannochloropsis gaditana|type=mRNA|length=2676bp
AAACACGCCTTTCTGGAATGTTGATCCTGCCTCTTCTAACGCCACGATCA
TCTAGCAGGGCCAGTACTTATGGTACTTGTCAATGTCAACGTTCATGCTG
GCAACGAGAGAAGGTTGTCGTCTGGGCCCTTCACGAGGATTCCTGGCAAC
AAGCATCATGCCGAGAGGTCTCCTCGCTCTTCCCTACAGTACTCGCCCAC
ACTAAATTTCAATAGAGGGTCATCGACAAGACGTGTACGGGAAGGTTTAC
TGGATGTTGATTTTGTTCGTAGCGCCAACGCTTTTAATACAGAGCCTCCG
AGGTTTTCCTCCGTTCTGTGGCGGGGGGCCTTCAGAATTCTTTTCTTTCC
TTTCGCCTTTTCATGGTGGAAGGGACGTCGTCTGCCTTTCGTCACATACG
TCGCAGGCACTCTACTGTATTTTGCCCAAGGCCTGGCATCGTTTCTTGTA
CTCTGGGATGGTGGTTCAATATTAATGCGGTGCGATGGCTGGAGAAGGAC
GTCGGAGACTGTCCGGCAGCAGCTACAGGCAGAGGCGGTCATTCCTGTAG
TCTTGTGGCTATTCTCCGCGTTGTCATACGGCCATTTGTGCGCAGCATCG
CAGTCTGAAGGTTTGAAGACGAAAAAACGGCGACTCACATATGCCCCTCC
AAAGACTGCGGGCATAGCGAAAGGAGAGGCAGAGGACGAGGAGGAGGACG
AGGAGGAGGACAAAGGGAAGGAAAACGGCTTTGTAAGGCATCGCAAGAAG
CGTGTTCCTGAGGTTTATAATGGTGACAAGATGGCTCATTTGAATGTACA
GGCGGATGGCATTAATGAGGGCAAACATACGGGGAGGGAGGAGGAGGAGG
AGGGGGAGGAGGAGGAGGGGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAG
GAGGAGGAAGAAGAAGATCTTGACGATGACGAGGAAGAGCACCACAAGGA
AGAGATGTACAGCGAGGAGCTCCGAGAGCAGGAAGCGCAGCATGTTATCA
TGAAGAGTAACAGCAGCTGTAGCCTGCCCCGTCCCGTCGCGCGCCTGGTT
CCCCGAGCATCCCCCCCCCCACCTCGTCCCCGCCATCCTTGCCCGCACAC
CCGCTCCCTTCCTTATCCCCTACCCTCACCGGAGTCCTCTCGCCAGCCCG
CCCTGCCTGCAAACGCCCCCCATCTCCCTTCAACGTCACGGACTCATGCC
GGGAGGAGGAAGAAGAGGAAGGCATGCTCGGCCTGGGAAGGAACCCGCTG
GGGGGCGGGGCCTCCGTCCGAGTCACGCTCTTGAATCAGAATGGACAGCG
GTACAAGGTGGGGATGACGCTCAGTCAGATGCGGCGCCGTCTGGTAGACC
GCGTCGCTCTCACGGAGCAGGACTGGATGTACAGGACCGGGGTTCCCCTG
GCCGGGGCGTCCTTGGCGGCCGCCGCCCCCCTCTTGCATCGGCTGTGGAT
GGCGTGGGAGGAAGGGGGGCAGACAAGGGCGGCTCCAGGCGTCAGTGGCC
ATGTCCCTTTAAAAAGCGCCCGGCTTTGGTTTGGCCTGCTCCCTTTCCTC
CTCGTTCAGGAGGCGGAGGACGCTCTGCATGCGGGGGGGCAGTACGACCC
GGCCAGGGAGGAAGGGACCAGCTGCCGCGACGAAATCAAAGGGGCCTGTC
GGTCGGCCTTGGGCGCCGTCCGCCTCGTGAGCTTCCTCGCGGTCTACCTG
CTGGCCTGGAGCATCTTCCGGCAAGTCCTCTCGGCCACGGAGCTGGTCTT
CAAGAAACGCTACAAGTACAGCAAACTCTTCTCCATGCTTACCTCCTTCT
CCAAAGCCAGCCGCTACGCCATCCCGCACTTCACGCTCAAGAACCCTCTC
AACATCAAGATGTGGTTGGCCCTCCGCGGGGGCCGGGCCTGGCTCCGCCG
CTTCGAGGCCCAACGCGTGGCCGACACGGTCGTCTCCTCCACCTTCCGGA
CCGTCGCCTTCTTCCTGGCCGTCCTGTGTGTGGAGGTCTTCCTCTGCAAG
GACGTGCGTCCCTTTCTCACGGAGTTGTGGCACTGGGAGCTGGTAATATG
GGGCGGCATCTCTTCCATCTTCCTCCTCCGCTTTTTCTCCTTGGGGACGC
GGACGAACGAGAAGTTCGGCGACACCACCATCCTCCTGACCGAGCAACTG
AACGTCCAACTCCGCATTTTTGAGAACTGCAGCCGAAGCAACGATCGTGC
AAAGCTCGGGAAGCTTCAGATATCATCCAACGTCCTGAAGCTGGCGGTGA
AACTCTTGCGGGAACTGGACTCGCCCAATCGCGTCAGCGGGCTAAGCATG
TCTCCTACCCTCGTGCGAGTCACGCGCGTTATCCTTCTTTCCGCCTTGAG
TGCCTTGGTCAGCGACGTCTTCGGCTTCAAGCTAAAGGTGAACCAATTGT
TGAAGTGAGAGGCACGTTGGAAGGTCGGGTCCACGAGGGACTCTACCTTC
GAACGTGCATTCGGACGGGGCGCAACCTTTTCCAGGGCCCGTCCTGACTG
CGGGCGTGCAGGTCAGTCGGGAAAAAGCAATATCTTGGGGGGAAATGAGC
CCGGTAGAGTAAGTGTAAAATAACAACGAGCTTTTCTGATCCGATCAAAG
GGACCGGGTCACCTGATACAAGCAATTCCGGGTGCCTCATGGCCCTTGCA
TTACTTTGGTATTCTTTGTGCTTTGA

protein sequence of rna6682

>rna6682-protein ID=rna6682-protein|Name=rna6682|organism=Nannochloropsis gaditana|type=polypeptide|length=489bp
MRDKLLVAAKCSGGAGILLCAYAGEDVFLIDTKQPGNVVALPVPDLSAAS
VDGTESNADGLGQVEALALTGNGRRAAALYRHKVLALWDTSDSASPVLLS
HRLLPKKAFALLFARLDSPSGDQDLGPGTGHQEDVVLVNDKVGDVRMYRA
TAEMLPKTSAFLLGHTASVGTCLDLSPDGARLATGDRDEKVRISHFPCTV
VIETYLLGHERFVSSVNFVENGAKVLTGSGDQTLALWDAHTGCEVVRESL
PPLEGELVAEGEQLGPENGERGRNSSKSPSTIVPCAVAVTSDSALAAVTL
LGQSKLLVYALPALSLIQTLDLPSVPVGAAFMDNPEEAEGEVRRVLYVTV
GAPEYLLAYRVTKDGEGGAWRLEAAEEGTGVLVSVRLFGLKMGLKASLTV
DEGDEDFLGGMTKENLTVRCDWNSRQRREEHAERARRKRQDKRHRERDGA
VAEEGKEGEADLPAKAKPRTGTQSGEKEGREEDTLAGQA

mRNA from alignment at CM002469.1:245288..247010-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna6682 ID=rna6682|Name=rna6682|organism=Nannochloropsis gaditana|type=mRNA|length=1723bp|location=Sequence derived from alignment at CM002469.1:245288..247010- (Nannochloropsis gaditana)
AGTTCACATTTCCGTGGAGAAAGCGTACGCGTGCTGTCGCCTTAGCGCGC
TCATCGCTTACAAGTAGCAACCATAGGCTCGTGTATGCAGGGGGGCCGCT
TTTGCACGGCACACTTCTTTATGTGTGGCGCGCGATTTGAACTCACAAAA
ATATATACGAATGCGCTTTTTGACAACTCAGTCGCGTGGTAACATTTCCC
CAGGTCCATGCGCGACAAGCTTTTGGTGGCCGCAAAGTGTAGTGGCGGCG
CAGGGATTCTTTTATGTGCATACGCCGGGGAAGATGTGTTTTTGATTGAC
ACCAAGCAACCGGGAAATGTCGTGGCTCTTCCCGTCCCTGATCTTTCAGC
GGCTTCCGTGGACGGCACCGAGTCCAATGCTGATGGCTTGGGGCAAGTGG
AGGCTCTGGCTTTGACGGGGAATGGGAGGCGAGCGGCAGCACTGTACAGG
CACAAAGTACTGGCGCTGTGGGACACAAGCGATAGCGCCAGCCCTGTCCT
GCTCTCCCACCGTTTGCTTCCCAAAAAAGCCTTTGCGCTCCTATTTGCTA
GACTTGATTCGCCATCTGGCGACCAAGATCTCGGCCCGGGGACGGGGCAC
CAAGAGGATGTCGTGCTCGTCAACGATAAAGTCGGGGACGTTCGGATGTA
CCGGGCCACAGCCGAAATGCTACCTAAGACCTCGGCATTCCTGCTTGGCC
ATACAGCGTCTGTGGGCACCTGCTTGGACCTGTCCCCTGACGGGGCACGC
CTTGCTACCGGGGATCGGGACGAGAAAGTCCGCATCTCTCATTTCCCCTG
CACCGTCGTCATCGAGACGTACCTACTGGGCCATGAGAGATTCGTCAGCT
CGGTCAACTTTGTAGAAAATGGCGCGAAGGTGTTGACAGGCAGCGGGGAC
CAAACCCTTGCCTTGTGGGACGCGCACACAGGCTGCGAGGTTGTAAGGGA
AAGTCTCCCCCCCCTCGAGGGGGAGCTCGTCGCGGAGGGCGAGCAGCTTG
GGCCGGAGAACGGGGAAAGAGGACGCAACTCGAGCAAGAGCCCAAGTACT
ATCGTCCCCTGTGCGGTGGCTGTGACTTCAGACAGCGCCCTAGCTGCCGT
CACGTTGCTAGGCCAGAGCAAGCTTTTGGTGTACGCCCTGCCCGCTCTGA
GCTTGATCCAGACACTGGACTTGCCGTCTGTACCTGTGGGCGCCGCATTT
ATGGATAACCCGGAAGAAGCGGAAGGGGAAGTCAGGAGAGTGCTGTATGT
GACTGTGGGCGCGCCGGAATACCTCTTGGCGTACAGGGTGACCAAAGACG
GGGAGGGGGGGGCGTGGAGGCTGGAGGCGGCTGAGGAAGGGACAGGGGTG
CTGGTCAGTGTGAGACTCTTTGGGTTAAAAATGGGCTTGAAGGCCTCTTT
GACCGTGGACGAGGGAGACGAGGATTTCCTGGGCGGTATGACCAAGGAGA
ACTTGACCGTGCGGTGTGACTGGAACTCCCGGCAACGCAGGGAAGAGCAC
GCGGAGAGGGCTCGTCGGAAACGCCAGGACAAGAGACATCGGGAGAGGGA
CGGGGCGGTCGCGGAGGAGGGGAAAGAGGGGGAAGCGGACCTGCCAGCCA
AGGCGAAGCCTCGGACAGGGACACAATCTGGGGAAAAGGAGGGGCGGGAG
GAGGATACGCTGGCAGGGCAGGCATGATCAAAGCACAAAGAATACCAAAG
TAATGCAAGGGCCATGAGGCACC

Coding sequence (CDS) from alignment at CM002469.1:245288..247010-

>rna6682 ID=rna6682|Name=rna6682|organism=Nannochloropsis gaditana|type=CDS|length=1470bp|location=Sequence derived from alignment at CM002469.1:245288..247010- (Nannochloropsis gaditana)
ATGCGCGACAAGCTTTTGGTGGCCGCAAAGTGTAGTGGCGGCGCAGGGAT
TCTTTTATGTGCATACGCCGGGGAAGATGTGTTTTTGATTGACACCAAGC
AACCGGGAAATGTCGTGGCTCTTCCCGTCCCTGATCTTTCAGCGGCTTCC
GTGGACGGCACCGAGTCCAATGCTGATGGCTTGGGGCAAGTGGAGGCTCT
GGCTTTGACGGGGAATGGGAGGCGAGCGGCAGCACTGTACAGGCACAAAG
TACTGGCGCTGTGGGACACAAGCGATAGCGCCAGCCCTGTCCTGCTCTCC
CACCGTTTGCTTCCCAAAAAAGCCTTTGCGCTCCTATTTGCTAGACTTGA
TTCGCCATCTGGCGACCAAGATCTCGGCCCGGGGACGGGGCACCAAGAGG
ATGTCGTGCTCGTCAACGATAAAGTCGGGGACGTTCGGATGTACCGGGCC
ACAGCCGAAATGCTACCTAAGACCTCGGCATTCCTGCTTGGCCATACAGC
GTCTGTGGGCACCTGCTTGGACCTGTCCCCTGACGGGGCACGCCTTGCTA
CCGGGGATCGGGACGAGAAAGTCCGCATCTCTCATTTCCCCTGCACCGTC
GTCATCGAGACGTACCTACTGGGCCATGAGAGATTCGTCAGCTCGGTCAA
CTTTGTAGAAAATGGCGCGAAGGTGTTGACAGGCAGCGGGGACCAAACCC
TTGCCTTGTGGGACGCGCACACAGGCTGCGAGGTTGTAAGGGAAAGTCTC
CCCCCCCTCGAGGGGGAGCTCGTCGCGGAGGGCGAGCAGCTTGGGCCGGA
GAACGGGGAAAGAGGACGCAACTCGAGCAAGAGCCCAAGTACTATCGTCC
CCTGTGCGGTGGCTGTGACTTCAGACAGCGCCCTAGCTGCCGTCACGTTG
CTAGGCCAGAGCAAGCTTTTGGTGTACGCCCTGCCCGCTCTGAGCTTGAT
CCAGACACTGGACTTGCCGTCTGTACCTGTGGGCGCCGCATTTATGGATA
ACCCGGAAGAAGCGGAAGGGGAAGTCAGGAGAGTGCTGTATGTGACTGTG
GGCGCGCCGGAATACCTCTTGGCGTACAGGGTGACCAAAGACGGGGAGGG
GGGGGCGTGGAGGCTGGAGGCGGCTGAGGAAGGGACAGGGGTGCTGGTCA
GTGTGAGACTCTTTGGGTTAAAAATGGGCTTGAAGGCCTCTTTGACCGTG
GACGAGGGAGACGAGGATTTCCTGGGCGGTATGACCAAGGAGAACTTGAC
CGTGCGGTGTGACTGGAACTCCCGGCAACGCAGGGAAGAGCACGCGGAGA
GGGCTCGTCGGAAACGCCAGGACAAGAGACATCGGGAGAGGGACGGGGCG
GTCGCGGAGGAGGGGAAAGAGGGGGAAGCGGACCTGCCAGCCAAGGCGAA
GCCTCGGACAGGGACACAATCTGGGGAAAAGGAGGGGCGGGAGGAGGATA
CGCTGGCAGGGCAGGCATGA

Synonyms

Publications