EWM23997.1, cds6666 (CDS) Nannochloropsis gaditana

Overview
NameEWM23997.1
Unique Namecds6666
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002469.1:245334..246803 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM23997.1
Producttrna (guanine-n7-)-methyltransferase
Orig transcript idgnl|cribi|Naga_100040g33.1995.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002469.1supercontigCM002469.1:245334..246803 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006139nucleobase-containing compound metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0016740transferase activity
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR011044Quino_amine_DH_bsu
IPR017986WD40_repeat_dom
IPR019775WD40_repeat_CS
IPR015943WD40/YVTN_repeat-like_dom
IPR001680WD40_repeat
Homology
BLAST of EWM23997.1 vs. NCBI_GenBank
Match: gi|585105284|gb|EWM23997.1| (trna (guanine-n7-)-methyltransferase [Nannochloropsis gaditana])

HSP 1 Score: 985.326 bits (2546), Expect = 0.000e+0
Identity = 489/489 (100.00%), Postives = 489/489 (100.00%), Query Frame = 0
Query:    1 MRDKLLVAAKCSGGAGILLCAYAGEDVFLIDTKQPGNVVALPVPDLSAASVDGTESNADGLGQVEALALTGNGRRAAALYRHKVLALWDTSDSASPVLLSHRLLPKKAFALLFARLDSPSGDQDLGPGTGHQEDVVLVNDKVGDVRMYRATAEMLPKTSAFLLGHTASVGTCLDLSPDGARLATGDRDEKVRISHFPCTVVIETYLLGHERFVSSVNFVENGAKVLTGSGDQTLALWDAHTGCEVVRESLPPLEGELVAEGEQLGPENGERGRNSSKSPSTIVPCAVAVTSDSALAAVTLLGQSKLLVYALPALSLIQTLDLPSVPVGAAFMDNPEEAEGEVRRVLYVTVGAPEYLLAYRVTKDGEGGAWRLEAAEEGTGVLVSVRLFGLKMGLKASLTVDEGDEDFLGGMTKENLTVRCDWNSRQRREEHAERARRKRQDKRHRERDGAVAEEGKEGEADLPAKAKPRTGTQSGEKEGREEDTLAGQA 489
            MRDKLLVAAKCSGGAGILLCAYAGEDVFLIDTKQPGNVVALPVPDLSAASVDGTESNADGLGQVEALALTGNGRRAAALYRHKVLALWDTSDSASPVLLSHRLLPKKAFALLFARLDSPSGDQDLGPGTGHQEDVVLVNDKVGDVRMYRATAEMLPKTSAFLLGHTASVGTCLDLSPDGARLATGDRDEKVRISHFPCTVVIETYLLGHERFVSSVNFVENGAKVLTGSGDQTLALWDAHTGCEVVRESLPPLEGELVAEGEQLGPENGERGRNSSKSPSTIVPCAVAVTSDSALAAVTLLGQSKLLVYALPALSLIQTLDLPSVPVGAAFMDNPEEAEGEVRRVLYVTVGAPEYLLAYRVTKDGEGGAWRLEAAEEGTGVLVSVRLFGLKMGLKASLTVDEGDEDFLGGMTKENLTVRCDWNSRQRREEHAERARRKRQDKRHRERDGAVAEEGKEGEADLPAKAKPRTGTQSGEKEGREEDTLAGQA
Sbjct:    1 MRDKLLVAAKCSGGAGILLCAYAGEDVFLIDTKQPGNVVALPVPDLSAASVDGTESNADGLGQVEALALTGNGRRAAALYRHKVLALWDTSDSASPVLLSHRLLPKKAFALLFARLDSPSGDQDLGPGTGHQEDVVLVNDKVGDVRMYRATAEMLPKTSAFLLGHTASVGTCLDLSPDGARLATGDRDEKVRISHFPCTVVIETYLLGHERFVSSVNFVENGAKVLTGSGDQTLALWDAHTGCEVVRESLPPLEGELVAEGEQLGPENGERGRNSSKSPSTIVPCAVAVTSDSALAAVTLLGQSKLLVYALPALSLIQTLDLPSVPVGAAFMDNPEEAEGEVRRVLYVTVGAPEYLLAYRVTKDGEGGAWRLEAAEEGTGVLVSVRLFGLKMGLKASLTVDEGDEDFLGGMTKENLTVRCDWNSRQRREEHAERARRKRQDKRHRERDGAVAEEGKEGEADLPAKAKPRTGTQSGEKEGREEDTLAGQA 489          
BLAST of EWM23997.1 vs. NCBI_GenBank
Match: gi|299471322|emb|CBN79278.1| (tRNA (guanine-n(7)-)-methyltransferase complex subunit, putative [Ectocarpus siliculosus])

HSP 1 Score: 99.3673 bits (246), Expect = 1.022e-18
Identity = 98/314 (31.21%), Postives = 142/314 (45.22%), Query Frame = 0
Query:   98 LLSHRLLPKKAFALLFARLDSPSGDQDLGPGTGHQ--EDVVLVNDKVGDVRMYRATAEMLPKTSA---FLLGHTASVGTCLDLSPDGARLATGDRDEKVRISHFPCTVVIETYLLGHERFVSSVNFV--ENGAKVLTGSGDQTLALWDAHTGCEV----VRESLPPL-EGELVAEG-------EQLGP--------------------ENGERGRNS------------SKSP--------STIVPCAVAVTSDSALAAVTLLGQSKLLVYALP-------------------ALSLIQTLDLPSVPVGAAFMD 333
            +L  R LPKK  ++LFA + +P  D   G     +  E+VV+V+DK GD     A A  LP  S+    LLGHTA   T +     G  LAT DR E +R+S FP T ++ TYLLGH+ FVS++  V  E G  +L+G GD  + LW+A  G E+    VR++   L +G+  +EG       E+ G                     +NG+ G +S            S++P           VP +V+ + D    AV + G   LL+  +                    +L+    L LPSVP+ A F+D
Sbjct:   56 VLGKRELPKKPTSVLFAPVVAPRAD---GAAATREKTEEVVVVSDKCGD-----AYAAPLPDPSSALKHLLGHTAMTITAMVTLKRGQLLATADRAEHIRVSQFPRTTIVHTYLLGHQDFVSALAAVPGEGGTMLLSGGGDGRVGLWEAEAGRELAMISVRQACQDLADGDNASEGVATMDLEEEEGSKETAAAADGGGGGSGDASSCKNGDSGADSRGEGEAGSGGVTSETPKGGGGGGGGGGVPLSVSCSEDGRTVAVVVSGLEGLLLLNISHGGGGSEGAEGGAGAGASFSLTPRARLQLPSVPIQAGFLD 361          
BLAST of EWM23997.1 vs. NCBI_GenBank
Match: gi|1191040415|ref|XP_020897584.1| (tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit wdr4-like [Exaiptasia pallida] >gi|999976878|gb|KXJ16052.1| tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit WDR4 [Exaiptasia pallida])

HSP 1 Score: 97.0561 bits (240), Expect = 3.111e-18
Identity = 65/219 (29.68%), Postives = 111/219 (50.68%), Query Frame = 0
Query:   33 KQPGNVVALPVP-DLSAASVDGTESNADGLGQVEALALTGNGRRAAALYRHKVLALWDTSDSASPVLLSHRLLPKKAFALLFARLDSPSGDQDLGPGTGHQEDVVLVNDKVGDVRMYRATAEMLPKTSAFLLGHTASVGTCLDLSPDGARLATGDRDEKVRISHFPCTVVIETYLLGHERFVSSVNFVENGAKVLTGSGDQTLALWDAHTGCEVVRESL 250
            K   N+  + +P D+    +D  + +   LG     + + +GR       +K+L+LW T    +   LS RL+ KKA A++F                 + ++ V+V DK GDV  Y+ +A+       F+LGH + +   + L+ D   + T +RDEK+R+S+FP +  I++Y LGH  FVSS+  +     +++GSGD  + LWD   G ++  + L
Sbjct:   31 KFSCNLSDIKMPQDVKKQIIDDNKQDM-TLGHGNISSFSPSGRLYGFCTANKILSLWRTD---TWECLSTRLIEKKATAVVFT----------------NNDEYVIVADKAGDV--YKFSAKDSDSKGDFVLGHISMIMDMV-LTKDNKYIITAERDEKIRVSYFPNSYSIQSYCLGHSDFVSSIKLLSKDDLLVSGSGDSMVILWDYKDGKKIHTKQL 226          
BLAST of EWM23997.1 vs. NCBI_GenBank
Match: gi|443731148|gb|ELU16385.1| (hypothetical protein CAPTEDRAFT_227793 [Capitella teleta])

HSP 1 Score: 91.6633 bits (226), Expect = 1.566e-16
Identity = 81/282 (28.72%), Postives = 123/282 (43.62%), Query Frame = 0
Query:   57 NADGLGQVEALALTGNGRRAAALYRHKVLALWDTSDSASPVLLSHRLLPKKAFALLFARLDSPSGDQDLGPGTGHQEDVVLVNDKVGDVRMYRATAEMLPKTSAFLLGHTASVGTCLD--LSPDGARLATGDRDEKVRISHFPCTVVIETYLLGHERFVSSVNFVENGAKVLTGSGDQTLALWDAHTGCEVVRESLPPLEGELVAEGEQLGPENGERGRNSSKSPSTIVPCAVAVTSDSALAAVTLLGQSKLLVYAL-----PALSLIQTLDLPSVPVGAAF 331
            N +G  ++ A A +  GR  AA    K + +W   ++     L  R L ++  ++ F+R                 E  V+V DK GDV  Y  T + +      LLGH + +   LD  L  D   L T DRDEK+R+S FP +  I  + LGH+ FVS   +++    +L+GSGD TL LWD  + C+        L+  +    +Q                  +   ++AV S+  +      G+S L+VYA+     P L  +QTL L  V     F
Sbjct:   32 NEEGRDRILAAAFSHTGRFFAACDDFKQMVIW-AIEAGQWKTLGTRSLHRRCTSVSFSR----------------DESSVVVADKSGDVFQY--TVKTVEGDGRLLLGHVSMI---LDACLCADDQLLVTADRDEKLRVSRFPNSYNIHGFCLGHKEFVSCSRWLDEEKLLLSGSGDGTLKLWDLES-CD--------LKSSVDCRSQQ---------------TDDLEVSSIAVCSEYKIVVAGFNGKSLLMVYAIQSTPNPRLEFVQTLTLSGVLWDMTF 267          
BLAST of EWM23997.1 vs. NCBI_GenBank
Match: gi|1021809289|gb|KZP01540.1| (hypothetical protein CALVIDRAFT_9711 [Calocera viscosa TUFC12733])

HSP 1 Score: 91.2781 bits (225), Expect = 4.511e-16
Identity = 57/151 (37.75%), Postives = 81/151 (53.64%), Query Frame = 0
Query:   98 LLSHRLLPKKAFALLFARLDSPSGDQDLGPGTGHQEDVVLVNDKVGDVRMY---------RATAEMLPKTSAFLLGHTASVGTCLDLSPDGARLATGDRDEKVRISHFPCTVVIETYLLGHERFVSSVNFVENGAKVL-TGSGDQTLALWD 238
            LLS R LPK+A ++ FA  DS +               ++V DK GDV  Y          +T+E   +    LLGH  S+ T L LSPDG  + TGDRDE +R+S +P + VIE +L GH R+V++++      + L +G G+  L LWD
Sbjct:   75 LLSTRELPKRATSITFA--DSAT---------------LIVADKFGDVFRYPLHPPAPAEASTSEKPTQEGELLLGHV-SIITALQLSPDGKHIITGDRDEHIRVSRYPASYVIERFLFGHRRYVTALHIPPFAPETLISGGGEPQLFLWD 207          
BLAST of EWM23997.1 vs. NCBI_GenBank
Match: gi|1045447238|gb|OCF40988.1| (hypothetical protein I317_05187 [Kwoniella heveanensis CBS 569])

HSP 1 Score: 91.2781 bits (225), Expect = 6.285e-16
Identity = 66/208 (31.73%), Postives = 103/208 (49.52%), Query Frame = 0
Query:   64 VEALALTGNGRRAAALYRHKVLALWDTSDSASPVLLSHRLLPKKAFALLFARLDSPSGDQDLGPGTGHQEDVVLVNDKVGDVRMYRA-TAEMLPKTS-----------------AFLLGHTASVGTCLDLSPDGARLATGDRDEKVRISHFPCTVVIETYLLGHERFVSSVNFVE-NGAKVLTGSGDQTLALWDAHTGCEVVRESLPP 252
            +  +A+T +G+ AA++   K L +WD  D A   L S R + KK   + F            GP     +  ++V DKVGD  +Y        P TS                  +LLGHT+ + + + ++ DG  + T DRDE +RIS FP + V+E YL GHE FVS+++    + + +++G GD +L +WD  TG  V +  + P
Sbjct:   59 IRLVAVTEDGKIAASIGDDKSLKVWDIKDDAI-TLRSTRAMVKKGSHITF------------GP-----DQSIVVCDKVGDAYLYPLDPVPADPSTSRPPMYTLVSDPTKNPDCTYLLGHTSILNSHV-VTSDGKSIITADRDEHIRISRFPKSYVVEKYLFGHEGFVSALHIPSTHPSTLISGGGDASLRIWDHTTGNLVSKVDIYP 247          
BLAST of EWM23997.1 vs. NCBI_GenBank
Match: gi|1045441646|gb|OCF35779.1| (hypothetical protein I316_02271 [Kwoniella heveanensis BCC8398])

HSP 1 Score: 91.2781 bits (225), Expect = 6.399e-16
Identity = 66/208 (31.73%), Postives = 103/208 (49.52%), Query Frame = 0
Query:   64 VEALALTGNGRRAAALYRHKVLALWDTSDSASPVLLSHRLLPKKAFALLFARLDSPSGDQDLGPGTGHQEDVVLVNDKVGDVRMYRA-TAEMLPKTS-----------------AFLLGHTASVGTCLDLSPDGARLATGDRDEKVRISHFPCTVVIETYLLGHERFVSSVNFVE-NGAKVLTGSGDQTLALWDAHTGCEVVRESLPP 252
            +  +A+T +G+ AA++   K L +WD  D A   L S R + KK   + F            GP     +  ++V DKVGD  +Y        P TS                  +LLGHT+ + + + ++ DG  + T DRDE +RIS FP + V+E YL GHE FVS+++    + + +++G GD +L +WD  TG  V +  + P
Sbjct:   59 IRLVAVTEDGKIAASIGDDKSLKVWDIKDDAI-TLRSTRAMVKKGSHITF------------GP-----DQSIVVCDKVGDAYLYPLDPVPADPSTSRPPMYTLVSDPTKNPDCTYLLGHTSILNSHV-VTSDGKSIITADRDEHIRISRFPKSYVVEKYLFGHEGFVSALHIPSTHPSTLISGGGDASLRIWDHTTGNLVSKVDIYP 247          
BLAST of EWM23997.1 vs. NCBI_GenBank
Match: gi|134114021|ref|XP_774258.1| (hypothetical protein CNBG2390 [Cryptococcus neoformans var. neoformans B-3501A] >gi|338819705|sp|P0CS53.1|TRM82_CRYNB RecName: Full=tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit TRM82; AltName: Full=Transfer RNA methyltransferase 82 >gi|50256893|gb|EAL19611.1| hypothetical protein CNBG2390 [Cryptococcus neoformans var. neoformans B-3501A])

HSP 1 Score: 90.8929 bits (224), Expect = 8.109e-16
Identity = 67/205 (32.68%), Postives = 99/205 (48.29%), Query Frame = 0
Query:   58 ADGLG-QVEALALTGNGRRAAALYRHKVLALWDTSDSASPVLLSHRLLPKKAFALLFARLDSPSGDQDLGPGTGHQEDVVLVNDKVGDVRMYR-------ATAEMLPKTS-----------AFLLGHTASVGTCLDLSPDGARLATGDRDEKVRISHFPCTVVIETYLLGHERFVSSVNF-VENGAKVLTGSGDQTLALWDAHTG 242
            ADG G  +  LA+  +G  AA L   K LA+WD      P L   R + KK   L FA+  S                 +++ DKVGDV  Y         +AE  P  +            +LLGH + +   + ++PDG R+ T DRDE +R+S +P   VI+ YL GH+ FVS+++    N + +L+  GD +L +W+  TG
Sbjct:   40 ADGTGGLIRLLAVREDGEVAATLGEDKQLAVWDIQHD-RPQLRHTRTVVKKGSCLSFAKDGS-----------------IILTDKVGDVYSYPLDPVPIDPSAERPPMYTLVADPSQNPDATYLLGHVSMLNAHV-MTPDGRRIITADRDEHIRVSRYPKAYVIDKYLFGHDGFVSALHIPPSNPSLLLSAGGDPSLLIWNPSTG 225          
BLAST of EWM23997.1 vs. NCBI_GenBank
Match: gi|585716687|ref|XP_006825565.1| (PREDICTED: tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit wdr4-like [Saccoglossus kowalevskii])

HSP 1 Score: 89.3521 bits (220), Expect = 1.067e-15
Identity = 65/192 (33.85%), Postives = 95/192 (49.48%), Query Frame = 0
Query:   52 DGTESNADGLGQVEALALTGNGRRAAALYRHKVLALWDTSDSASPVLLSHRLLPKKAFALLFARLDSPSGDQDLGPGTGHQEDVVLVNDKVGDVRMYRATAEMLPKTSAFLLGHTASVGTCLDLSPDGARLATGDRDEKVRISHFPCTVVIETYLLGHERFVSSVNFVE-NGAKVLTGSGDQTLALWDAHTG 242
            D T+S     G++ A   + NG   A     K L +W+TS   +   LS R + K+  AL F+                H ED ++V+DK GDV  Y+ +     K    +LGH + V   + LS D   + T DRDEK+R+SHFP    I +Y LGH  FVS +  +  N   +L+G+GD T+ +W+   G
Sbjct:   43 DSTDS-----GRILASGFSENGEYFAICDNQKQLTVWNTSTEWTK--LSSRPVVKRCTALAFS----------------HNEDNIIVSDKAGDV--YKFSILDPDKPGELILGHLSMVLDVI-LSEDDRFVVTADRDEKIRVSHFPNGYNIHSYCLGHTDFVSRLKILSGNSYILLSGAGDGTIRVWNYLEG 208          
BLAST of EWM23997.1 vs. NCBI_GenBank
Match: gi|1062684538|ref|XP_017963634.1| (PREDICTED: tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit wuho [Drosophila navojoa])

HSP 1 Score: 89.3521 bits (220), Expect = 1.078e-15
Identity = 69/189 (36.51%), Postives = 97/189 (51.32%), Query Frame = 0
Query:   65 EALALTGNGRRAAALYRHKVLALWDTSDSASPVLLSHRLLPKKAFALLFARLDSPSGDQDLGPGTGHQEDVVLVNDKVGDVRMYRAT-AEMLPKTSAFLLGHTASVGTCLDLSPDGARLATGDRDEKVRISHFPCTVVIETYLLGHERFVSSVNFVE-NGAKVLTGSGDQTLALWDAHTGCEVVRESLP 251
            + +ALT  G++A  LY+         S     +LLS R L + + AL FA  DS S               VLV DK GD   Y     E  PK    LLGH + V   L  +PD   + T DRD+K+R++++P T  I +Y LGH+ FVS +  +  N   +++ SGD+TL LW   TG EV+++ LP
Sbjct:   76 QLIALTTVGQKALLLYK---------SRPEHAMLLSVRALSRASSALAFAA-DSSS---------------VLVTDKTGDCYQYDCVEVEAPPK---LLLGHLSIVYD-LVWTPDLKHIITCDRDDKIRVTNYPATHDIHSYCLGHKEFVSGLALLPGNDDLLISISGDKTLRLWKYLTGKEVLQQQLP 235          
The following BLAST results are available for this feature:
BLAST of EWM23997.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585105284|gb|EWM23997.1|0.000e+0100.00trna (guanine-n7-)-methyltransferase [Nannochlorop... [more]
gi|299471322|emb|CBN79278.1|1.022e-1831.21tRNA (guanine-n(7)-)-methyltransferase complex sub... [more]
gi|1191040415|ref|XP_020897584.1|3.111e-1829.68tRNA (guanine-N(7)-)-methyltransferase non-catalyt... [more]
gi|443731148|gb|ELU16385.1|1.566e-1628.72hypothetical protein CAPTEDRAFT_227793 [Capitella ... [more]
gi|1021809289|gb|KZP01540.1|4.511e-1637.75hypothetical protein CALVIDRAFT_9711 [Calocera vis... [more]
gi|1045447238|gb|OCF40988.1|6.285e-1631.73hypothetical protein I317_05187 [Kwoniella heveane... [more]
gi|1045441646|gb|OCF35779.1|6.399e-1631.73hypothetical protein I316_02271 [Kwoniella heveane... [more]
gi|134114021|ref|XP_774258.1|8.109e-1632.68hypothetical protein CNBG2390 [Cryptococcus neofor... [more]
gi|585716687|ref|XP_006825565.1|1.067e-1533.85PREDICTED: tRNA (guanine-N(7)-)-methyltransferase ... [more]
gi|1062684538|ref|XP_017963634.1|1.078e-1536.51PREDICTED: tRNA (guanine-N(7)-)-methyltransferase ... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6682rna6682Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications