rna6681, rna6681 (mRNA) Nannochloropsis gaditana

Overview
Namerna6681
Unique Namerna6681
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length693
Alignment locationCM002469.1:242658..245333 +

Link to JBrowse

Properties
Property NameValue
ProductTranscription factor homeodomain, male germ-cell
Orig transcript idgnl|cribi|Naga_100040g32.2022.mrna
Orig protein idgnl|cribi|Naga_100040g32.2022
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002469.1supercontigCM002469.1:242658..245333 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100040g32gene6459Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna6681rna6681-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM24024.1cds6665Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna6681 ID=rna6681|Name=rna6681|organism=Nannochloropsis gaditana|type=mRNA|length=693bp
ATGGCCCCTCGCACCAACTTTCCAGTCAAAATGAAGGTCTTCTTCTCCCT
CGCTGTACTTATCGTCTGCATGCAGGCTGTGATGGGGTTCATGCCCACAG
CACCCCTCCGCACCCGCCAGGTCATGAAGATGTCGGCTACCGACAACAAG
GTCACCGAGGTGGTCAAGGCCGGCAAGACCGCCCTTGCTGGCCTCACGCC
CCTCATTCTGTCTTCCCCCGTCTTCGCCACGGAGGGAACGGGCGAGGCCC
TGGGCGTTGATGACCCCCGCATCCTGCCCCTGGTCGCCTCCATCGGCGCC
GCGTTCGCCTTCCTTTTCTCCAGCTGGTCGAACAAGCAGGACAACGAGGA
GTTCTTCAACGGCTACCAGGACACGGAGCGCAAGGCGACGACAGCCACTG
TCGCGACCATCCACCGACGAGCCCCAGCGGTGGACAGAGGCGGGCGTGGG
AACGAGGACACGAGGCCCTGGAGGTGGGGGGACCCTCTGCCAGGAAGCTC
TGAGGGGGACGGTCCAGGTAGTTTACTGGCCCGGGTGCCTCGGCGTCAGG
CGTCGAGGAGAGGGTTTGGGAGCCTAGTGGAAGCCGCGTGCCGACGCTTG
AAGGGGGCGGGCGATGGGAACGAAAGAAGAAAGAAAAAAGAGCGCGACTG
CAAAAGCGGAAAGGAACCGTCTCGGACCTCCCAGCCTGGTTGA
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protein sequence of rna6681

>rna6681-protein ID=rna6681-protein|Name=rna6681|organism=Nannochloropsis gaditana|type=polypeptide|length=404bp
MVLVNVNVHAGNERRLSSGPFTRIPGNKHHAERSPRSSLQYSPTLNFNRG
SSTRRVREGLLDVDFVRSANAFNTEPPRFSSVLWRGAFRILFFPFAFSWW
KGRRLPFVTYVAGTLLYFAQGLASFLVLWDGGSILMRCDGWRRTSETVRQ
QLQAEAVIPVVLWLFSALSYGHLCAASQSEGLKTKKRRLTYAPPKTAGIA
KGEAEDEEEDEEEDKGKENGFVRHRKKRVPEVYNGDKMAHLNVQADGINE
GKHTGREEEEEGEEEEGEEEEEEEEEEEEEEEDLDDDEEEHHKEEMYSEE
LREQEAQHVIMKSNSSCSLPRPVARLVPRASPPPPRPRHPCPHTRSLPYP
LPSPESSRQPALPANAPHLPSTSRTHAGRRKKRKACSAWEGTRWGAGPPS
ESRS
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mRNA from alignment at CM002469.1:242658..245333+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna6681 ID=rna6681|Name=rna6681|organism=Nannochloropsis gaditana|type=mRNA|length=2676bp|location=Sequence derived from alignment at CM002469.1:242658..245333+ (Nannochloropsis gaditana)
aAACACGCCTTTCTGGAATGTTGATCCTGCCTCTTCTAACGCCACGATCA
TCTAGCAGGGCCAGTACTTATGGTACTTGTCAATGTCAACGTTCATGCTG
GCAACGAGAGAAGGTTGTCGTCTGGGCCCTTCACGAGGATTCCTGGCAAC
AAGCATCATGCCGAGAggtctcctcgctcttccctACAGTACTCGCCCAC
ACTAAATTTCAATAGAGGGTCATCGACAAGACGTGTACGGGAAGGTTTAC
TGGATGTTGATTTTGTTCGTAGCGCCAACGCTTTTAATACAGAGCCTCCG
AGGTTTTCCTCCGTTCTGTGGCGGGGGGCCTTCAGaattcttttctttcc
tttcgcCTTTTCATGGTGGAAGGGACGTCGTCTGCCTTTCGTCACATACG
TCGCAGGCACTCTACTGTATTTTGCCCAAGGCCTGGCATCGTTTCTTGTA
CTCTGGGATGGTGGTTCAATATTAATGCGGTGCGAtggctggagaaggac
gtcGGAGACTGTCCGGCAGCAGCTACAGGCAGAGGCGGTCATTCCTGTAG
TCTTGTGGCTATTCTCCGCGTTGTCATACGGCCATTTGTGCGCAGCATCG
CAGTCTGAAGGTTTGAAGACGAAAAAACGGCGACTCACATATGCCCCTCC
AAAGACTGCGGGCATAgcgaaaggagaggcagaggacgaggaggaggacg
aggaggaggacaaagggaaggaaaacggcTTTGTAAGGCATCGCAAGAAG
CGTGTTCCTGAGGTTTATAATGGTGACAAGATGGCTCATTTGAATGTACA
GGCGGATGGCATTAATGAGGGCAAACatacggggagggaggaggaggagg
agggggaggaggaggagggggaggaggaggaggaggaggaggaggaggag
gaggaggaagaagaagatcttgacgatgacgaggaagagcacCACAAGGA
AGAGATGTACAGCGAGGAGCTCCGAGAGCAGGAAGCGCAGCATGTTATCA
TGAAGAGTAACAGCAGCTGTAGCCTGCCCCGTCCCGTCGCGCGCCTGGTT
CCCCGagcatccccccccccacctcgtccccgccatcCTTGCCCGCAcac
ccgctcccttccttatCCCCTACCCTCACCGGAGTCCTCTCGCCAGCCCG
CCCTGCCTGCAAACgccccccatctcccttcaACGTCACGGACTCatgcc
gggaggaggaagaagaggaaggcatgcTCGGCCTGGGAAGGAACCCgctg
gggggcggggcctccGTCCGAGTCACGCTCTTGAATCAGAATGGACAGCG
GTACAAGGTGGGGATGACGCTCAGTCAGATGCGGCGCCGTCTGGTAGACC
GCGTCGCTCTCACGGAGCAGGACTGGATGTACAGGACCGGGGTTCCCCTG
GCCGGGGCGtccttggcggccgccgcccccctcttGCATCGGCTGTGGat
ggcgtgggaggaaggggggcagaCAAGGGCGGCTCCAGGCGTCAGTGGCC
ATGTCCCTTTAAAAAGCGCCCGGCTTTGGTTTGgcctgctccctttcctc
ctcgttcaggaggcggaggacgctcTGCATGCGGGGGGGCAGTACGACcc
ggccagggaggaagggaccaGCTGCCGCGACGAAATCAAAGGGGCCTGTC
GGTCGGCCTTGGGCGCCGTCCGCCTCGTGAGCTTCCTCGCGGTCTACCTG
CTGGCCTGGAGCATCTTCCGGCAAGTCCTCTCGGCCACGGAGCTGGTCTT
CAAGAAACGCTACAAGTACAGCAAACTCTTCTCCATGcttacctccttct
ccaaagCCAGCCGCTACGCCATCCCGCACTTCACGCTCAAGAACCCTCTC
AACATCAAGATGTGGTTGGCCCTCCGCGGGGGCCGGGCCTGGCTCCGCCG
CTTCGAGGCCCAACGCGTGGCCGACACggtcgtctcctccaccttccgga
ccgtcgccttcttcctggcCGTCCTGTGTGTGGAGGTCTTCCTCTGCAAG
GACGTGCGTCCCTTTCTCACGGAGTTGTGGCACTGGGAGCTGGTAATATG
GGGCGGCatctcttccatcttcctcctccgctttttctccttgggGACGC
GGACGAACGAGAAGTTCGGCGacaccaccatcctcctGACCGAGCAACTG
AACGTCCAACTCCGCATTTTTGAGAACTGCAGCCGAAGCAACGATCGTGC
AAAGCTCGGGAAGCTTCAGATATCATCCAACGTCCTGAAGCTGGCGGTGA
AACTCTTGCGGGAACTGGACTCGCCCAATCGCGTCAGCGGGCTAAGCATG
TCTCCTACCCTCGTGCGAGTCACGCGCGTTATCCTTCTTTCCGCCTTGAG
TGCCTTGGTCAGCGACGTCTTCGGCTTCAAGCTAAAGGTGAACCAATTGT
TGAAGTGAGAGGCACGTTGGAAGGTCGGGTCCACGAGGGACTCTACCTTC
GAACGTGCATTCGGACGGGGCGCAACCTTTTCCAGGGCCCGTCCTGACTG
CGGGCGTGCAGGTCAGTCGGGAAAAAGCAATATCttggggggaaatgagc
CCGGTAGAGTAAGTGTAAAATAACAACGAGCTTTTCTGATCCGATCAAAG
GGACCGGGTCACCTGATACAAGCAATTCCGGGTGCCTCATGGCCCTTGCA
TTACTTTGGTATTCTTTGTGCTTTGA
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Coding sequence (CDS) from alignment at CM002469.1:242658..245333+

>rna6681 ID=rna6681|Name=rna6681|organism=Nannochloropsis gaditana|type=CDS|length=1215bp|location=Sequence derived from alignment at CM002469.1:242658..245333+ (Nannochloropsis gaditana)
ATGGTACTTGTCAATGTCAACGTTCATGCTGGCAACGAGAGAAGGTTGTC
GTCTGGGCCCTTCACGAGGATTCCTGGCAACAAGCATCATGCCGAGAggt
ctcctcgctcttccctACAGTACTCGCCCACACTAAATTTCAATAGAGGG
TCATCGACAAGACGTGTACGGGAAGGTTTACTGGATGTTGATTTTGTTCG
TAGCGCCAACGCTTTTAATACAGAGCCTCCGAGGTTTTCCTCCGTTCTGT
GGCGGGGGGCCTTCAGaattcttttctttcctttcgcCTTTTCATGGTGG
AAGGGACGTCGTCTGCCTTTCGTCACATACGTCGCAGGCACTCTACTGTA
TTTTGCCCAAGGCCTGGCATCGTTTCTTGTACTCTGGGATGGTGGTTCAA
TATTAATGCGGTGCGAtggctggagaaggacgtcGGAGACTGTCCGGCAG
CAGCTACAGGCAGAGGCGGTCATTCCTGTAGTCTTGTGGCTATTCTCCGC
GTTGTCATACGGCCATTTGTGCGCAGCATCGCAGTCTGAAGGTTTGAAGA
CGAAAAAACGGCGACTCACATATGCCCCTCCAAAGACTGCGGGCATAgcg
aaaggagaggcagaggacgaggaggaggacgaggaggaggacaaagggaa
ggaaaacggcTTTGTAAGGCATCGCAAGAAGCGTGTTCCTGAGGTTTATA
ATGGTGACAAGATGGCTCATTTGAATGTACAGGCGGATGGCATTAATGAG
GGCAAACatacggggagggaggaggaggaggagggggaggaggaggaggg
ggaggaggaggaggaggaggaggaggaggaggaggaggaagaagaagatc
ttgacgatgacgaggaagagcacCACAAGGAAGAGATGTACAGCGAGGAG
CTCCGAGAGCAGGAAGCGCAGCATGTTATCATGAAGAGTAACAGCAGCTG
TAGCCTGCCCCGTCCCGTCGCGCGCCTGGTTCCCCGagcatccccccccc
cacctcgtccccgccatcCTTGCCCGCAcacccgctcccttccttatCCC
CTACCCTCACCGGAGTCCTCTCGCCAGCCCGCCCTGCCTGCAAACgcccc
ccatctcccttcaACGTCACGGACTCatgccgggaggaggaagaagagga
aggcatgcTCGGCCTGGGAAGGAACCCgctggggggcggggcctccGTCC
GAGTCACGCTCTTGA
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Synonyms
Publications