EWM24024.1, cds6665 (CDS) Nannochloropsis gaditana

Overview
NameEWM24024.1
Unique Namecds6665
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002469.1:242727..243941 +

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Properties
Property NameValue
Protein idEWM24024.1
ProductTranscription factor homeodomain, male germ-cell
Orig transcript idgnl|cribi|Naga_100040g32.2022.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002469.1supercontigCM002469.1:242727..243941 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
Vocabulary: INTERPRO
TermDefinition
IPR021980TF_homeodomain_male
Homology
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BLAST of EWM24024.1 vs. NCBI_GenBank
Match: gi|585105311|gb|EWM24024.1| (Transcription factor homeodomain, male germ-cell [Nannochloropsis gaditana])

HSP 1 Score: 825.083 bits (2130), Expect = 0.000e+0
Identity = 404/404 (100.00%), Postives = 404/404 (100.00%), Query Frame = 0 
Query:    1 MVLVNVNVHAGNERRLSSGPFTRIPGNKHHAERSPRSSLQYSPTLNFNRGSSTRRVREGLLDVDFVRSANAFNTEPPRFSSVLWRGAFRILFFPFAFSWWKGRRLPFVTYVAGTLLYFAQGLASFLVLWDGGSILMRCDGWRRTSETVRQQLQAEAVIPVVLWLFSALSYGHLCAASQSEGLKTKKRRLTYAPPKTAGIAKGEAEDEEEDEEEDKGKENGFVRHRKKRVPEVYNGDKMAHLNVQADGINEGKHTGREEEEEGEEEEGEEEEEEEEEEEEEEEDLDDDEEEHHKEEMYSEELREQEAQHVIMKSNSSCSLPRPVARLVPRASPPPPRPRHPCPHTRSLPYPLPSPESSRQPALPANAPHLPSTSRTHAGRRKKRKACSAWEGTRWGAGPPSESRS 404
            MVLVNVNVHAGNERRLSSGPFTRIPGNKHHAERSPRSSLQYSPTLNFNRGSSTRRVREGLLDVDFVRSANAFNTEPPRFSSVLWRGAFRILFFPFAFSWWKGRRLPFVTYVAGTLLYFAQGLASFLVLWDGGSILMRCDGWRRTSETVRQQLQAEAVIPVVLWLFSALSYGHLCAASQSEGLKTKKRRLTYAPPKTAGIAKGEAEDEEEDEEEDKGKENGFVRHRKKRVPEVYNGDKMAHLNVQADGINEGKHTGREEEEEGEEEEGEEEEEEEEEEEEEEEDLDDDEEEHHKEEMYSEELREQEAQHVIMKSNSSCSLPRPVARLVPRASPPPPRPRHPCPHTRSLPYPLPSPESSRQPALPANAPHLPSTSRTHAGRRKKRKACSAWEGTRWGAGPPSESRS
Sbjct:    1 MVLVNVNVHAGNERRLSSGPFTRIPGNKHHAERSPRSSLQYSPTLNFNRGSSTRRVREGLLDVDFVRSANAFNTEPPRFSSVLWRGAFRILFFPFAFSWWKGRRLPFVTYVAGTLLYFAQGLASFLVLWDGGSILMRCDGWRRTSETVRQQLQAEAVIPVVLWLFSALSYGHLCAASQSEGLKTKKRRLTYAPPKTAGIAKGEAEDEEEDEEEDKGKENGFVRHRKKRVPEVYNGDKMAHLNVQADGINEGKHTGREEEEEGEEEEGEEEEEEEEEEEEEEEDLDDDEEEHHKEEMYSEELREQEAQHVIMKSNSSCSLPRPVARLVPRASPPPPRPRHPCPHTRSLPYPLPSPESSRQPALPANAPHLPSTSRTHAGRRKKRKACSAWEGTRWGAGPPSESRS 404
The following BLAST results are available for this feature:
BLAST of EWM24024.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 1
Match NameE-valueIdentityDescription
gi|585105311|gb|EWM24024.1|0.000e+0100.00Transcription factor homeodomain, male germ-cell [... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6681rna6681Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications