|
|
Properties
| Property Name | Value |
|---|
| Product | lin1 family protein |
| Orig transcript id | gnl|cribi|Naga_100040g30.2033.mrna |
| Orig protein id | gnl|cribi|Naga_100040g30.2033 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002469.1 | supercontig | CM002469.1:238608..240287 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna6679 ID=rna6679|Name=rna6679|organism=Nannochloropsis gaditana|type=mRNA|length=1249bp
AGAAACACTGGCGAGAGAGAGAAGGGGTTCCTAACCCTACCACGCGGGAT
GGAGCCATGGGAACGTCTCGCAGCCCAGGGGGGCGGTCGCGAGCGTGGGT
CGCTTTGCAACACCATTGTCAGGGGTCTTTTTGTTGGCGTTTAATGGCAG
CCACCAGGCTGAGGCCATTGCCTGATGGCAAAGCAGGGAGTGCCCGTGTT
CTCCTGAGGGAGCCGTCTTTCGGAAAGCGCAGCTCTGTAAGGAGCAATGT
CCAATTTCGTGCCCGACACTCCATCATGTTTACGTATTTCTAAAGTCATC
TCCTCGGCGCGTAGAAGTTTAACAGTGTGTAGCAGGGAATTTACTTTTCC
GCGCCGTCACTTGCCTCTGCGCATGCGAGACGGATTCGCAGTCTTGATTC
CTTTCCTCTTCCCACACGCTCAACACACCACCCATCCTTCCCTTTATCAT
CCTAGCCCTCAGTGACATGGCTTTCGCGCGGACGGTGGCCCGCCAGATGG
GTCATGGCTTGGAGCGTGTCGATGTCAGCCTCTCCATGCGGAAGTGGTGG
AAACTCGGATACACGCGTCAGAACGGTTTGATCACAAAGTCTCTCTCCCC
CTTCGAGCAGCGTATCATCTCGCCCATGTTCGACGATGCCCCGAATAAGG
TCCTCAAGTACTTGAAGCGTTGGTCCACCACCATCCTCCCCGCCTTCGTC
ATCACGTACTCGACGGTGAAATGGGCCGACTGGGAGTTCGACCAGATCCA
TCGCGAGCACTGGGACTAGGGGGTGTGGAGGCCTGGGAGGGACGGTGGGT
TCAGCAATCGGCATGCGGCAGCTGCTCATGTGCGTGGTCAGAGGAGGAAG
GGCGATGTTGGCGCAGGTAGCAAGGGAACGAGAGCGGTGGAGGCGTTGGA
CCGGCGTCGGACTCACCTGTGGGGAAGGCCCCGTTGAGGGGGTGCTGTGC
GTCAGGAATTCGTCTCCTAGTGGGAGTCCCGGGCCCCGGGCCGGCATCGC
GAATCAAAACCATCGGATCGAACGATGCCAAATGATGGAAAAGAAGGTAG
TTTATCTTAAAATGAAAAATATTTCCGGAGTTTCATGAACTCCGATATTC
GATACGTCTTGTGCTGTATCATTTTTTAACTGGAAAACCAAACTCGAACT
CTGCATTATACAATTCCAAATTCAGATCAACCTTCTTTCCACATGTCAAA
TACTAATACCTTCATAGCCACACGTTTCTTTCCTTGTGGCTTCCGTTCT back to topprotein sequence of rna6679 >rna6679-protein ID=rna6679-protein|Name=rna6679|organism=Nannochloropsis gaditana|type=polypeptide|length=405bp
MSGRGRGGGRGRGAGRGRGGDRGRDGQDGLGRPGKERCSNNNGSDVREFE
DEFDMVQARRQIKGEEEDDYDAGATGGQDVEGDDDEEDDERKVRRMTKQF
AWEEERMEEEFNEAGDKMEPFNLKNERTEGFFDETGNFVWKKEEGGEDAW
LASLENEEDLEARIGEAAVARKKKDDEDAEGEEPPEFVDQWALKERLLTF
LRPGETVLALKRLGPREGRKEGGGVEAGGKAMVQKRVDVRTPEEKEAFEQ
VTELADQLLRAGAVEVYDVAYEAMRAGLEGGDEGRRGGRKRPAVGMSRDG
GEVLWEYKGPDGLVHGPYSSETIRAWRAQGFFTGPTAVEMRRVGSGTGAT
KQVGEPSRKKVTFSVATLAADFEDDEEGGGQGGREAGAREGEWVGSDAID
WSAQT back to topmRNA from alignment at CM002469.1:238608..240287+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna6679 ID=rna6679|Name=rna6679|organism=Nannochloropsis gaditana|type=mRNA|length=1680bp|location=Sequence derived from alignment at CM002469.1:238608..240287+ (Nannochloropsis gaditana)
GCGGCGTGACCAGAAATGTGTCGAGGAGAACGTGTTAGCGGCCACGCGTT
CTGCAAAAGGAACGAAAAAGATGTGGCATATCTATGGTCCCAGACACCTA
CTTCTCATATTATTCGCGTTCACAGGCCAAGTTTTCCTTATCCATTTTCC
GACGAGAAAACAAGTGTGGCAAGACTGAATTGGAAATACGGAAGTAGTGG
TGCTTCCTGGAAAAAACACAAGACCAGCAGCACTCTCTCACAAGCAAAAA
GTCATCAATGTCGGGcagaggacgtggaggtggccGTGGTCGTGGTGCAG
GGCGCGGCCGGGGTGGAGAtaggggcagggacgggcaAGATGGACTCGGA
AGgcctgggaaggaaaggtgtTCAAATAATAACGGGAGCGATGTTAGGGA
ATTTGAGGACGAATTCGACATGGTGCAAGCAAGACGACAAATaaaaggcg
aggaggaggatgattaCGATGCAGGAGCGACAGGAGgccaggacgtggag
ggcgacgacgacgaggaggacgacgagcgGAAGGTAAGGCGCATGACCAA
ACAGTtcgcgtgggaggaggagaggatggaggaggagttcaACGAAGCCG
GGGACAAAATGGAGCCTTTCAATTTGAAAAATGAGCGGACGGAGGGTTTT
TTCGACGAAACGGGCAATTTTgtgtggaaaaaggaggaagggggcgaagA
TGCCTGGTTGGCCTCTTTGGAAAACgaggaggatttggaggctCGCATTG
GCGAGGCCGCGGTGGCGCGGAAGAAAAAgtgagtgaaggaggggagggcg
gggcgatTGAACGATAGGCGAGACACCAGTGTGCGCCTTGGTCCAGGGGG
GCGAACGGTCATCCCCTATGCCCCTCCTTACGATgcatttcccccttttt
taaTAACTCCCATGCGGCGTCACAGGGACGATGAGGATGCAGAGGGTGAG
GAGCCGCCCGAGTTCGTGGACCAATGGGCTTTGAAGGAAAGGCTGCTAAC
GTTCCTGCGACCCGGAGAGACCGTCCTGGCGCTGAAACGACTGGGCcctc
gggagggaaggaaggaggggggaggggttgaaGCGGGGGGTAAAGCAATG
GTGCAGAAGCGTGTGGATGTCCGAACgccggaagaaaaggaggcattCGA
GCAGGTGACGGAGCTAGCGGACCAGCTtctgcgggcgggggcggtggagg
tgtaTGACGTGGCGTATGAGGCCATGCGGGCaggcctggaaggaggggac
gaagggcggaggggggggcgaaagCGGCCGGCGGTGGGCATGAGCAGGGA
TGGGGGCGAGGTCCTGTGGGAGTACAAGGGGCCCGACGGCTTGGTGCATG
GGCCCTACAGCAGCGAGACCATCCGGGCCTGGCGGGCGCAGGGCTTCTTC
ACGGGGCCGACGGCggtggagatgaggagggtgggaagcggCACCGGGGC
TACAAAGCAGGTAGGGGAGCCGAGTAGGAAGAAGGTGACGTTCAGTGTCG
CGACGCTGGCGGCAGACtttgaggacgatgaggagggagggggccagggg
ggcagggaggcaggggcaagagagggggagtggGTGGGTTCCGATGCCAT
CGATTGGTCGGCTCAGACGTGATAAAAAAAGTGGGGTCGAACGCCTGCAT
TTTAGAGCACAAATCAATCAAACTCAACCA back to topCoding sequence (CDS) from alignment at CM002469.1:238608..240287+ >rna6679 ID=rna6679|Name=rna6679|organism=Nannochloropsis gaditana|type=CDS|length=2436bp|location=Sequence derived from alignment at CM002469.1:238608..240287+ (Nannochloropsis gaditana)
ATGTCGGGcagaggacgtggaggtggccGTGGTCGTGGTGCAGGGCGCGG
CCGGGGTGGAGAtaggggcagggacgggcaAGATGGACTCGGAAGgcctg
ggaaggaaaggtgtTCAAATAATAACGGGAGCGATGTTAGGGAATTTGAG
GACGAATTCGACATGGTGCAAGCAAGACGACAAATaaaaggcgaggagga
ggatgattaCGATGCAGGAGCGACAGGAGgccaggacgtggagggcgacg
acgacgaggaggacgacgagcgGAAGGTAAGGCGCATGACCAAACAGTtc
gcgtgggaggaggagaggatggaggaggagttcaACGAAGCCGGGGACAA
AATGGAGCCTTTCAATTTGAAAAATGAGCGGACGGAGGGTTTTTTCGACG
AAACGGGCAATTTTgtgtggaaaaaggaggaagggggcgaagATGCCTGG
TTGGCCTCTTTGGAAAACgaggaggatttggaggctCGCATTGGCGAGGC
CGCGGTGGCGCGGAAGAAAAAGGACGATGAGGATGCAGAGGGTGAGGAGC
CGCCCGAGTTCGTGGACCAATGGGCTTTGAAGGAAAGGCTGCTAACGTTC
CTGCGACCCGGAGAGACCGTCCTGGCGCTGAAACGACTGGGCcctcggga
gggaaggaaggaggggggaggggttgaaGCGGGGGGTAAAGCAATGGTGC
AGAAGCGTGTGGATGTCCGAACgccggaagaaaaggaggcattCGAGCAG
GTGACGGAGCTAGCGGACCAGCTtctgcgggcgggggcggtggaggtgta
TGACGTGGCGTATGAGGCCATGCGGGCaggcctggaaggaggggacgaag
ggcggaggggggggcgaaagCGGCCGGCGGTGGGCATGAGCAGGGATGGG
GGCGAGGTCCTGTGGGAGTACAAGGGGCCCGACGGCTTGGTGCATGGGCC
CTACAGCAGCGAGACCATCCGGGCCTGGCGGGCGCAGGGCTTCTTCACGG
GGCCGACGGCggtggagatgaggagggtgggaagcggCACCGGGGCTACA
AAGCAGGTAGGGGAGCCGAGTAGGAAGAAGGTGACGTTCAGTGTCGCGAC
GCTGGCGGCAGACtttgaggacgatgaggagggagggggccaggggggca
gggaggcaggggcaagagagggggagtggGTGGGTTCCGATGCCATCGAT
TGGTCGGCTCAGACGTGAATGTCGGGcagaggacgtggaggtggccGTGG
TCGTGGTGCAGGGCGCGGCCGGGGTGGAGAtaggggcagggacgggcaAG
ATGGACTCGGAAGgcctgggaaggaaaggtgtTCAAATAATAACGGGAGC
GATGTTAGGGAATTTGAGGACGAATTCGACATGGTGCAAGCAAGACGACA
AATaaaaggcgaggaggaggatgattaCGATGCAGGAGCGACAGGAGgcc
aggacgtggagggcgacgacgacgaggaggacgacgagcgGAAGGTAAGG
CGCATGACCAAACAGTtcgcgtgggaggaggagaggatggaggaggagtt
caACGAAGCCGGGGACAAAATGGAGCCTTTCAATTTGAAAAATGAGCGGA
CGGAGGGTTTTTTCGACGAAACGGGCAATTTTgtgtggaaaaaggaggaa
gggggcgaagATGCCTGGTTGGCCTCTTTGGAAAACgaggaggatttgga
ggctCGCATTGGCGAGGCCGCGGTGGCGCGGAAGAAAAAGGACGATGAGG
ATGCAGAGGGTGAGGAGCCGCCCGAGTTCGTGGACCAATGGGCTTTGAAG
GAAAGGCTGCTAACGTTCCTGCGACCCGGAGAGACCGTCCTGGCGCTGAA
ACGACTGGGCcctcgggagggaaggaaggaggggggaggggttgaaGCGG
GGGGTAAAGCAATGGTGCAGAAGCGTGTGGATGTCCGAACgccggaagaa
aaggaggcattCGAGCAGGTGACGGAGCTAGCGGACCAGCTtctgcgggc
gggggcggtggaggtgtaTGACGTGGCGTATGAGGCCATGCGGGCaggcc
tggaaggaggggacgaagggcggaggggggggcgaaagCGGCCGGCGGTG
GGCATGAGCAGGGATGGGGGCGAGGTCCTGTGGGAGTACAAGGGGCCCGA
CGGCTTGGTGCATGGGCCCTACAGCAGCGAGACCATCCGGGCCTGGCGGG
CGCAGGGCTTCTTCACGGGGCCGACGGCggtggagatgaggagggtggga
agcggCACCGGGGCTACAAAGCAGGTAGGGGAGCCGAGTAGGAAGAAGGT
GACGTTCAGTGTCGCGACGCTGGCGGCAGACtttgaggacgatgaggagg
gagggggccaggggggcagggaggcaggggcaagagagggggagtggGTG
GGTTCCGATGCCATCGATTGGTCGGCTCAGACGTGA back to top
|