EWM24035.1, cds6663 (CDS) Nannochloropsis gaditana
|
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM24035.1 vs. NCBI_GenBank
Match: gi|585105322|gb|EWM24035.1| (lin1 family protein [Nannochloropsis gaditana]) HSP 1 Score: 786.178 bits (2029), Expect = 0.000e+0 Identity = 405/405 (100.00%), Postives = 405/405 (100.00%), Query Frame = 0
Query: 1 MSGRGRGGGRGRGAGRGRGGDRGRDGQDGLGRPGKERCSNNNGSDVREFEDEFDMVQARRQIKGEEEDDYDAGATGGQDVEGDDDEEDDERKVRRMTKQFAWEEERMEEEFNEAGDKMEPFNLKNERTEGFFDETGNFVWKKEEGGEDAWLASLENEEDLEARIGEAAVARKKKDDEDAEGEEPPEFVDQWALKERLLTFLRPGETVLALKRLGPREGRKEGGGVEAGGKAMVQKRVDVRTPEEKEAFEQVTELADQLLRAGAVEVYDVAYEAMRAGLEGGDEGRRGGRKRPAVGMSRDGGEVLWEYKGPDGLVHGPYSSETIRAWRAQGFFTGPTAVEMRRVGSGTGATKQVGEPSRKKVTFSVATLAADFEDDEEGGGQGGREAGAREGEWVGSDAIDWSAQT 405
MSGRGRGGGRGRGAGRGRGGDRGRDGQDGLGRPGKERCSNNNGSDVREFEDEFDMVQARRQIKGEEEDDYDAGATGGQDVEGDDDEEDDERKVRRMTKQFAWEEERMEEEFNEAGDKMEPFNLKNERTEGFFDETGNFVWKKEEGGEDAWLASLENEEDLEARIGEAAVARKKKDDEDAEGEEPPEFVDQWALKERLLTFLRPGETVLALKRLGPREGRKEGGGVEAGGKAMVQKRVDVRTPEEKEAFEQVTELADQLLRAGAVEVYDVAYEAMRAGLEGGDEGRRGGRKRPAVGMSRDGGEVLWEYKGPDGLVHGPYSSETIRAWRAQGFFTGPTAVEMRRVGSGTGATKQVGEPSRKKVTFSVATLAADFEDDEEGGGQGGREAGAREGEWVGSDAIDWSAQT
Sbjct: 1 MSGRGRGGGRGRGAGRGRGGDRGRDGQDGLGRPGKERCSNNNGSDVREFEDEFDMVQARRQIKGEEEDDYDAGATGGQDVEGDDDEEDDERKVRRMTKQFAWEEERMEEEFNEAGDKMEPFNLKNERTEGFFDETGNFVWKKEEGGEDAWLASLENEEDLEARIGEAAVARKKKDDEDAEGEEPPEFVDQWALKERLLTFLRPGETVLALKRLGPREGRKEGGGVEAGGKAMVQKRVDVRTPEEKEAFEQVTELADQLLRAGAVEVYDVAYEAMRAGLEGGDEGRRGGRKRPAVGMSRDGGEVLWEYKGPDGLVHGPYSSETIRAWRAQGFFTGPTAVEMRRVGSGTGATKQVGEPSRKKVTFSVATLAADFEDDEEGGGQGGREAGAREGEWVGSDAIDWSAQT 405
BLAST of EWM24035.1 vs. NCBI_GenBank
Match: gi|567979376|gb|ETL29855.1| (hypothetical protein L916_17065 [Phytophthora parasitica] >gi|570316966|gb|ETO64914.1| hypothetical protein F444_17674 [Phytophthora parasitica P1976]) HSP 1 Score: 141.354 bits (355), Expect = 2.432e-35 Identity = 105/309 (33.98%), Postives = 151/309 (48.87%), Query Frame = 0
Query: 118 MEPFNLKNERTEGFFDETGNFVWKKE--EGGEDAWLASLENEEDLEARIGEAAVARKKKDDEDAEGEEPPEFVDQWALKERLLTFLRPGETVL-ALKRLGPREGRKEGGGVEAGGKAMVQKRVDV---RTPEEKEAFEQVTELADQLLRAGAVEVYDVAYE---------AMRAGLEGGDEGRRGGRKRPAVGMSRDGGEVLWEYKGPDGLVHGPYSSETIRAWRAQGFFTGPTAVEMRRVGSGTGATKQVGEPSRKKVTFSVATLAA------DFEDD--EEGGGQGGREAGAREGEWVGSDAIDWSA 403
M F+++ E+ EG FD GNFVW E + E+AWL + E ++G A A+ +++ D + EE + + L T L+P ETVL ALKRLG K+ V G K ++ + +T EEK+ FEQ+TE AD L+R+G VEVY E A R ++ +E + P EV+WEYK DG +HGP+ + + AW+ QG+F G TAV+MR+ S A + S KK ++A DFED E+ + E W SD ID+S+
Sbjct: 9 MTAFDMEEEKDEGHFDADGNFVWDDEAKKVQEEAWLDDIS-----EQQMGAARSAKSRREFRDEQAEET---MTKEVANRTLATLLKPRETVLQALKRLGS----KKSARVRPGYKCKQAQKNETEPEQTAEEKKQFEQITEAADFLMRSGEVEVYSQIKEEFIPEEELLAQRRRVQFAEEKDSKSEENPP------KQEVMWEYKATDGQIHGPFPTSSFVAWQQQGYFKGETAVDMRQAQSNDEAAAESNNESNKKQKLECEKVSAEQEMLNDFEDSDGEDDSPAADDKEKTNENPWKRSDTIDFSS 299
BLAST of EWM24035.1 vs. NCBI_GenBank
Match: gi|675174491|ref|XP_008896130.1| (hypothetical protein PPTG_04060 [Phytophthora parasitica INRA-310] >gi|567950707|gb|ETK76415.1| hypothetical protein L915_17170 [Phytophthora parasitica] >gi|568008869|gb|ETL83083.1| hypothetical protein L917_16892 [Phytophthora parasitica] >gi|568038785|gb|ETM36302.1| hypothetical protein L914_16973 [Phytophthora parasitica] >gi|568103803|gb|ETN18460.1| hypothetical protein PPTG_04060 [Phytophthora parasitica INRA-310] >gi|570940759|gb|ETP06016.1| hypothetical protein F441_17501 [Phytophthora parasitica CJ01A1] >gi|970660646|gb|KUF98176.1| CD2 antigen cytoplasmic tail-binding protein 2 [Phytophthora nicotianae]) HSP 1 Score: 140.198 bits (352), Expect = 7.021e-35 Identity = 105/309 (33.98%), Postives = 151/309 (48.87%), Query Frame = 0
Query: 118 MEPFNLKNERTEGFFDETGNFVWKKE--EGGEDAWLASLENEEDLEARIGEAAVARKKKDDEDAEGEEPPEFVDQWALKERLLTFLRPGETVL-ALKRLGPREGRKEGGGVEAGGKAMVQKRVDV---RTPEEKEAFEQVTELADQLLRAGAVEVYDVAYE---------AMRAGLEGGDEGRRGGRKRPAVGMSRDGGEVLWEYKGPDGLVHGPYSSETIRAWRAQGFFTGPTAVEMRRVGSGTGATKQVGEPSRKKVTFSVATLAA------DFEDD--EEGGGQGGREAGAREGEWVGSDAIDWSA 403
M F+++ E+ EG FD GNFVW E + E+AWL + E ++G A A+ +++ D + EE + + L T L+P ETVL ALKRLG K+ V G K ++ + +T EEK+ FEQ+TE AD L+R+G VEVY E A R ++ +E + P EV+WEYK DG +HGP+ + + AW+ QG+F G TAV+MR+ S A + S KK ++A DFED E+ + E W SD ID+S+
Sbjct: 9 MTAFDMEEEKDEGHFDADGNFVWDDEAKKVQEEAWLDDIS-----EQQMGAARSAKSRREFRDEQAEET---MTKEVANRTLATLLKPRETVLQALKRLGS----KKSARVRPGYKRKQAQKNETEPEQTAEEKKQFEQITEAADFLMRSGEVEVYSQIKEEFIPEEELLAQRRRVQFAEEKDSKSEENPP------KQEVMWEYKATDGQIHGPFPTSSFVAWQQQGYFKGETAVDMRQAQSNDEAAAESNNESNKKQKLECEKVSAEQEMLNDFEDSDGEDDSPAADDKEKTNENPWKRSDTIDFSS 299
BLAST of EWM24035.1 vs. NCBI_GenBank
Match: gi|570971006|gb|ETP34125.1| (hypothetical protein F442_17489 [Phytophthora parasitica P10297]) HSP 1 Score: 140.198 bits (352), Expect = 8.205e-35 Identity = 105/309 (33.98%), Postives = 151/309 (48.87%), Query Frame = 0
Query: 118 MEPFNLKNERTEGFFDETGNFVWKKE--EGGEDAWLASLENEEDLEARIGEAAVARKKKDDEDAEGEEPPEFVDQWALKERLLTFLRPGETVL-ALKRLGPREGRKEGGGVEAGGKAMVQKRVDV---RTPEEKEAFEQVTELADQLLRAGAVEVYDVAYE---------AMRAGLEGGDEGRRGGRKRPAVGMSRDGGEVLWEYKGPDGLVHGPYSSETIRAWRAQGFFTGPTAVEMRRVGSGTGATKQVGEPSRKKVTFSVATLAA------DFEDD--EEGGGQGGREAGAREGEWVGSDAIDWSA 403
M F+++ E+ EG FD GNFVW E + E+AWL + E ++G A A+ +++ D + EE + + L T L+P ETVL ALKRLG K+ V G K ++ + +T EEK+ FEQ+TE AD L+R+G VEVY E A R ++ +E + P EV+WEYK DG +HGP+ + + AW+ QG+F G TAV+MR+ S A + S KK ++A DFED E+ + E W SD ID+S+
Sbjct: 9 MTAFDMEEEKDEGHFDADGNFVWDDEAKKVQEEAWLDDIS-----EQQMGAARSAKSRREFRDEQAEET---MTKEVANRTLATLLKPRETVLQALKRLGS----KKSARVRPGYKRKQAQKNETEPEQTAEEKKQFEQITEAADFLMRSGEVEVYSQIKEEFIPEEELLAQRRRVQFAEEKDSKSEENPP------KQEVMWEYKATDGQIHGPFPTSSFVAWQQQGYFKGETAVDMRQAQSNDEAAAESNNESNKKQKLECEKVSAEQEMLNDFEDSDGEDDSPAADDKEKTNENPWKRSDTIDFSS 299
BLAST of EWM24035.1 vs. NCBI_GenBank
Match: gi|566013281|gb|ETI36192.1| (hypothetical protein F443_17633 [Phytophthora parasitica P1569]) HSP 1 Score: 138.272 bits (347), Expect = 3.437e-34 Identity = 104/309 (33.66%), Postives = 151/309 (48.87%), Query Frame = 0
Query: 118 MEPFNLKNERTEGFFDETGNFVWKKE--EGGEDAWLASLENEEDLEARIGEAAVARKKKDDEDAEGEEPPEFVDQWALKERLLTFLRPGETVL-ALKRLGPREGRKEGGGVEAGGKAMVQKRVDV---RTPEEKEAFEQVTELADQLLRAGAVEVYDVAYE---------AMRAGLEGGDEGRRGGRKRPAVGMSRDGGEVLWEYKGPDGLVHGPYSSETIRAWRAQGFFTGPTAVEMRRVGSGTGATKQVGEPSRKKVTFSVATLAA------DFEDD--EEGGGQGGREAGAREGEWVGSDAIDWSA 403
M F+++ E+ EG FD GNFVW E + E+AWL + E ++G A A+ +++ D + EE + + L T L+P ETVL ALKRLG K+ V G K ++ + +T EEK+ FEQ+TE AD L+R+G VEVY E A R ++ +E + P EV+WEYK DG +HGP+ + + AW+ QG+F G TAV+MR+ S A + S KK ++A DFED E+ + E W S+ ID+S+
Sbjct: 9 MTAFDMEEEKDEGHFDADGNFVWDDEAKKVQEEAWLDDIS-----EQQMGAARSAKSRREFRDEQAEET---MTKEVANRTLATLLKPRETVLQALKRLGS----KKSARVRPGYKRKQAQKNETEPEQTAEEKKQFEQITEAADFLMRSGEVEVYSQIKEEFIPEEELLAQRRRVQFAEEKDSKSEENPP------KQEVMWEYKATDGQIHGPFPTSSFVAWQQQGYFKGETAVDMRQAQSNDEAAAESNNESNKKQKLECEKVSAEQEMLNDFEDSDGEDDSPAADDKEKTNENPWKRSNTIDFSS 299
BLAST of EWM24035.1 vs. NCBI_GenBank
Match: gi|970659653|gb|KUF97275.1| (Translation initiation factor eIF-2B subunit gamma [Phytophthora nicotianae]) HSP 1 Score: 129.798 bits (325), Expect = 8.486e-31 Identity = 101/297 (34.01%), Postives = 143/297 (48.15%), Query Frame = 0
Query: 130 GFFDETGNFVWKKE--EGGEDAWLASLENEEDLEARIGEAAVARKKKDDEDAEGEEPPEFVDQWALKERLLTFLRPGETVL-ALKRLGPREGRKEGGGVEAGGKAMVQKRVDV---RTPEEKEAFEQVTELADQLLRAGAVEVYDVAYE---------AMRAGLEGGDEGRRGGRKRPAVGMSRDGGEVLWEYKGPDGLVHGPYSSETIRAWRAQGFFTGPTAVEMRRVGSGTGATKQVGEPSRKKVTFSVATLAA------DFEDD--EEGGGQGGREAGAREGEWVGSDAIDWSA 403
G FD GNFVW E + E+AWL + E ++G A A+ +++ D + EE + + L T L+P ETVL ALKRLG K+ V G K ++ + +T EEK+ FEQ+TE AD L+R+G VEVY E A R ++ +E + P EV+WEYK DG +HGP+ + + AW+ QG+F G TAV+MR+ S A + S KK ++A DFED E+ + E W SD ID+S+
Sbjct: 46 GHFDADGNFVWDDEAKKVQEEAWLDDIS-----EQQMGAARSAKSRREFRDEQAEET---MTKEVANRTLATLLKPRETVLQALKRLGS----KKSARVRPGYKRKQAQKNETEPEQTAEEKKQFEQITEAADFLMRSGEVEVYSQIKEEFIPEEELLAQRRRVQFAEEKDSKSEENPP------KQEVMWEYKATDGQIHGPFPTSSFVAWQQQGYFKGETAVDMRQAQSNDEAAAESNNESNKKQKLECEKVSAEQEMLNDFEDSDGEDDSPAADDKEKTNENPWKRSDTIDFSS 324
BLAST of EWM24035.1 vs. NCBI_GenBank
Match: gi|1214699326|gb|OWZ12148.1| (hypothetical protein PHMEG_00014734 [Phytophthora megakarya]) HSP 1 Score: 127.487 bits (319), Expect = 3.542e-30 Identity = 114/320 (35.62%), Postives = 158/320 (49.38%), Query Frame = 0
Query: 118 MEPFNLKNERTEGFFDETGNFVWKKE--EGGEDAWLASLENEEDLEARIGEAAVARKKKD--DEDAEGEEPPEFVDQWALKERLLTFLRPGETVL-ALKRLGPREGRKEGGGVEAGGKAMVQKRVDVRTPEEKEAFEQVTELADQLLRAGAVEVYDVAYE--------AMRAGLEGGDEGRRGGRKRPAVGMSRDGGEVLWEYKGPDGLVHGPYSSETIRAWR-----------------AQGFFTGPTAVEMRRVGSGTGATKQVGEPSRKKVTFSVATLAADFE----DDEEGGGQGGREAGAREGEWVGSDAIDWSA 403
M F+++ ER EG FD GNFVW E + E+AWL + E ++G A A+ +++ DE AE P+ ++ L T L+P ETVL ALKRLG K+ V AG K +R + +T EEK+ FEQVTE AD LLR+G V+VY E R ++ DE + + P EV+WEYK DG +HGP+ + + AW+ QG+F G TAV+MR+V S T AT +V E +KK ++A+ E D+ E A E W SD ID+S+
Sbjct: 5 MTAFHMEEERDEGHFDADGNFVWDDEAKKVQEEAWLDGVS-----EQQMGAAKHAKSRREFRDEQAEETMTPQGANR-----TLATLLQPRETVLQALKRLGS----KKTARVRAGNKRKQTQRNETQTEEEKKQFEQVTEAADFLLRSGEVDVYSQIREEFVPEEELVQRRQVQFQDEAK--SEENPP------KQEVMWEYKATDGQIHGPFPTSSFVAWQQQVEWKELVWNKWTDVVLQGYFKGDTAVDMRQVQS-TEATAEVKEQPKKKQKQEAEKVSAEQEMLNDFDDSDDEDAATEEKADENPWKRSDTIDFSS 301
BLAST of EWM24035.1 vs. NCBI_GenBank
Match: gi|301103646|ref|XP_002900909.1| (conserved hypothetical protein [Phytophthora infestans T30-4] >gi|262101664|gb|EEY59716.1| conserved hypothetical protein [Phytophthora infestans T30-4]) HSP 1 Score: 125.561 bits (314), Expect = 7.554e-30 Identity = 89/237 (37.55%), Postives = 125/237 (52.74%), Query Frame = 0
Query: 121 FNLKNERTEGFFDETGNFVWKKEEGG--EDAWLASLENEEDLEARIGEAAVARKKKDDEDAEGEEPPEFVDQWALKERLLTFLRPGETVL-ALKRLGPREGRKEGGGVEAGGKAMVQKRVDV---RTPEEKEAFEQVTELADQLLRAGAVEVYDVAYE---------AMRAGLEGGDEGRRGGRKRPAVGMSRDGGEVLWEYKGPDGLVHGPYSSETIRAWRAQGFFTGPTAVEMRR 342
FN++ E+ EG FD GNFVW E E+AWL + E +IG A A+ +++ D + EE + + A L T L P ETVL ALKRLG K+ + G K +R + +T EEK+ FEQVTE AD LLR+G V+VY E A R ++ +E ++P EV+WEYK DG +HGP+ + + AW+ QG+F G +AV+MR+
Sbjct: 4 FNMEEEKDEGHFDADGNFVWDDESKKVQEEAWLDDVS-----EQQIGAAKSAKSRREYRDEQVEET---MTEEAANRTLATLLNPRETVLHALKRLG----SKKSTRMRPGNKRKQAQRSETEPSQTAEEKKQFEQVTEAADFLLRSGEVDVYSQIKEEFVPEEELIAQRRRVQFAEETEAKSEEKPP------KQEVMWEYKATDGQIHGPFPTSSFVAWQQQGYFKGESAVDMRQ 222
BLAST of EWM24035.1 vs. NCBI_GenBank
Match: gi|695396762|ref|XP_009521563.1| (hypothetical protein PHYSODRAFT_484481 [Phytophthora sojae] >gi|348686460|gb|EGZ26275.1| hypothetical protein PHYSODRAFT_484481 [Phytophthora sojae]) HSP 1 Score: 122.094 bits (305), Expect = 1.472e-28 Identity = 88/241 (36.51%), Postives = 127/241 (52.70%), Query Frame = 0
Query: 118 MEPFNLKNERTEGFFDETGNFVWKKE--EGGEDAWLASLENEEDLEARIGEAAVARKKKDDEDAEGEEPPEFVDQWALKERLLTFLRPGETVL-ALKRLGPREGRKEGGGVEAGGK---AMVQKRVDVRTPEEKEAFEQVTELADQLLRAGAVEVYDVAYEAMRAGLEGGDEGRRGGRKRPAVGMSRDG----------GEVLWEYKGPDGLVHGPYSSETIRAWRAQGFFTGPTAVEMRR 342
M FN++ E+ EG FD GNFVW E + E+AWL + E ++G A A+ +++ D + EE + A L L+P ETVL ALKRLG ++ + V G K A +++ +T EEK+ FEQVTE AD L+R+G V+VY E +E R+ +V + D EV+WEYK DG +HGP+ + + AW+ QG+F G +AVEMR+
Sbjct: 1 MTAFNMEEEKDEGHFDADGNFVWDDEAKKVQEEAWLDGVS-----EQQMGAAKSAKSRREFRDEQAEET---LTTDAANRTLAALLKPRETVLQALKRLGSKKRER----VRPGSKRKQAQMKETQPAQTEEEKKQFEQVTEAADFLMRSGEVDVYSQIKEEF-----VPEEELLAQRRERSVQFAEDSEGKSEEHPPKQEVMWEYKATDGQIHGPFPTSSFVAWQQQGYFKGESAVEMRQ 224
BLAST of EWM24035.1 vs. NCBI_GenBank
Match: gi|1173949833|gb|OQR97833.1| (hypothetical protein THRCLA_06839 [Thraustotheca clavata]) HSP 1 Score: 117.472 bits (293), Expect = 4.715e-26 Identity = 86/249 (34.54%), Postives = 124/249 (49.80%), Query Frame = 0
Query: 111 FNEAGDKMEPFNLKNERTEGFFDETGNFVWKKEEGG--EDAWLASLENEEDLEARIGE-AAVARKKKDDEDAEGEEPPEFVDQWA---LKERLLTFLRPGETVL-ALKRLGPREGRKEGGGVEAGGKAMVQKRVDVRTPEEKEAFEQVTELADQLLRAGAVEVYDVAYEAMRAGLEGGDEGRRGGRKRPAVGMSRDGGEVLWEYKGPDGLVHGPYSSETIRAWRAQGFFTGPTAVEMRRVGS-GTGATK 351
F E G ++ PFNL+ +R +G FD +GNFVW K E EDAWL ++ + ED+E I E A + + +KDD++ V+ W K + L ETVL AL+RLG + K G A + + +TPE K F Q+T+ AD +LR G ++Y E + V WEY+ +G +HGPY ++TI WR G+F G +AV+MR+ S +GA K
Sbjct: 101 FEEEGVRIMPFNLEEDREDGHFDNSGNFVWAKTEKAVQEDAWLDNV-SAEDME--IAERAQILKSEKDDDE---------VETWTERRAKSVFMEILNEEETVLKALQRLGKKSKHKAGKKKNATSE-------NEQTPEMKREFNQLTDAADFMLRQGHTDIYHKPKEEI-------------------VDKPEPKSTTFWEYRTSEGQIHGPYPTDTIMQWRNMGYFQGESAVKMRQCASESSGAMK 311 The following BLAST results are available for this feature:
BLAST of EWM24035.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
|