rna6678, rna6678 (mRNA) Nannochloropsis gaditana

Overview
Namerna6678
Unique Namerna6678
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1751
Alignment locationCM002469.1:236585..238589 -

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100040g29.2026.mrna
Orig protein idgnl|cribi|Naga_100040g29.2026
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002469.1supercontigCM002469.1:236585..238589 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100040g29gene6456Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna6678rna6678-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM24028.1cds6662Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna6678 ID=rna6678|Name=rna6678|organism=Nannochloropsis gaditana|type=mRNA|length=1751bp
GCACTATGCCATGAATTTTCTTCGGAACCTCAACGTGAACAGTGATTTTT
CAATTTTTGGGGACCATGCATTTCTTATACTAAGAAGCCACGACTAGGGC
TGTTAGTCATCTTGCATTTGTTGTCATGCGACAACGTGCTAATTTGAACC
TCCCACAGCTATTACAACTAGTCAACACTACCTTTCGCGAACGCATGTTC
CGCTTTCATCCGCGCATCACCGTGGCATCTATTGTCGCTATTGCTGCTCT
GTCCCCTAAAACCATGGAGCGCTCCACATTTTTGGTGCACGCTATGAAAC
CCGGAGTAAATGCTTGTGGCGGGGCAAAGAGTTGGGCCTGCAATGTCGGC
ACGTCCTCACGTGCATCGTTTGCTGCATCACGAGGCTCCAATTTCAATCA
GCTTCCCCCTGTTGCCTTTCTGAGTCACAAGTCCTCCTTGACCTCAAACC
GGGAATACTCTCGAGGAGGCAAGGACACCATCACACACGCCTTTAATTGC
AAATCCGTCACCACGCCGATTAAATCGGGCAACCTTTTGTGGAGTATTGA
GCAGAAGCATTCGTATGCAGCGCGGGACCTGATTCGTCACTTTGCCTCTT
CTTCGTCTTCCAACCCGCCGCCAACTCCGCCCCGATATCCCGGACCAGAC
GATGAAGAGAGGAAAAAGGTCCACGAGAAAGTGGAAAGCGCACACGAGCA
CAAGAGCAAGGCCGGTGAGCTGTACGATGAGGTGAAAGATGAAGCGGGGA
CTGCGTGGCAGGGAACCAAGAATTTTGCAAGCGAGGCCAAGGAGGGCATC
GTCGACGCGGCTGTCGCTGCAAAAGACAAAGTGAAAGAAAAGCTGGGTGT
TGTGTCGGATAAAGCTCACGATATCAAAGAGGCAGCCAAAGAGAAAGTGA
CAGGAACCAAAGAGGCACTTGAAGATACTACAGAGCAAGCAAAAGAGAAA
GCGAGTGAAGCGTACGAAAAAGTCAGCGACACGGCATACGAATACAAAGA
GCGTGCGGAGGAGGCTGCTGAACATGCGATGAAAGTGTCTACAGAGGAAG
AGGAAAAACTGGCTGAACAGCTTCAGCAGCGGGCAACCGAGGCTAAGAGC
ACGGCCACGGACAGACTTTACCGGGCCCAGGAGAGTGTAGAAGAGGGCGT
GGAAGAAGCAAAAGATTACATGAAGGGGAAGAGCGAGCAGGCCAAGAAAA
CACGTGACGAAGCGCAGAACCGTGCTGAGCGGGCAGCGCAGGAGCTCGAC
ACTTCCAAAAAAGAGAAGTAATCACGATGGAGGGGATCGACAAAGGAACG
AAAAGAGCGAAGAGGGAGAGGCAGGGGGGAAGGAGGGATATAAGAACGGA
AGCCACAAGGAAAGAAACGTGTGGCTATGAAGGTATTAGTATTTGACATG
TGGAAAGAAGGTTGATCTGAATTTGGAATTGTATAATGCAGAGTTCGAGT
TTGGTTTTCCAGTTAAAAAATGATACAGCACAAGACGTATCGAATATCGG
AGTTCATGAAACTCCGGAAATATTTTTCATTTTAAGATAAACTACCTGCA
GTCCCAAAGGTAACGATAGGTGTGAATTTGAGCAGAGAAGAAGTCAAGTG
AGATTGGAGGAAGGCGAAGAGCCGAAGTGTGCGCCGAGCGTTAAAGAAAT
GTCTTTGTTAAAAAAAACGCGAGCCCCTTTTCCTCTCATCCCCATCCGTT
TTGCACCTTCTTTTCCATCATTTGGCATCGTTCGATCCGATGGTTTTGAT
T
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protein sequence of rna6678

>rna6678-protein ID=rna6678-protein|Name=rna6678|organism=Nannochloropsis gaditana|type=polypeptide|length=100bp
MAFARTVARQMGHGLERVDVSLSMRKWWKLGYTRQNGLITKSLSPFEQRI
ISPMFDDAPNKVLKYLKRWSTTILPAFVITYSTVKWADWEFDQIHREHWD
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mRNA from alignment at CM002469.1:236585..238589-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna6678 ID=rna6678|Name=rna6678|organism=Nannochloropsis gaditana|type=mRNA|length=2005bp|location=Sequence derived from alignment at CM002469.1:236585..238589- (Nannochloropsis gaditana)
AGAAACACTGGCGAGAGAGAGAAGGGGTTCCTAACCCTACCACGCGGGAT
GGAGCCATGGGAACGTCTCGCAGCCCAGGGGGGCGGTCGCGAGCGTGGGT
CGCTTTGCAACACCATTGTCAGGGGTCTTTTTGTTGGCGTTTAATGGCAG
CCACCAGGCTGAGGCCATTGCCTGATGGCAAAGCAGGGAGTGCCCGTGTT
CTCCTGAGGGAGCCGTCTTTCGGAAAGCGCAGCTCTGTAAGGAGCAATGT
CCAATTTCGTGCCCGACACTCCATCATGTTTACGTATTTCTAAAGTCATC
TCCTCGGCGCGTAGAAGTTTAACAGTGTGTAGCAGGGAATTTACTTTTCC
GCGCCGTCACTTGCCTCTGCGCATGCGAGACGGATTCGCAGTCTTGATTC
CTTTCCTCTTCCCACACGCTCAACACACCACCCATCCTTCCCTTTATCAT
CCTAGCCCTCAGTGACATGGCTTTCGCGCGGACGGTGGCCCGCCAGATGG
GTCATGGCTTGGAGCGTGTCGATGTCAGCCTCTCCATGCGGAAGTGGTGG
AAACTCGGATACACGCGTCAGAACGGTTTGGTAAGGAGAAGTGTACTTCG
AAAGCTTTGTTTGGAATGAGGGGAAGGGCATGTGGAATGATGAAAACCTC
GCCTGGAACATGATGAGGCATTGTTCTTGTGCGAAAATGTTACGCTAGTA
TTGAGGAGGATGCCGATGGCCCCATTGTAGGGACGTTGTGGCAATGCTAG
CTTTTTTTGCCGGCAATACCTCAGGATTGCTTTCGAACATGGATTGACCT
CTTTCTAGTGACGGAGACGTCAGTGCAGCACCATAAGCACCTGTTGCTCT
CACCAATCCTGGTGTCCAATTTGTCTTGAGATGCCTGCGCGTTTTACCGT
AGTCCATCCCCTCGCCACAACAGATCACAAAGTCTCTCTCCCCCTTCGAG
CAGCGTATCATCTCGCCCATGTTCGACGATGCCCCGAATAAGGTACGCCG
GTATATGTGTCCTTGGTCGCATCGCGTTCTGATCACTCATTAGACGGGCT
GAGCTTCCCCCCGATCCGTCGGTTGTATAACCGCCATGACAGGGTCCTAT
CTCCCTTTCAACGTTTCGACTTGCAAATAACCACTGCGATCATCCTCTTC
ACTATGTTATGTCGGAATGCTCGATGCATGTGCGCTGACGTTTGCTTTCG
GATGGTTACCTCCTTATCCCCTTCTCGGTTCCCATTCTACCCAGGTCCTC
AAGTACTTGAAGCGTTGGTCCACCACCATCCTCCCCGCCTTCGTCATCAC
GTACTCGACGGTGAAATGGGCCGACTGGGAGTTCGACCAGATCCATCGCG
AGCACTGGGACTAGGGGGTGTGGAGGCCTGGGAGGGACGGTGGGTTCAGC
AATCGGCATGCGGCAGCTGCTCATGTGCGTGGTCAGAGGAGGAAGGGCGA
TGTTGGCGCAGGTAGCAAGGGAACGAGAGCGGTGGAGGCGTTGGACCGGC
GTCGGACTCACCTGTGGGGAAGGCCCCGTTGAGGGGGTGCTGTGCGTCAG
GAATTCGTCTCCTAGTGGGAGTCCCGGGCCCCGGGCCGGCATCGCGAATC
AAAACCATCGGATCGAACGATGCCAAATGATGGAAAAGAAGGTGCAAAAC
GGATGGGGATGAGAGGAAAAGGGGCTCGCGTTTTTTTTAACAAAGACATT
TCTTTAACGCTCGGCGCACACTTCGGCTCTTCGCCTTCCTCCAATCTCAC
TTGACTTCTTCTCTGCTCAAATTCACACCTATCGTTACCTTTGGGACTGC
AGGTAGTTTATCTTAAAATGAAAAATATTTCCGGAGTTTCATGAACTCCG
ATATTCGATACGTCTTGTGCTGTATCATTTTTTAACTGGAAAACCAAACT
CGAACTCTGCATTATACAATTCCAAATTCAGATCAACCTTCTTTCCACAT
GTCAAATACTAATACCTTCATAGCCACACGTTTCTTTCCTTGTGGCTTCC
GTTCT
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Coding sequence (CDS) from alignment at CM002469.1:236585..238589-

>rna6678 ID=rna6678|Name=rna6678|organism=Nannochloropsis gaditana|type=CDS|length=909bp|location=Sequence derived from alignment at CM002469.1:236585..238589- (Nannochloropsis gaditana)
GTCCTCAAGTACTTGAAGCGTTGGTCCACCACCATCCTCCCCGCCTTCGT
CATCACGTACTCGACGGTGAAATGGGCCGACTGGGAGTTCGACCAGATCC
ATCGCGAGCACTGGGACTAGATCACAAAGTCTCTCTCCCCCTTCGAGCAG
CGTATCATCTCGCCCATGTTCGACGATGCCCCGAATAAGATGGCTTTCGC
GCGGACGGTGGCCCGCCAGATGGGTCATGGCTTGGAGCGTGTCGATGTCA
GCCTCTCCATGCGGAAGTGGTGGAAACTCGGATACACGCGTCAGAACGGT
TTGGTCCTCAAGTACTTGAAGCGTTGGTCCACCACCATCCTCCCCGCCTT
CGTCATCACGTACTCGACGGTGAAATGGGCCGACTGGGAGTTCGACCAGA
TCCATCGCGAGCACTGGGACTAGATCACAAAGTCTCTCTCCCCCTTCGAG
CAGCGTATCATCTCGCCCATGTTCGACGATGCCCCGAATAAGATGGCTTT
CGCGCGGACGGTGGCCCGCCAGATGGGTCATGGCTTGGAGCGTGTCGATG
TCAGCCTCTCCATGCGGAAGTGGTGGAAACTCGGATACACGCGTCAGAAC
GGTTTGGTCCTCAAGTACTTGAAGCGTTGGTCCACCACCATCCTCCCCGC
CTTCGTCATCACGTACTCGACGGTGAAATGGGCCGACTGGGAGTTCGACC
AGATCCATCGCGAGCACTGGGACTAGATCACAAAGTCTCTCTCCCCCTTC
GAGCAGCGTATCATCTCGCCCATGTTCGACGATGCCCCGAATAAGATGGC
TTTCGCGCGGACGGTGGCCCGCCAGATGGGTCATGGCTTGGAGCGTGTCG
ATGTCAGCCTCTCCATGCGGAAGTGGTGGAAACTCGGATACACGCGTCAG
AACGGTTTG
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Synonyms
Publications