EWM24028.1, cds6662 (CDS) Nannochloropsis gaditana

Overview
NameEWM24028.1
Unique Namecds6662
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002469.1:238010..238123 -
Alignment locationCM002469.1:237598..237666 -
Alignment locationCM002469.1:237226..237345 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM24028.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100040g29.2026.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002469.1supercontigCM002469.1:238010..238123 -
CM002469.1supercontigCM002469.1:237598..237666 -
CM002469.1supercontigCM002469.1:237226..237345 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
GO:0008121ubiquinol-cytochrome-c reductase activity
Vocabulary: Biological Process
TermDefinition
GO:0006091generation of precursor metabolites and energy
Vocabulary: INTERPRO
TermDefinition
IPR004205Cyt_bc1_su8
Homology
BLAST of EWM24028.1 vs. NCBI_GenBank
Match: gi|585105315|gb|EWM24028.1| (hypothetical protein Naga_100040g29 [Nannochloropsis gaditana])

HSP 1 Score: 209.92 bits (533), Expect = 7.481e-69
Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 0
Query:    1 MAFARTVARQMGHGLERVDVSLSMRKWWKLGYTRQNGLITKSLSPFEQRIISPMFDDAPNKVLKYLKRWSTTILPAFVITYSTVKWADWEFDQIHREHWD 100
            MAFARTVARQMGHGLERVDVSLSMRKWWKLGYTRQNGLITKSLSPFEQRIISPMFDDAPNKVLKYLKRWSTTILPAFVITYSTVKWADWEFDQIHREHWD
Sbjct:    1 MAFARTVARQMGHGLERVDVSLSMRKWWKLGYTRQNGLITKSLSPFEQRIISPMFDDAPNKVLKYLKRWSTTILPAFVITYSTVKWADWEFDQIHREHWD 100          
BLAST of EWM24028.1 vs. NCBI_GenBank
Match: gi|1173945136|gb|OQR93800.1| (hypothetical protein ACHHYP_02267 [Achlya hypogyna])

HSP 1 Score: 63.5438 bits (153), Expect = 3.066e-11
Identity = 27/77 (35.06%), Postives = 47/77 (61.04%), Query Frame = 0
Query:   23 SMRKWWKLGYTRQNGLITKSLSPFEQRIISPMFDDAPNKVLKYLKRWSTTILPAFVITYSTVKWADWEFDQIHREHW 99
            ++  WWK  Y  + G + ++LSP+EQR +  +   AP K L+ ++  +  ++P+F++ + TV WA  E D+ HR HW
Sbjct:    7 ALATWWK-KYAPETGRVVRTLSPYEQRPVDYLIKSAPQKALRKVQENALVLVPSFILLWGTVAWAKAENDRYHRTHW 82          
BLAST of EWM24028.1 vs. NCBI_GenBank
Match: gi|669145848|ref|XP_008608486.1| (UcrQ family protein [Saprolegnia diclina VS20] >gi|530739917|gb|EQC38159.1| UcrQ family protein [Saprolegnia diclina VS20])

HSP 1 Score: 62.003 bits (149), Expect = 1.303e-10
Identity = 27/77 (35.06%), Postives = 46/77 (59.74%), Query Frame = 0
Query:   23 SMRKWWKLGYTRQNGLITKSLSPFEQRIISPMFDDAPNKVLKYLKRWSTTILPAFVITYSTVKWADWEFDQIHREHW 99
            ++  WWK  Y  + G + ++LSP+EQR +  +   AP K L+ ++  +  ++P+F + + TV WA  E D+ HR HW
Sbjct:    7 ALTTWWK-KYAPETGRVVRTLSPYEQRPVDYLIKSAPQKALRKVQENALVLVPSFFLLWGTVAWAKGENDRYHRTHW 82          
BLAST of EWM24028.1 vs. NCBI_GenBank
Match: gi|1173944929|gb|OQR93612.1| (hypothetical protein THRCLA_22296 [Thraustotheca clavata])

HSP 1 Score: 62.003 bits (149), Expect = 1.421e-10
Identity = 26/77 (33.77%), Postives = 48/77 (62.34%), Query Frame = 0
Query:   23 SMRKWWKLGYTRQNGLITKSLSPFEQRIISPMFDDAPNKVLKYLKRWSTTILPAFVITYSTVKWADWEFDQIHREHW 99
            ++  WWK  Y  ++G + ++LSP+EQR +  +   AP K L+ ++  +  ++P+F++ + TV W+  E D+ HR HW
Sbjct:    7 ALATWWK-KYAPESGRVVRTLSPYEQRPVDYLIKSAPQKALRKVQENALMLVPSFLLLWGTVAWSKAENDRYHRSHW 82          
BLAST of EWM24028.1 vs. NCBI_GenBank
Match: gi|698795028|ref|XP_009830543.1| (hypothetical protein H257_06866 [Aphanomyces astaci] >gi|574114119|gb|ETV79607.1| hypothetical protein H257_06866 [Aphanomyces astaci])

HSP 1 Score: 60.4622 bits (145), Expect = 5.297e-10
Identity = 28/77 (36.36%), Postives = 48/77 (62.34%), Query Frame = 0
Query:   23 SMRKWWKLGYTRQNGLITKSLSPFEQRIISPMFDDAPNKVLKYLKRWSTTILPAFVITYSTVKWADWEFDQIHREHW 99
            +++ WW   Y+ ++G + + LSPFEQR +  +   AP K L+ ++     ++P+F++ + TV WA  E D+ HREHW
Sbjct:   11 ALKTWWS-KYSYESGRVVRQLSPFEQRPVDYLIRTAPEKALRKVQENFFPLVPSFLLLWGTVAWAVDENDRHHREHW 86          
BLAST of EWM24028.1 vs. NCBI_GenBank
Match: gi|673042985|ref|XP_008875453.1| (hypothetical protein H310_10775 [Aphanomyces invadans] >gi|574469126|gb|ETV96142.1| hypothetical protein H310_10775 [Aphanomyces invadans])

HSP 1 Score: 60.4622 bits (145), Expect = 6.167e-10
Identity = 27/78 (34.62%), Postives = 49/78 (62.82%), Query Frame = 0
Query:   23 SMRKWWKLGYTRQNGLITKSLSPFEQRIISPMFDDAPNKVLKYLKRWSTTILPAFVITYSTVKWADWEFDQIHREHWD 100
            +++ WW   Y+ ++G + + LSP+EQR +  +   AP K L+ ++     ++P+F++ + TV WA  E D+ HR+HWD
Sbjct:   11 ALKTWWS-KYSYESGRVVRQLSPYEQRPVDYLIRTAPQKALRKVQENFFPLVPSFLLLWGTVAWAVDENDRHHRQHWD 87          
The following BLAST results are available for this feature:
BLAST of EWM24028.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 6
Match NameE-valueIdentityDescription
gi|585105315|gb|EWM24028.1|7.481e-69100.00hypothetical protein Naga_100040g29 [Nannochlorops... [more]
gi|1173945136|gb|OQR93800.1|3.066e-1135.06hypothetical protein ACHHYP_02267 [Achlya hypogyna... [more]
gi|669145848|ref|XP_008608486.1|1.303e-1035.06UcrQ family protein [Saprolegnia diclina VS20] >gi... [more]
gi|1173944929|gb|OQR93612.1|1.421e-1033.77hypothetical protein THRCLA_22296 [Thraustotheca c... [more]
gi|698795028|ref|XP_009830543.1|5.297e-1036.36hypothetical protein H257_06866 [Aphanomyces astac... [more]
gi|673042985|ref|XP_008875453.1|6.167e-1034.62hypothetical protein H310_10775 [Aphanomyces invad... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6678rna6678Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications