rna6675, rna6675 (mRNA) Nannochloropsis gaditana

Overview
Namerna6675
Unique Namerna6675
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length921
Alignment locationCM002469.1:230073..231650 +

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100040g24.1998.mrna
Orig protein idgnl|cribi|Naga_100040g24.1998
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002469.1supercontigCM002469.1:230073..231650 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100040g24gene6453Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna6675rna6675-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM24000.1cds6659Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna6675 ID=rna6675|Name=rna6675|organism=Nannochloropsis gaditana|type=mRNA|length=921bp
ATGACCACTTTGACAAGTACAGAAGACGTGCCATCTCTCCGCCGCACACT
TGAATCGTTGCAACGGCAGCATGCTGCACTGGATGCAGAGGAGCGAATGC
TGGAGCTGAAGGTCGAGGAAAAGAAAGGCGAACTCAAACGCAGCGAGGCC
CGTCTTCAAAGTTTACAGAGTGTACGGCCATCTTTGGTAGAAGAACACAA
CATGTTGGAAAAAGAGCTTGCACGGCAGTATGACGAGTACGTGCGGCTAT
ACCAGAATTTGGACTTTCTTGAGCAAGAAGTCGACTCTCTCCGCTCGGCA
GAGCTTGCGAAACAGTCCCGTGCGGAGCGACGCATACGATGCGTGCAACG
ACGGGTGCAAGTAGAGGAGGAGCGGCGGCAGGAATTGGTAGCTGGAGGTG
GAGGCCCGGGGAAGCAAGAGGGAGGAGGAGGGGGAAAAAGAGGAAGCAGG
GCAATGTCAGACGGAGATGGAAGGAGAAGAATGAAAGCAAGCGAAAGGGG
AGCAATTAAAGGATATGGGAAGGAAGCAATGGAGGGTCAGCTTTTTGTCA
TGGACTACGGGGACGAAGTCATCACTGATACGAAGGCTTTGAACAATGTG
ATGGATGTGAAAACGAGCAGAGGAAGAAGGACATCCGTATCGCAGCCATC
GCCACCCACATCAACATCTTCGGCTTCTCCGTCGATGGAGCACTTAAAAC
AGTATGGCCATCCACCTCCATTGGCAAATCGGAAATTCTCGACCGCATCT
TCCATTTTGGAAATGGGTGCAAAGCGTTCTTCTCCTTCCTCGCTGGGAGA
GGGAGAGGAGGAAGATGATGATTTCTCGTTCTTGCCGGGTGAGGAGAAAG
AGGACGGTACCGAAGATATCCGTGATGAAGACATGGAAGCTGTACACGAA
GCAGATGACGACAACTTTTAA
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protein sequence of rna6675

>rna6675-protein ID=rna6675-protein|Name=rna6675|organism=Nannochloropsis gaditana|type=polypeptide|length=304bp
MSFAQRTTRWARGLFPRWKGYNVRWKEVLGPSQDRMLLPWGFMGEEDVQG
RVASRIRWLSEKQPTVIPQHEHMPGDLTTSEIANELSASLAEDMSHGAQQ
AYRRIVSYFLAVPGSGEQAGKYGDFTNSNYCTPDLSCFLEDIKRSYTEWG
VKPCLHVESVRAKLRCLRVEEGLLSKNTYALFGTMGRYEALTHIWEGVIG
PEGRLLQELEGNVPRRLVAEVELSVEESFWFQSRPATAWPRVGNNAEQDL
EQGLTGGKQGEMKKRTHYFTFESDYFGDEGQLEWVVSNINDVIASPSLSR
ALIQ
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mRNA from alignment at CM002469.1:230073..231650+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna6675 ID=rna6675|Name=rna6675|organism=Nannochloropsis gaditana|type=mRNA|length=1578bp|location=Sequence derived from alignment at CM002469.1:230073..231650+ (Nannochloropsis gaditana)
CTTCAACTCGGAGCCTGACACCAGCATTCCACACCAGACTCGACCGCATT
ACCGGCGTGGAAACGCGGGGAATCCCCACTCGAAGATCTCTTGTTGGTCT
TTGTCCCAGCTTTTCCTTGAGACGATTTCTCACGTATTTCAAATGCATTT
GATACCTCAATTCTTTGACGGCACATAGAGTTCTAGTGTTCAACACCCTC
ATGCCGACTCCCTATCTCGCTACATAGAGGTCATGTCTTTCGCACAACGG
ACAACAAGATGGGCACGGGGACTTTTTCCACGGTGGAAAGGGTACAATGT
TCGCTGGAAAGAGGTCTTGGGTCCCTCGCAAGATCGAATGTTGCTGCCCT
GGGGGTtcatgggcgaggaagacgtgcaAGGAAGAGTTGCGTCGCGCATC
CGGTGGCTGTCCGAAAAGCAACCCACAGTGATTCCACAACATGAGCACAT
GCCTGGAGACCTCACGACAAGCGAAATCGCGAATGAGCTTTCTGCCTCCT
TGGCAGAAGATATGTCGCACGGTGCTCAGCAGGCATACAGAAGAATCGTC
AGCTATTTCTTGGCCGTTCCCGGCTCGGGAGAGCAGGCAGGAAAATATGG
AGACTTCACGAATTCCAATTATTGTACCCCTGATTTATCGTGTTTTTTGG
AGGACATAAAGCGTTCGTACACCGAGTGGGGGGTGAAGCCTTGCCTGCAC
GTGGAGTCAGTCCGGGCCAAGTTGCGATGCttgcgcgtggaggaaggctt
gtTGAGCAAAAATACTTACGCCTTGTTTGGGACAATGGGCCGATATGAGG
CATTGACACACATATGGGAGGGTGTGATAGGACCGGAGGGGCGTTTGCTG
CAGGAACTGGAGGGGAACGTGCCCAGGCGCTTGGTCGCCGAGGTGGAGCT
GTCGGTGGAAGAGTCGTTCTGGTTCCAGAGCCGGCCGGCCACAGCGTGGC
CCAGAGTAGGAAATAATGCAGAGCAAGATCTTGAGCAAGGTCTtacggga
gggaaacaggggGAAATGAAAAAGCGGACGCACTATTTCACTTTCGAAAG
CGACTACTTCGGCGACGAGGGGCAGTTGGAGTGGGTCGTTAGCAATATCA
ACGACGTGattgcctctccttccctctctcgggCCCTGATCCAGTAATGA
GAAACTCAAGGGTGGAAGCCAAGCCGCCGAGTCAATAGTGTTGACATTTC
TGGGTGGGACAGCGCCGAGGAAGGGTAGGACAGACGGAAGGTGGAAAGGC
GGACACTAGAGGGAGGTCTCAACGAGGCTGGGGTACGCGGAACACAGGCA
GTGGAATTGCTGTGCAGTGGATCATACACGTATGTGAATGCGAGAGGATT
GACACGATGCGGCGTCCGTGAGATAGAGTAGATTAGGATAATACAAAGGG
CAGGCTGCGGGATTGCAAATTTGTAAGTAGAGCATGGGCACATGGATGTG
CGCCTTAAAGTCAAACGCTTTCTAAGTGTATGTGAGTACGGACAATCAGT
ATCAGTCATAATATGATCAAATAAGCATCTGCTAGTCCCGGAATTTGGCC
GGACACACGGCTAAAGCCATGGCAACTG
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Coding sequence (CDS) from alignment at CM002469.1:230073..231650+

>rna6675 ID=rna6675|Name=rna6675|organism=Nannochloropsis gaditana|type=CDS|length=915bp|location=Sequence derived from alignment at CM002469.1:230073..231650+ (Nannochloropsis gaditana)
ATGTCTTTCGCACAACGGACAACAAGATGGGCACGGGGACTTTTTCCACG
GTGGAAAGGGTACAATGTTCGCTGGAAAGAGGTCTTGGGTCCCTCGCAAG
ATCGAATGTTGCTGCCCTGGGGGTtcatgggcgaggaagacgtgcaAGGA
AGAGTTGCGTCGCGCATCCGGTGGCTGTCCGAAAAGCAACCCACAGTGAT
TCCACAACATGAGCACATGCCTGGAGACCTCACGACAAGCGAAATCGCGA
ATGAGCTTTCTGCCTCCTTGGCAGAAGATATGTCGCACGGTGCTCAGCAG
GCATACAGAAGAATCGTCAGCTATTTCTTGGCCGTTCCCGGCTCGGGAGA
GCAGGCAGGAAAATATGGAGACTTCACGAATTCCAATTATTGTACCCCTG
ATTTATCGTGTTTTTTGGAGGACATAAAGCGTTCGTACACCGAGTGGGGG
GTGAAGCCTTGCCTGCACGTGGAGTCAGTCCGGGCCAAGTTGCGATGCtt
gcgcgtggaggaaggcttgtTGAGCAAAAATACTTACGCCTTGTTTGGGA
CAATGGGCCGATATGAGGCATTGACACACATATGGGAGGGTGTGATAGGA
CCGGAGGGGCGTTTGCTGCAGGAACTGGAGGGGAACGTGCCCAGGCGCTT
GGTCGCCGAGGTGGAGCTGTCGGTGGAAGAGTCGTTCTGGTTCCAGAGCC
GGCCGGCCACAGCGTGGCCCAGAGTAGGAAATAATGCAGAGCAAGATCTT
GAGCAAGGTCTtacgggagggaaacaggggGAAATGAAAAAGCGGACGCA
CTATTTCACTTTCGAAAGCGACTACTTCGGCGACGAGGGGCAGTTGGAGT
GGGTCGTTAGCAATATCAACGACGTGattgcctctccttccctctctcgg
gCCCTGATCCAGTAA
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Synonyms
Publications